Experiment set1IT081 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_02735 +3.6 32.4 chemotaxis protein CheY compare
AO353_21830 +3.6 31.8 chemotaxis protein CheY compare
AO353_19340 +2.3 20.9 amino acid ABC transporter substrate-binding protein compare
AO353_20865 +2.2 7.2 cold-shock protein compare
AO353_20925 +1.7 1.9 hypothetical protein compare
AO353_16615 +1.6 14.3 RNA polymerase sigma factor RpoS compare
AO353_03515 +1.6 3.6 cold-shock protein compare
AO353_11155 +1.6 14.4 thioesterase compare
AO353_09060 +1.4 5.6 hypothetical protein compare
AO353_11160 +1.1 6.7 GntR family transcriptional regulator compare
AO353_13300 +1.1 1.7 LOG family protein compare
AO353_03510 +1.1 4.3 glycine cleavage system protein T compare
AO353_27905 +1.0 4.6 N-formylglutamate amidohydrolase compare
AO353_09275 +1.0 3.5 DNA-directed RNA polymerase subunit omega compare
AO353_19335 +1.0 7.1 TetR family transcriptional regulator compare
AO353_27890 +1.0 5.1 RpiR family transcriptional regulator compare
AO353_13660 +1.0 6.3 tRNA-dihydrouridine synthase B compare
AO353_17940 +0.9 2.7 hypothetical protein compare
AO353_26390 +0.9 3.0 glyoxalase compare
AO353_05490 +0.9 5.4 transcriptional regulator compare
AO353_17885 +0.8 1.7 hypothetical protein compare
AO353_10085 +0.8 2.2 pyridoxamine kinase compare
AO353_01795 +0.8 2.8 hypothetical protein compare
AO353_18435 +0.8 4.2 MarR family transcriptional regulator compare
AO353_02280 +0.8 1.6 DNA mismatch repair protein MutS compare
AO353_09745 +0.8 1.6 hypothetical protein compare
AO353_02000 +0.7 3.0 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_14915 +0.7 2.7 (2Fe-2S)-binding protein compare
AO353_05195 +0.7 5.2 glmZ(sRNA)-inactivating NTPase compare
AO353_08465 +0.7 6.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_26070 +0.7 2.2 hypothetical protein compare
AO353_15480 +0.7 1.5 hypothetical protein compare
AO353_22530 +0.7 2.5 hypothetical protein compare
AO353_24260 +0.7 1.3 hypothetical protein compare
AO353_07555 +0.7 2.1 glycine cleavage system protein R compare
AO353_17085 +0.7 2.1 hypothetical protein compare
AO353_12665 +0.7 2.1 glycosyl transferase compare
AO353_17250 +0.7 2.2 nitrile hydratase compare
AO353_04325 +0.7 1.8 hypothetical protein compare
AO353_03505 +0.7 4.9 serine dehydratase compare
AO353_26815 +0.7 1.6 transcriptional regulator compare
AO353_27010 +0.6 2.6 alpha-ketoglutarate-dependent dioxygenase compare
AO353_00065 +0.6 2.6 oxidoreductase compare
AO353_22845 +0.6 1.9 GNAT family acetyltransferase compare
AO353_01055 +0.6 5.6 AraC family transcriptional regulator compare
AO353_08875 +0.6 1.7 amino acid ABC transporter ATP-binding protein compare
AO353_24175 +0.6 1.4 hypothetical protein compare
AO353_00510 +0.6 2.9 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_12130 +0.6 1.9 preprotein translocase subunit SecB compare
AO353_20455 +0.6 1.6 HAD family hydrolase compare
AO353_14220 +0.6 1.4 ribosomal large subunit pseudouridine synthase D compare
AO353_27660 +0.6 1.5 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_12565 +0.6 2.0 type II secretion system protein GspH compare
AO353_27380 +0.6 1.7 pyocin R2, holin compare
AO353_21750 +0.6 1.5 peptidylprolyl isomerase compare
AO353_01065 +0.6 4.0 acetyl-CoA acetyltransferase compare
AO353_27235 +0.6 1.7 hypothetical protein compare
AO353_27910 +0.6 4.2 porin compare
AO353_01070 +0.6 5.0 poly(R)-hydroxyalkanoic acid synthase compare
AO353_20115 +0.6 2.0 LysR family transcriptional regulator compare
AO353_17515 +0.6 1.8 short-chain dehydrogenase compare
AO353_17985 +0.6 1.9 LysR family transcriptional regulator compare
AO353_00590 +0.6 1.8 cytochrome C oxidase Cbb3 compare
AO353_22675 +0.6 2.2 hypothetical protein compare
AO353_09775 +0.6 1.4 hypothetical protein compare
AO353_12720 +0.5 1.2 hypothetical protein compare
