Experiment set1IT081 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20635 -4.5 -11.4 3-isopropylmalate dehydrogenase compare
AO353_13070 -4.5 -7.4 phosphoserine phosphatase compare
AO353_08185 -4.4 -8.9 methionine biosynthesis protein MetW compare
AO353_02070 -4.3 -6.6 prephenate dehydratase compare
AO353_05110 -4.3 -10.3 histidinol dehydrogenase compare
AO353_05115 -4.3 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12070 -4.2 -8.5 imidazoleglycerol-phosphate dehydratase compare
AO353_07220 -4.1 -7.9 anthranilate synthase compare
AO353_14505 -4.1 -11.8 ketol-acid reductoisomerase compare
AO353_12520 -4.0 -11.9 glutamate synthase compare
AO353_07230 -4.0 -16.3 anthranilate synthase compare
AO353_08475 -4.0 -9.3 phosphoserine phosphatase compare
AO353_20695 -4.0 -7.1 O-succinylhomoserine sulfhydrylase compare
AO353_20665 -4.0 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_00430 -4.0 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_22800 -3.9 -4.6 sulfite reductase compare
AO353_12360 -3.9 -8.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_12075 -3.9 -7.5 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20620 -3.9 -8.1 isopropylmalate isomerase compare
AO353_08180 -3.9 -13.8 homoserine O-acetyltransferase compare
AO353_08345 -3.9 -9.0 dihydroxy-acid dehydratase compare
AO353_12085 -3.9 -8.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12515 -3.9 -21.3 glutamate synthase compare
AO353_13165 -3.8 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_09240 -3.8 -3.7 acetylglutamate kinase compare
AO353_10710 -3.7 -6.1 tryptophan synthase subunit beta compare
AO353_20625 -3.6 -4.3 3-isopropylmalate dehydratase compare
AO353_02075 -3.6 -12.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20540 -3.5 -8.4 aromatic amino acid aminotransferase compare
AO353_14495 -3.5 -12.2 acetolactate synthase 3 catalytic subunit compare
AO353_04155 -3.5 -13.1 ornithine carbamoyltransferase compare
AO353_07210 -3.5 -6.6 indole-3-glycerol-phosphate synthase compare
AO353_12115 -3.4 -4.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_09000 -3.4 -6.1 argininosuccinate lyase compare
AO353_10670 -3.4 -8.7 shikimate dehydrogenase compare
AO353_08685 -3.4 -10.2 N-acetylglutamate synthase compare
AO353_07155 -3.4 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12500 -3.3 -2.3 shikimate kinase compare
AO353_04105 -3.3 -9.5 argininosuccinate synthase compare
AO353_14500 -3.3 -7.6 acetolactate synthase 3 regulatory subunit compare
AO353_06040 -3.1 -4.3 exodeoxyribonuclease V subunit alpha compare
AO353_07215 -3.1 -8.7 anthranilate phosphoribosyltransferase compare
AO353_11860 -3.1 -7.8 Fis family transcriptional regulator conserved
AO353_11775 -3.1 -9.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_19060 -3.1 -5.5 CysB family transcriptional regulator compare
AO353_08510 -3.0 -6.1 3-phosphoglycerate dehydrogenase compare
AO353_02800 -3.0 -11.9 C4-dicarboxylate transporter conserved
AO353_14370 -3.0 -7.4 glucose-6-phosphate isomerase compare
AO353_08015 -2.9 -7.6 5,10-methylenetetrahydrofolate reductase compare
AO353_12460 -2.9 -8.8 malate dehydrogenase compare
AO353_14150 -2.9 -2.8 peptidylprolyl isomerase compare
AO353_06495 -2.8 -6.7 gamma-glutamyl phosphate reductase compare
AO353_02685 -2.8 -4.9 phosphoribosylglycinamide formyltransferase compare
AO353_15925 -2.8 -11.2 2-isopropylmalate synthase compare
AO353_00825 -2.7 -4.1 porin compare
AO353_10945 -2.7 -3.7 cytochrome C compare
AO353_00620 -2.7 -3.6 cytochrome C oxidase Cbb3 compare
AO353_02250 -2.7 -4.7 chorismate synthase compare
AO353_12365 -2.6 -4.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_14115 -2.6 -7.5 gamma-glutamyl kinase compare
AO353_10705 -2.6 -5.7 tryptophan synthase subunit alpha compare
AO353_03020 -2.4 -9.4 arginine N-succinyltransferase compare
AO353_20175 -2.4 -4.6 ATP-dependent Clp protease proteolytic subunit compare
