Experiment set1IT081 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Nalidixic acid sodium salt 0.008 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23565 +1.2 2.1 NADH dehydrogenase compare
CA265_RS19275 +1.1 2.1 hypothetical protein compare
CA265_RS23305 +1.0 1.8 hypothetical protein compare
CA265_RS23675 +1.0 2.2 hypothetical protein compare
CA265_RS20650 +0.9 1.2 hypothetical protein compare
CA265_RS13195 +0.9 1.7 SAM-dependent methyltransferase compare
CA265_RS18525 +0.9 3.8 four helix bundle protein compare
CA265_RS21670 +0.8 2.5 hypothetical protein compare
CA265_RS24355 +0.8 3.4 transcriptional regulator compare
CA265_RS14825 +0.8 1.6 outer membrane protein assembly factor BamD compare
CA265_RS19140 +0.8 1.9 tRNA-Ile compare
CA265_RS21330 +0.8 5.1 TetR family transcriptional regulator compare
CA265_RS21835 +0.8 2.4 hypothetical protein compare
CA265_RS24815 +0.8 1.5 hypothetical protein compare
CA265_RS21445 +0.7 4.2 exodeoxyribonuclease III compare
CA265_RS04465 +0.7 4.4 PspC family transcriptional regulator compare
CA265_RS19465 +0.7 3.3 protein tyrosine phosphatase compare
CA265_RS20890 +0.7 1.3 MRP family ATP-binding protein compare
CA265_RS00040 +0.7 2.7 hypothetical protein compare
CA265_RS07755 +0.7 1.8 hypothetical protein compare
CA265_RS20355 +0.7 2.6 hypothetical protein compare
CA265_RS23265 +0.7 1.6 iron-binding protein compare
CA265_RS10540 +0.7 1.3 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS12855 +0.7 2.5 hypothetical protein compare
CA265_RS19940 +0.6 5.1 hypothetical protein compare
CA265_RS23230 +0.6 1.5 hypothetical protein compare
CA265_RS02045 +0.6 1.5 hypothetical protein compare
CA265_RS24195 +0.6 4.0 TetR family transcriptional regulator compare
CA265_RS25235 +0.6 3.9 hypothetical protein compare
CA265_RS18275 +0.6 1.9 pyrophosphatase compare
CA265_RS01225 +0.6 2.7 hypothetical protein compare
CA265_RS22355 +0.6 2.8 translation initiation factor compare
CA265_RS10000 +0.6 1.1 nitrite reductase small subunit compare
CA265_RS01320 +0.6 1.0 hypothetical protein compare
CA265_RS17025 +0.6 0.9 hypothetical protein compare
CA265_RS14640 +0.5 1.0 UDP-glucose 4-epimerase compare
CA265_RS04330 +0.5 2.5 transcriptional regulator compare
CA265_RS09445 +0.5 3.9 tetracycline resistance MFS efflux pump compare
CA265_RS24480 +0.5 2.0 hypothetical protein compare
CA265_RS22455 +0.5 3.6 hypothetical protein compare
CA265_RS19535 +0.5 3.7 hypothetical protein compare
CA265_RS19910 +0.5 3.3 GDSL family lipase compare
CA265_RS08445 +0.5 0.9 endonuclease compare
CA265_RS01100 +0.5 3.7 transcriptional regulator compare
CA265_RS22820 +0.5 3.1 flagellar motor protein MotB compare
CA265_RS17885 +0.5 2.6 CopY family transcriptional repressor compare
CA265_RS21665 +0.5 3.8 hypothetical protein compare
CA265_RS15175 +0.5 3.5 thioredoxin-dependent thiol peroxidase compare
CA265_RS17455 +0.5 2.9 hypothetical protein compare
CA265_RS19680 +0.5 3.5 DNA-binding transcriptional regulator OxyR compare
CA265_RS20205 +0.5 2.7 very short patch repair endonuclease compare
CA265_RS00055 +0.5 3.7 hypothetical protein compare
CA265_RS24625 +0.5 3.9 LacI family transcriptional regulator compare
CA265_RS22165 +0.5 0.9 hypothetical protein compare
CA265_RS25375 +0.5 2.3 hypothetical protein compare
CA265_RS23020 +0.5 3.9 hypothetical protein compare
CA265_RS24995 +0.5 2.7 hypothetical protein compare
CA265_RS03595 +0.5 2.5 hydrolase compare
CA265_RS19640 +0.5 2.0 hypothetical protein compare
CA265_RS23155 +0.5 2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS22260 +0.5 2.5 hypothetical protein compare
CA265_RS17420 +0.5 2.7 glyoxalase compare
CA265_RS14485 +0.5 3.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
CA265_RS18420 +0.5 2.4 hypothetical protein compare
CA265_RS25030 +0.5 0.8 hypothetical protein compare