AO353_26935 +0.5 1.7 LysR family transcriptional regulator compare
AO353_12590 +0.5 1.9 hypothetical protein compare
AO353_26525 +0.5 1.3 hypothetical protein compare
AO353_23855 +0.5 2.5 hypothetical protein compare
AO353_15170 +0.5 1.8 cytochrome D ubiquinol oxidase subunit III compare
AO353_05625 +0.5 1.1 transcription elongation factor GreA compare
AO353_25835 +0.5 2.7 6-phosphogluconate dehydrogenase compare
AO353_17935 +0.5 1.5 hypothetical protein compare
AO353_22280 +0.5 1.6 hypothetical protein compare
AO353_04810 +0.5 0.9 hypothetical protein compare
AO353_25610 +0.5 2.5 polysaccharide deacetylase compare
AO353_27025 +0.5 2.6 2-nitropropane dioxygenase compare
AO353_24685 +0.5 1.8 hypothetical protein compare
AO353_04185 +0.5 3.4 DeoR family transcriptional regulator compare
AO353_06745 +0.5 1.6 zinc-binding protein compare
AO353_19000 +0.5 1.5 ABC transporter compare
AO353_13985 +0.5 1.8 pilus assembly protein compare
AO353_17945 +0.5 1.4 cyclic nucleotide-binding protein compare
AO353_18500 +0.5 1.5 chemotaxis protein CheY compare
AO353_06135 +0.5 2.1 NADPH:quinone reductase compare
AO353_14485 +0.5 0.6 pseudouridine synthase compare
AO353_21810 +0.5 1.6 alpha/beta hydrolase compare
AO353_16040 +0.5 1.5 hypothetical protein compare
AO353_01060 +0.5 2.9 3-ketoacyl-ACP reductase compare
AO353_19020 +0.5 1.6 hypothetical protein compare
AO353_19755 +0.5 2.0 cytosine deaminase compare
AO353_20120 +0.5 1.8 hypothetical protein compare
AO353_08380 +0.5 1.6 GTPase SAR1 compare
AO353_09440 +0.5 0.9 type VI secretion protein compare
AO353_21380 +0.5 2.6 rhizopine-binding protein compare
AO353_20910 +0.5 2.5 MerR family transcriptional regulator compare
AO353_11195 +0.5 4.1 hemolysin secretion protein D compare
AO353_19045 +0.5 2.9 2-dehydropantoate 2-reductase compare
AO353_26115 +0.5 0.7 hypothetical protein compare
AO353_26520 +0.5 1.3 TetR family transcriptional regulator compare
AO353_24985 +0.5 1.9 L-seryl-tRNA(Sec) selenium transferase compare
AO353_18475 +0.5 2.6 AraC family transcriptional regulator compare
AO353_22735 +0.4 1.6 hypothetical protein compare
AO353_19775 +0.4 2.0 transcriptional regulator compare
AO353_13530 +0.4 1.8 ABC transporter ATP-binding protein compare
AO353_00890 +0.4 2.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_25660 +0.4 2.0 ABC transporter substrate-binding protein compare
AO353_27135 +0.4 1.9 hypothetical protein compare
AO353_19255 +0.4 2.3 molybdenum cofactor biosynthesis protein B compare
AO353_08855 +0.4 1.8 GntR family transcriptional regulator compare
AO353_13740 +0.4 1.8 MFS transporter compare
AO353_28080 +0.4 1.8 hypothetical protein compare
AO353_05485 +0.4 2.8 Fructose-specific PTS system, I, HPr, and IIA components (from data) compare
AO353_14910 +0.4 2.2 pyridine nucleotide-disulfide oxidoreductase compare
AO353_11185 +0.4 3.6 channel protein TolC compare
AO353_02570 +0.4 1.5 hypothetical protein compare
AO353_23910 +0.4 1.5 response regulator compare
AO353_19040 +0.4 2.8 thioredoxin compare
AO353_15560 +0.4 1.6 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_21300 +0.4 2.3 glycolate oxidase iron-sulfur subunit compare
AO353_26680 +0.4 1.7 hypothetical protein compare
AO353_22150 +0.4 1.2 iron transporter compare
AO353_01220 +0.4 1.4 hypothetical protein compare
AO353_00470 +0.4 1.9 CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase compare
AO353_12695 +0.4 2.7 acyltransferase compare
AO353_06540 +0.4 1.2 hypothetical protein compare
AO353_01405 +0.4 2.5 23S rRNA pseudouridylate synthase compare
AO353_08060 +0.4 1.3 hypothetical protein compare
AO353_15260 +0.4 2.3 stringent starvation protein A compare
AO353_16530 +0.4 0.9 ribonuclease HII compare
AO353_07460 +0.4 1.0 DNA-binding protein compare
AO353_04055 +0.4 1.2 methionine--tRNA ligase compare