AO353_00605 -2.3 -8.0 cytochrome C oxidase Cbb3 compare
AO353_15250 -2.3 -4.3 cytochrome B compare
AO353_15185 -2.2 -6.0 ATPase compare
AO353_05690 -2.1 -4.7 SsrA-binding protein compare
AO353_00610 -2.1 -2.1 cytochrome C oxidase Cbb3 compare
AO353_06050 -2.1 -7.4 exodeoxyribonuclease V subunit gamma compare
AO353_12090 -2.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_16940 -2.0 -6.5 deoxycytidine triphosphate deaminase compare
AO353_04565 -2.0 -6.5 nucleoid-associated protein compare
AO353_09040 -2.0 -2.3 diaminopimelate epimerase compare
AO353_02810 -1.9 -8.3 histidine kinase compare
AO353_13640 -1.9 -5.1 histidine kinase compare
AO353_08880 -1.9 -3.3 exopolyphosphatase compare
AO353_03580 -1.9 -4.2 ATP-dependent DNA helicase RuvB compare
AO353_23495 -1.8 -3.6 SAM-dependent methyltransferase compare
AO353_08165 -1.8 -3.4 pyrroline-5-carboxylate reductase compare
AO353_11850 -1.8 -4.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_06720 -1.7 -2.5 NrdR family transcriptional regulator compare
AO353_07355 -1.7 -6.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03365 -1.7 -8.5 transcriptional regulator compare
AO353_03615 -1.7 -3.9 cold-shock protein compare
AO353_00750 -1.7 -4.3 GntR family transcriptional regulator compare
AO353_06045 -1.7 -7.2 exodeoxyribonuclease V subunit beta compare
AO353_03590 -1.6 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_15900 -1.5 -2.6 GTP-binding protein compare
AO353_10430 -1.5 -3.6 chromosome partitioning protein ParB compare
AO353_19750 -1.5 -2.1 diaminopimelate epimerase compare
AO353_05075 -1.5 -8.6 adenylylsulfate kinase compare
AO353_04175 -1.5 -4.8 glycerol uptake facilitator GlpF compare
AO353_03795 -1.4 -2.7 fumarate hydratase compare
AO353_00650 -1.4 -2.5 cytochrome biogenesis protein compare
AO353_08780 -1.4 -6.1 5-formyltetrahydrofolate cyclo-ligase compare
AO353_13140 -1.3 -5.2 tRNA dimethylallyltransferase compare
AO353_24130 -1.3 -3.1 hypothetical protein compare
AO353_23620 -1.3 -1.4 hypothetical protein compare
AO353_14935 -1.3 -3.4 aminopeptidase compare
AO353_22685 -1.2 -3.1 peroxidase compare
AO353_03235 -1.2 -6.1 glutamate-pyruvate aminotransferase compare
AO353_06155 -1.2 -6.2 copper-transporting ATPase compare
AO353_05010 -1.2 -2.1 HopJ type III effector protein compare
AO353_07515 -1.2 -1.6 transporter compare
AO353_16805 -1.2 -5.0 recombinase RecA compare
AO353_12345 -1.2 -2.0 twin-arginine protein translocation system subunit TatC compare
AO353_02175 -1.2 -2.6 carbon storage regulator compare
AO353_07105 -1.2 -1.4 biotin--protein ligase compare
AO353_11165 -1.1 -6.3 hypothetical protein compare
AO353_27650 -1.1 -3.7 cell division protein FtsK compare
AO353_04355 -1.1 -2.0 homoserine dehydrogenase compare
AO353_21905 -1.1 -2.7 hypothetical protein compare
AO353_10985 -1.1 -2.4 hypothetical protein compare
AO353_06850 -1.1 -3.3 MFS transporter compare
AO353_03015 -1.1 -3.6 arginine N-succinyltransferase compare
AO353_01410 -1.1 -2.8 ribonuclease E compare
AO353_02040 -1.1 -2.5 integration host factor subunit beta compare
AO353_05080 -1.1 -6.1 sulfate adenylyltransferase compare
AO353_10435 -1.1 -6.2 chromosome partitioning protein compare
AO353_09135 -1.1 -1.5 cytochrome C compare
AO353_19090 -1.0 -1.7 MarR family transcriptional regulator compare
AO353_12105 -1.0 -4.3 peptidase S41 compare
AO353_14395 -1.0 -3.2 poly(A) polymerase compare
AO353_17750 -1.0 -2.5 transcriptional regulator compare
AO353_21625 -1.0 -1.9 Fe/S biogenesis protein NfuA compare
AO353_11530 -1.0 -5.0 diguanylate cyclase compare
AO353_08130 -1.0 -2.2 uracil phosphoribosyltransferase compare
AO353_08910 -1.0 -1.8 hypothetical protein compare
AO353_03630 -0.9 -6.6 porin compare
AO353_13225 -0.9 -2.2 50S ribosomal protein L9 compare
AO353_05105 -0.9 -5.8 histidinol-phosphate aminotransferase compare
