Experiment set1IT081 for Pantoea sp. MT58

Compare to:

copper (II) chloride dihydrate 2 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -5.0 -2.2 Tol-Pal system protein TolB compare
IAI47_21880 -4.3 -0.7 ParA family protein compare
IAI47_08085 -4.1 -7.0 helix-turn-helix domain-containing protein compare
IAI47_00770 -3.7 -0.6 general stress protein compare
IAI47_13690 -3.5 -0.6 cell envelope integrity protein TolA compare
IAI47_05070 -3.0 -0.5 outer membrane protein assembly factor BamB compare
IAI47_13695 -3.0 -0.5 colicin uptake protein TolR compare
IAI47_11475 -2.8 -0.7 hypothetical protein compare
IAI47_19690 -2.8 -0.9 hypothetical protein compare
IAI47_00760 -2.7 -3.1 envelope stress response regulator transcription factor CpxR compare
IAI47_13700 -2.6 -3.8 Tol-Pal system protein TolQ compare
IAI47_12645 -2.6 -4.6 porin OmpA compare
IAI47_10835 -2.5 -0.6 tRNA-Val compare
IAI47_00780 -2.5 -3.6 6-phosphofructokinase compare
IAI47_11425 -2.3 -4.0 hypothetical protein compare
IAI47_06235 -2.3 -7.2 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_07165 -2.2 -1.3 exodeoxyribonuclease I compare
IAI47_18215 -2.2 -1.0 Trk system potassium transporter TrkH compare
IAI47_06565 -2.1 -1.1 YejL family protein compare
IAI47_05580 -2.1 -0.9 membrane protein YpdK compare
IAI47_18270 -2.1 -4.2 twin-arginine translocase TatA/TatE family subunit compare
IAI47_12925 -2.1 -3.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_18265 -2.1 -1.2 Sec-independent protein translocase subunit TatB compare
IAI47_20290 -2.0 -4.3 XapX domain-containing protein compare
IAI47_07480 -2.0 -1.6 hypothetical protein compare
IAI47_16350 -1.9 -8.6 phosphoserine phosphatase compare
IAI47_11760 -1.9 -0.7 TonB-dependent siderophore receptor compare
IAI47_13935 -1.9 -0.6 tRNA-Gln compare
IAI47_05520 -1.9 -0.6 tRNA-Ala compare
IAI47_14730 -1.9 -0.6 exodeoxyribonuclease VII small subunit compare
IAI47_09165 -1.8 -6.8 tryptophan synthase subunit alpha compare
IAI47_01050 -1.8 -11.4 ketol-acid reductoisomerase compare
IAI47_07080 -1.8 -7.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_19890 -1.8 -1.6 hypothetical protein compare
IAI47_17965 -1.8 -9.4 glucose-6-phosphate isomerase compare
IAI47_10555 -1.8 -3.0 hypothetical protein compare
IAI47_07070 -1.7 -5.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_15995 -1.7 -1.0 leu operon leader peptide compare
IAI47_09265 -1.7 -2.3 LapA family protein compare
IAI47_01940 -1.7 -2.1 DUF2559 family protein compare
IAI47_16205 -1.7 -5.0 threonine synthase compare
IAI47_12865 -1.7 -7.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_04160 -1.7 -8.3 phosphoadenylyl-sulfate reductase compare
IAI47_01040 -1.7 -6.8 threonine ammonia-lyase, biosynthetic compare
IAI47_07475 -1.7 -0.6 hypothetical protein compare
IAI47_19035 -1.7 -1.2 transcriptional regulator compare
IAI47_00870 -1.7 -0.4 50S ribosomal protein L31 compare
IAI47_20705 -1.7 -0.6 sulfur carrier protein ThiS compare
IAI47_08445 -1.7 -0.6 Holliday junction branch migration protein RuvA compare
IAI47_01035 -1.6 -10.4 dihydroxy-acid dehydratase compare
IAI47_17220 -1.6 -12.9 glutamate synthase large subunit compare
IAI47_09180 -1.6 -8.1 anthranilate phosphoribosyltransferase compare
IAI47_09175 -1.6 -7.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_14470 -1.6 -1.3 YbaB/EbfC family nucleoid-associated protein compare
IAI47_15110 -1.6 -2.9 chromophore lyase compare
IAI47_15810 -1.6 -2.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_17225 -1.6 -10.6 sulfite reductase subunit alpha compare
IAI47_17475 -1.6 -3.1 type VI secretion system contractile sheath small subunit compare
IAI47_09190 -1.6 -7.9 anthranilate synthase component 1 compare
IAI47_00895 -1.6 -10.3 phosphoenolpyruvate carboxylase compare
IAI47_04705 -1.5 -0.6 hypothetical protein compare
IAI47_09580 -1.5 -1.9 FNR family transcription factor compare
IAI47_15595 -1.5 -0.8 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_07095 -1.5 -6.5 ATP phosphoribosyltransferase compare
IAI47_15605 -1.5 -0.8 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_17185 -1.5 -3.8 RNA polymerase factor sigma-54 compare
IAI47_01030 -1.5 -8.6 branched-chain amino acid transaminase compare