AO353_00260 +0.4 1.2 hypothetical protein compare
AO353_21780 +0.4 1.9 Fis family transcriptional regulator compare
AO353_24915 +0.4 1.0 hypothetical protein compare
AO353_22510 +0.4 1.5 hypothetical protein compare
AO353_07700 +0.4 1.6 electron transfer flavoprotein subunit alpha compare
AO353_24090 +0.4 2.6 DNA-binding protein compare
AO353_26085 +0.4 2.1 hypothetical protein compare
AO353_20680 +0.4 1.6 cell division protein compare
AO353_05620 +0.4 1.7 MFS transporter compare
AO353_11330 +0.4 2.1 hypothetical protein compare
AO353_14030 +0.4 3.2 ABC transporter ATP-binding protein compare
AO353_00255 +0.4 1.3 hypothetical protein compare
AO353_24840 +0.4 1.9 acyl-CoA synthetase compare
AO353_25310 +0.4 1.6 malonate carrier protein compare
AO353_27315 +0.4 2.1 hypothetical protein compare
AO353_24200 +0.4 2.0 serine--tRNA ligase compare
AO353_07960 +0.4 2.2 ArsR family transcriptional regulator compare
AO353_25475 +0.4 1.8 multidrug resistance protein compare
AO353_15530 +0.4 2.1 hypothetical protein compare
AO353_11190 +0.4 3.2 ABC transporter compare
AO353_00570 +0.4 2.1 CAAX protease compare
AO353_09660 +0.4 1.0 hypothetical protein compare
AO353_21160 +0.4 1.4 transposase compare
AO353_26160 +0.4 1.8 hypothetical protein compare
AO353_24440 +0.4 0.6 reactive intermediate/imine deaminase compare
AO353_13800 +0.4 1.2 hypothetical protein compare
AO353_18465 +0.4 1.4 phosphohydrolase compare
AO353_02160 +0.4 2.2 polyphosphate kinase compare
AO353_26830 +0.4 1.8 histidine kinase compare
AO353_16300 +0.4 1.8 hypothetical protein compare
AO353_16725 +0.4 2.0 hypothetical protein compare
AO353_22035 +0.4 1.2 pyridoxine 5'-phosphate oxidase compare
AO353_04440 +0.4 1.8 hypothetical protein compare
AO353_24180 +0.4 1.7 transcriptional regulator compare
AO353_12790 +0.4 0.5 hypothetical protein compare
AO353_21030 +0.4 1.4 hypothetical protein compare
AO353_03035 +0.4 1.7 AraC family transcriptional regulator compare
AO353_12555 +0.4 2.3 type II secretion system protein GspF compare
AO353_09485 +0.4 1.8 hypothetical protein compare
AO353_00885 +0.4 1.4 3-methylitaconate isomerase compare
AO353_08595 +0.4 2.3 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO353_18745 +0.4 1.2 flagellar biosynthesis protein flip compare
AO353_15640 +0.4 1.2 acetylornithine aminotransferase compare
AO353_12270 +0.4 1.4 histidine ammonia-lyase compare
AO353_02995 +0.4 2.3 succinylglutamate desuccinylase compare
AO353_25320 +0.4 1.3 phosphoribosyl-dephospho-CoA transferase compare
AO353_14635 +0.4 1.8 cupin compare
AO353_09960 +0.4 2.4 L-asparaginase (EC 3.5.1.1) (from data) compare
AO353_11920 +0.4 1.2 hypothetical protein compare
AO353_03210 +0.4 1.3 GNAT family acetyltransferase compare
AO353_21760 +0.4 2.0 twitching motility protein PilT compare
AO353_21825 +0.4 2.2 GNAT family acetyltransferase compare
AO353_13670 +0.4 1.6 ribosomal protein L11 methyltransferase compare
AO353_03480 +0.4 1.7 carbamate kinase compare
AO353_21900 +0.4 1.9 molybdenum cofactor biosynthesis protein MoaE compare
AO353_19015 +0.4 2.9 hypothetical protein compare
AO353_20005 +0.4 2.1 phosphoribosyl transferase compare
AO353_19180 +0.4 1.3 GAF domain-containing protein compare
AO353_08775 +0.4 0.7 cell division protein ZapA compare
AO353_27220 +0.4 1.3 hypothetical protein compare
AO353_15535 +0.4 1.1 hypothetical protein compare
AO353_00195 +0.4 1.0 virion morphogenesis protein compare
AO353_09600 +0.4 1.7 hypothetical protein compare
AO353_23935 +0.4 1.8 hypothetical protein compare
AO353_03410 +0.4 1.1 chemotaxis protein CheY compare
AO353_02205 +0.4 1.4 hypothetical protein compare
AO353_01185 +0.3 1.9 superfamily II DNA/RNA helicase, SNF2 family protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium succinate dibasic hexahydrate across organisms