CA265_RS19860 +0.5 2.5 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (from data) compare
CA265_RS19945 +0.5 3.2 hypothetical protein compare
CA265_RS21225 +0.5 3.5 hypothetical protein compare
CA265_RS04835 +0.5 2.4 dihydrodipicolinate synthetase compare
CA265_RS03205 +0.5 2.5 AraC family transcriptional regulator compare
CA265_RS12780 +0.5 1.0 hypothetical protein compare
CA265_RS17955 +0.5 3.4 hypothetical protein compare
CA265_RS25315 +0.5 2.8 phytoene dehydrogenase compare
CA265_RS24435 +0.5 3.3 hypothetical protein compare
CA265_RS19030 +0.5 2.8 hypothetical protein compare
CA265_RS18775 +0.5 2.1 hypothetical protein compare
CA265_RS15035 +0.5 2.0 prevent-host-death protein compare
CA265_RS17560 +0.5 3.2 peptidylprolyl isomerase compare
CA265_RS16105 +0.5 1.3 hypothetical protein compare
CA265_RS16685 +0.5 2.8 ATPase compare
CA265_RS21760 +0.5 1.6 hypothetical protein compare
CA265_RS18415 +0.5 2.6 hypothetical protein compare
CA265_RS04885 +0.5 0.8 tRNA-Gly compare
CA265_RS15165 +0.5 2.6 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
CA265_RS25050 +0.5 2.5 hypothetical protein compare
CA265_RS16940 +0.5 2.0 plasmid stabilization system protein compare
CA265_RS19500 +0.5 2.0 methyltransferase type 11 compare
CA265_RS05940 +0.5 1.1 hypothetical protein compare
CA265_RS25110 +0.5 2.7 polyprenyl synthetase compare
CA265_RS19055 +0.5 3.0 nitronate monooxygenase compare
CA265_RS00025 +0.5 0.9 hypothetical protein compare
CA265_RS25205 +0.5 2.5 hypothetical protein compare
CA265_RS22050 +0.5 1.8 hypothetical protein compare
CA265_RS01955 +0.5 2.4 VapC toxin family PIN domain ribonuclease compare
CA265_RS01975 +0.5 1.4 cell division protein compare
CA265_RS12665 +0.5 0.8 cold-shock protein compare
CA265_RS19685 +0.4 2.1 hypothetical protein compare
CA265_RS20525 +0.4 0.7 hypothetical protein compare
CA265_RS04295 +0.4 0.9 transcriptional regulator compare
CA265_RS24840 +0.4 3.1 hypothetical protein compare
CA265_RS21865 +0.4 3.1 two-component sensor histidine kinase compare
CA265_RS21255 +0.4 3.2 hypothetical protein compare
CA265_RS23865 +0.4 3.2 DNA mismatch repair protein MutS compare
CA265_RS18755 +0.4 1.7 beta-ketoacyl-[acyl-carrier-protein] synthase II compare
CA265_RS21115 +0.4 2.0 hypothetical protein compare
CA265_RS05595 +0.4 2.3 TetR family transcriptional regulator compare
CA265_RS00775 +0.4 2.8 carbonic anhydrase compare
CA265_RS21435 +0.4 1.5 hypothetical protein compare
CA265_RS18495 +0.4 0.8 hypothetical protein compare
CA265_RS20570 +0.4 1.9 hypothetical protein compare
CA265_RS18945 +0.4 2.2 LacI family transcriptional regulator compare
CA265_RS04705 +0.4 2.4 hypothetical protein compare
CA265_RS19405 +0.4 1.9 transcriptional regulator compare
CA265_RS18145 +0.4 2.3 hypothetical protein compare
CA265_RS04290 +0.4 1.3 hypothetical protein compare
CA265_RS11905 +0.4 2.1 hypothetical protein compare
CA265_RS23670 +0.4 2.3 cyclic nucleotide-binding protein compare
CA265_RS18765 +0.4 2.7 hypothetical protein compare
CA265_RS07455 +0.4 1.6 hypothetical protein compare
CA265_RS19445 +0.4 2.5 hypothetical protein compare
CA265_RS04640 +0.4 2.7 efflux transporter periplasmic adaptor subunit compare
CA265_RS20315 +0.4 3.2 hypothetical protein compare
CA265_RS00850 +0.4 2.6 hypothetical protein compare
CA265_RS19645 +0.4 2.2 GNAT family N-acetyltransferase compare
CA265_RS21360 +0.4 1.5 hypothetical protein compare
CA265_RS18950 +0.4 1.9 transcriptional regulator compare
CA265_RS06610 +0.4 3.4 transmembrane HD family protein compare
CA265_RS00085 +0.4 3.0 hypothetical protein compare
CA265_RS18125 +0.4 2.5 gliding motility protein GldL compare
CA265_RS18225 +0.4 2.0 DNA-binding response regulator compare
CA265_RS22450 +0.4 1.4 GntR family transcriptional regulator compare
CA265_RS20920 +0.4 1.7 hypothetical protein compare
CA265_RS14845 +0.4 3.1 transcriptional regulator compare