IAI47_14945 -1.5 -2.4 pyrroline-5-carboxylate reductase compare
IAI47_07060 -1.5 -7.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_15970 -1.5 -1.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_21680 -1.5 -2.6 hypothetical protein compare
IAI47_16015 -1.5 -3.4 3-isopropylmalate dehydratase small subunit compare
IAI47_00915 -1.5 -8.7 argininosuccinate synthase compare
IAI47_10825 -1.5 -0.8 tRNA-Val compare
IAI47_00920 -1.4 -8.5 argininosuccinate lyase compare
IAI47_08850 -1.4 -3.7 septum site-determining protein MinD compare
IAI47_21355 -1.4 -1.9 DUF3606 domain-containing protein compare
IAI47_03725 -1.4 -5.3 phosphoglycerate dehydrogenase compare
IAI47_12110 -1.4 -2.2 ribonuclease E compare
IAI47_07000 -1.4 -5.8 UDP-glucose 4-epimerase GalE compare
IAI47_05475 -1.4 -3.3 FlxA-like family protein compare
IAI47_15115 -1.4 -6.4 glutamate-5-semialdehyde dehydrogenase compare
IAI47_03860 -1.4 -6.6 diaminopimelate decarboxylase compare
IAI47_07065 -1.4 -6.2 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_09170 -1.4 -7.3 tryptophan synthase subunit beta compare
IAI47_15120 -1.4 -4.6 glutamate 5-kinase compare
IAI47_07360 -1.4 -1.3 hypothetical protein compare
IAI47_15635 -1.3 -1.2 RNA polymerase-binding protein DksA compare
IAI47_00880 -1.3 -8.0 cystathionine gamma-synthase compare
IAI47_16080 -1.3 -5.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_19430 -1.3 -1.9 GNAT family N-acetyltransferase compare
IAI47_16005 -1.3 -5.9 3-isopropylmalate dehydrogenase compare
IAI47_16115 -1.3 -9.4 carbamoyl-phosphate synthase large subunit compare
IAI47_07085 -1.3 -7.1 histidinol-phosphate transaminase compare
IAI47_01180 -1.3 -0.6 prolyl oligopeptidase family serine peptidase compare
IAI47_10255 -1.3 -2.5 isochorismatase family protein compare
IAI47_17560 -1.3 -0.5 ROK family transcriptional regulator compare
IAI47_14075 -1.3 -1.2 transcription antiterminator/RNA stability regulator CspE compare
IAI47_16120 -1.3 -5.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_18715 -1.3 -0.9 YibL family ribosome-associated protein compare
IAI47_08745 -1.3 -1.1 transcription antiterminator/RNA stability regulator CspE compare
IAI47_01135 -1.3 -0.3 hypothetical protein compare
IAI47_11880 -1.3 -1.0 hypothetical protein compare
IAI47_18520 -1.3 -7.0 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_17020 -1.3 -1.8 30S ribosome-binding factor RbfA compare
IAI47_13900 -1.3 -8.2 asparagine synthase B compare
IAI47_02585 -1.3 -2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_13710 -1.3 -2.2 cyd operon protein YbgE compare
IAI47_16520 -1.2 -5.9 hypothetical protein compare
IAI47_12915 -1.2 -6.8 leucine-responsive transcriptional regulator Lrp compare
IAI47_00905 -1.2 -6.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_07075 -1.2 -5.3 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_03135 -1.2 -3.9 outer membrane channel protein TolC compare
IAI47_07090 -1.2 -4.9 histidinol dehydrogenase compare
IAI47_16210 -1.2 -5.2 homoserine kinase compare
IAI47_08165 -1.2 -4.9 flagella biosynthesis regulatory protein FliZ compare
IAI47_18405 -1.2 -2.9 DUF484 domain-containing protein compare
IAI47_01335 -1.2 -3.7 CPBP family intramembrane metalloprotease compare
IAI47_13705 -1.1 -3.2 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_05490 -1.1 -2.9 tRNA-Val compare
IAI47_00890 -1.1 -5.3 methylenetetrahydrofolate reductase compare
IAI47_18015 -1.1 -6.8 homoserine O-succinyltransferase compare
IAI47_00835 -1.1 -1.9 cell division protein ZapB compare
IAI47_16010 -1.1 -7.0 3-isopropylmalate dehydratase large subunit compare
IAI47_10050 -1.1 -1.6 hypothetical protein compare
IAI47_06380 -1.1 -0.9 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_10520 -1.1 -1.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_13925 -1.1 -0.7 tRNA-Met compare
IAI47_11770 -1.1 -3.8 flagellar brake protein compare
IAI47_18040 -1.1 -7.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_11450 -1.1 -3.8 ankyrin repeat domain-containing protein compare
IAI47_09310 -1.1 -2.6 YbdD/YjiX family protein compare
IAI47_16255 -1.1 -3.4 trp operon repressor compare