AO353_20335 -0.9 -3.9 3-methylcrotonyl-CoA carboxylase compare
AO353_27550 -0.9 -1.8 hypothetical protein compare
AO353_21640 -0.9 -1.9 cobalt transporter compare
AO353_09030 -0.9 -0.7 iron donor protein CyaY compare
AO353_18780 -0.9 -4.4 cobyrinic acid a,c-diamide synthase compare
AO353_03025 -0.9 -3.3 acetylornithine aminotransferase compare
AO353_04480 -0.9 -2.3 NGG1p interacting factor NIF3 compare
AO353_10320 -0.9 -1.4 hypothetical protein compare
AO353_14940 -0.9 -2.6 malate:quinone oxidoreductase compare
AO353_14775 -0.9 -3.9 hypothetical protein compare
AO353_12880 -0.9 -1.5 ADP-heptose--LPS heptosyltransferase compare
AO353_16820 -0.9 -1.6 hypothetical protein compare
AO353_15725 -0.8 -2.5 hypothetical protein compare
AO353_27155 -0.8 -1.8 hypothetical protein compare
AO353_04220 -0.8 -3.8 chemotaxis protein CheY compare
AO353_12935 -0.8 -2.1 glycosyltransferase compare
AO353_04650 -0.8 -2.3 molybdenum cofactor biosynthesis protein MoaE compare
AO353_05520 -0.8 -3.1 nicotinate-nucleotide pyrophosphorylase compare
AO353_20185 -0.8 -3.8 DNA-binding protein compare
AO353_03670 -0.8 -3.0 ornithine acetyltransferase compare
AO353_02970 -0.8 -2.4 carbon storage regulator compare
AO353_05125 -0.8 -2.6 BolA family transcriptional regulator compare
AO353_15395 -0.8 -2.3 transcriptional regulator compare
AO353_03250 -0.8 -1.4 gluconokinase compare
AO353_12395 -0.8 -2.4 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_05695 -0.8 -5.8 transcriptional regulator PdhR compare
AO353_20565 -0.8 -1.5 tRNA-Ala compare
AO353_05280 -0.8 -1.9 4-carboxymuconolactone decarboxylase compare
AO353_13245 -0.8 -3.1 hypothetical protein compare
AO353_17165 -0.8 -1.6 ATP-dependent helicase compare
AO353_27585 -0.8 -2.1 DNA repair protein compare
AO353_00490 -0.8 -2.1 PasA protein compare
AO353_20095 -0.8 -3.1 histidine kinase compare
AO353_24135 -0.8 -2.5 hypothetical protein compare
AO353_01080 -0.8 -4.9 hypothetical protein compare
AO353_12650 -0.8 -1.0 hypothetical protein compare
AO353_09320 -0.8 -4.7 ATP-dependent DNA helicase RecG compare
AO353_07315 -0.8 -1.5 rRNA methyltransferase compare
AO353_13605 -0.8 -4.4 oxidoreductase compare
AO353_24120 -0.8 -1.2 hypothetical protein compare
AO353_02465 -0.8 -1.5 hypothetical protein compare
AO353_24830 -0.8 -2.6 enoyl-CoA hydratase compare
AO353_14595 -0.7 -4.2 carbonate dehydratase compare
AO353_19290 -0.7 -2.2 molybdenum cofactor sulfurase compare
AO353_26550 -0.7 -1.4 hypothetical protein compare
AO353_19360 -0.7 -1.4 peroxiredoxin compare
AO353_01780 -0.7 -4.8 heat-shock protein Hsp90 compare
AO353_15555 -0.7 -2.7 fumarylacetoacetase compare
AO353_09260 -0.7 -3.6 ribonuclease PH compare
AO353_11310 -0.7 -2.1 aspartyl beta-hydroxylase compare
AO353_18540 -0.7 -1.9 pseudouridine synthase compare
AO353_27500 -0.7 -1.5 hypothetical protein compare
AO353_03585 -0.7 -1.4 ATP-dependent DNA helicase RuvA compare
AO353_09345 -0.7 -1.1 hypothetical protein compare
AO353_05810 -0.7 -2.4 dehydrogenase compare
AO353_08485 -0.7 -5.3 threonine dehydratase compare
AO353_15660 -0.7 -2.2 hypothetical protein compare
AO353_04365 -0.7 -2.8 recombinase XerD compare
AO353_11770 -0.7 -1.3 molecular chaperone Hsp33 compare
AO353_16605 -0.7 -5.3 protein-L-isoaspartate O-methyltransferase compare
AO353_00630 -0.7 -3.1 (Fe-S)-binding protein compare
AO353_27535 -0.7 -2.0 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_03100 -0.7 -1.2 XRE family transcriptional regulator compare
AO353_12240 -0.7 -2.7 histidine utilization repressor compare
AO353_09360 -0.7 -2.7 hypothetical protein compare
AO353_03710 -0.7 -1.8 formyltetrahydrofolate deformylase compare
AO353_03330 -0.7 -2.3 aldehyde dehydrogenase compare
AO353_01550 -0.7 -2.5 hypothetical protein compare
AO353_09560 -0.7 -1.0 type VI secretion protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium succinate dibasic hexahydrate across organisms