CA265_RS04335 +0.4 3.0 hypothetical protein compare
CA265_RS11925 +0.4 1.6 hypothetical protein compare
CA265_RS06765 +0.4 2.5 hypothetical protein compare
CA265_RS15840 +0.4 2.1 3-isopropylmalate dehydratase small subunit compare
CA265_RS20980 +0.4 2.1 6-phosphofructokinase compare
CA265_RS22045 +0.4 1.9 hypothetical protein compare
CA265_RS10615 +0.4 1.5 diacylglycerol kinase compare
CA265_RS19455 +0.4 2.9 hypothetical protein compare
CA265_RS16020 +0.4 2.3 ABC transporter ATP-binding protein compare
CA265_RS09725 +0.4 3.6 tolB protein precursor compare
CA265_RS17555 +0.4 2.6 hypothetical protein compare
CA265_RS25435 +0.4 1.3 hypothetical protein compare
CA265_RS03210 +0.4 2.0 hypothetical protein compare
CA265_RS00925 +0.4 1.6 hypothetical protein compare
CA265_RS22895 +0.4 1.3 aminodeoxychorismate/anthranilate synthase component II compare
CA265_RS09355 +0.4 1.7 endonuclease V compare
CA265_RS02315 +0.4 0.9 single-stranded DNA-binding protein compare
CA265_RS25255 +0.4 2.2 methyltransferase type 11 compare
CA265_RS17390 +0.4 2.5 PadR family transcriptional regulator compare
CA265_RS19625 +0.4 1.8 hypothetical protein compare
CA265_RS22805 +0.4 2.2 glycosyl transferase compare
CA265_RS17595 +0.4 2.2 MarR family transcriptional regulator compare
CA265_RS22860 +0.4 1.6 hypothetical protein compare
CA265_RS18460 +0.4 2.3 nucleotidyltransferase compare
CA265_RS21215 +0.4 3.2 hypothetical protein compare
CA265_RS24755 +0.4 1.5 hypothetical protein compare
CA265_RS21765 +0.4 2.0 hypothetical protein compare
CA265_RS22180 +0.4 2.2 hypothetical protein compare
CA265_RS08720 +0.4 2.4 hypothetical protein compare
CA265_RS04585 +0.4 1.9 GNAT family N-acetyltransferase compare
CA265_RS15280 +0.4 1.9 glycine C-acetyltransferase compare
CA265_RS20475 +0.4 1.2 hypothetical protein compare
CA265_RS16725 +0.4 1.7 hypothetical protein compare
CA265_RS02425 +0.4 1.5 GTP cyclohydrolase compare
CA265_RS24360 +0.4 1.5 ATPase compare
CA265_RS10020 +0.4 2.2 hypothetical protein compare
CA265_RS01835 +0.4 2.0 hypothetical protein compare
CA265_RS03665 +0.4 1.4 hypothetical protein compare
CA265_RS13620 +0.4 2.0 hypothetical protein compare
CA265_RS18150 +0.4 2.9 hypothetical protein compare
CA265_RS09280 +0.4 1.7 diguanylate cyclase compare
CA265_RS19540 +0.4 2.8 tail-specific protease compare
CA265_RS25395 +0.4 1.8 cysteine hydrolase compare
CA265_RS24800 +0.4 1.2 hypothetical protein compare
CA265_RS24650 +0.4 1.3 beta-phosphoglucomutase compare
CA265_RS21645 +0.4 2.3 response regulator compare
CA265_RS16295 +0.4 2.4 LacI family transcriptional regulator compare
CA265_RS22930 +0.4 2.2 hypothetical protein compare
CA265_RS20565 +0.4 1.7 metallophosphoesterase compare
CA265_RS14305 +0.4 2.4 restriction endonuclease compare
CA265_RS18120 +0.4 2.6 gliding motility protein GldM compare
CA265_RS24215 +0.4 1.6 hypothetical protein compare
CA265_RS19450 +0.4 2.1 hypothetical protein compare
CA265_RS25180 +0.4 1.8 hypothetical protein compare
CA265_RS01345 +0.4 2.5 PAS domain-containing sensor histidine kinase compare
CA265_RS10030 +0.4 2.0 hypothetical protein compare
CA265_RS10005 +0.4 1.9 hypothetical protein compare
CA265_RS16820 +0.3 1.3 type I methionyl aminopeptidase compare
CA265_RS17905 +0.3 2.4 hypothetical protein compare
CA265_RS15865 +0.3 0.8 cupin compare
CA265_RS18115 +0.3 2.3 gliding motility protein GldN compare
CA265_RS23945 +0.3 1.7 hypothetical protein compare
CA265_RS12800 +0.3 1.2 NAD(P)H-dependent oxidoreductase compare
CA265_RS06585 +0.3 2.3 hypothetical protein compare
CA265_RS21425 +0.3 2.5 hypothetical protein compare
CA265_RS10665 +0.3 2.0 Rossman fold protein, TIGR00730 family compare
CA265_RS07880 +0.3 2.7 transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nalidixic acid sodium salt in Pedobacter sp. GW460-11-11-14-LB5

For stress Nalidixic acid sodium salt across organisms