IAI47_02695 -1.1 -5.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_03615 -1.1 -4.4 glutathione synthase compare
IAI47_05120 -1.1 -1.7 DUF2158 domain-containing protein compare
IAI47_06730 -1.1 -4.1 HTH-type transcriptional regulator GalS compare
IAI47_21115 -1.0 -1.7 arsenate reductase (glutaredoxin) compare
IAI47_16725 -1.0 -3.9 DUF445 domain-containing protein compare
IAI47_05035 -1.0 -1.1 nucleoside-diphosphate kinase compare
IAI47_10550 -1.0 -2.3 two-component-system connector protein YcgZ compare
IAI47_11310 -1.0 -2.0 redox-regulated ATPase YchF compare
IAI47_16250 -1.0 -2.4 inosine/xanthosine triphosphatase compare
IAI47_10525 -1.0 -4.6 MliC family protein compare
IAI47_06240 -1.0 -2.9 aspartate-semialdehyde dehydrogenase compare
IAI47_10775 -1.0 -2.8 ribonuclease T compare
IAI47_10925 -1.0 -2.0 EAL domain-containing protein compare
IAI47_11930 -1.0 -2.6 two-component system response regulator PhoP compare
IAI47_15880 -1.0 -1.4 DNA gyrase inhibitor YacG compare
IAI47_03595 -1.0 -3.5 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_09300 -1.0 -2.6 crotonase/enoyl-CoA hydratase family protein compare
IAI47_11670 -1.0 -4.0 type VI secretion system protein TssA compare
IAI47_12215 -1.0 -5.9 dihydroorotase compare
IAI47_05420 -1.0 -0.4 PTS glucose transporter subunit IIA compare
IAI47_20300 -1.0 -3.8 hydrolase compare
IAI47_02345 -1.0 -0.5 5S ribosomal RNA compare
IAI47_12420 -1.0 -3.2 hypothetical protein compare
IAI47_05275 -1.0 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_03975 -1.0 -5.9 amino-acid N-acetyltransferase compare
IAI47_06080 -1.0 -2.0 heme exporter protein CcmD compare
IAI47_00485 -1.0 -5.5 fatty acid biosynthesis protein FabY compare
IAI47_03095 -1.0 -4.5 inorganic triphosphatase compare
IAI47_08045 -1.0 -1.2 NUDIX domain-containing protein compare
IAI47_08340 -1.0 -2.6 protein phosphatase CheZ compare
IAI47_07965 -1.0 -2.6 transcriptional regulator RcsA compare
IAI47_06245 -0.9 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_03575 -0.9 -2.4 DUF2884 domain-containing protein compare
IAI47_12705 -0.9 -5.4 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_15305 -0.9 -1.7 allantoin racemase compare
IAI47_07015 -0.9 -3.1 ABC transporter ATP-binding protein compare
IAI47_07025 -0.9 -2.1 glycosyltransferase family 4 protein compare
IAI47_17900 -0.9 -0.5 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_19030 -0.9 -1.6 hypothetical protein compare
IAI47_12480 -0.9 -5.8 autoinducer synthase compare
IAI47_13540 -0.9 -3.3 kinase inhibitor compare
IAI47_17880 -0.9 -2.2 CsbD family protein compare
IAI47_07885 -0.9 -0.4 tRNA-Asn compare
IAI47_02685 -0.9 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_06595 -0.9 -1.5 hypothetical protein compare
IAI47_16215 -0.9 -6.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_08845 -0.9 -0.6 cell division topological specificity factor MinE compare
IAI47_05290 -0.9 -3.4 esterase compare
IAI47_05180 -0.9 -5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_04410 -0.9 -6.0 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_13480 -0.9 -1.2 molybdopterin synthase sulfur carrier subunit compare
IAI47_08080 -0.9 -1.9 hypothetical protein compare
IAI47_11605 -0.9 -2.1 hypothetical protein compare
IAI47_04120 -0.9 -6.0 GTP diphosphokinase compare
IAI47_14060 -0.9 -2.0 twin-arginine translocase subunit TatE compare
IAI47_16830 -0.9 -5.3 ornithine carbamoyltransferase compare
IAI47_01330 -0.9 -3.5 ribonuclease Z compare
IAI47_00125 -0.9 -3.7 sugar phosphate isomerase/epimerase compare
IAI47_13265 -0.9 -1.6 HutD family protein compare
IAI47_15460 -0.9 -2.4 ribonuclease HII compare
IAI47_14785 -0.9 -2.8 DUF3251 domain-containing protein compare
IAI47_00900 -0.9 -4.7 acetylornithine deacetylase compare
IAI47_09400 -0.9 -1.8 envelope stress response membrane protein PspB compare
IAI47_07525 -0.9 -1.4 conjugal transfer protein TraD compare
IAI47_11500 -0.9 -1.2 type VI secretion system tip protein VgrG compare
IAI47_11520 -0.9 -1.5 type VI secretion system tip protein VgrG compare


Specific Phenotypes

For 5 genes in this experiment

For stress copper (II) chloride dihydrate in Pantoea sp. MT58

For stress copper (II) chloride dihydrate across organisms