Experiment set1IT081 for Pantoea sp. MT58

Compare to:

copper (II) chloride dihydrate 2 uM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_01820 +6.6 51.0 two-component system response regulator OmpR compare
IAI47_12760 +5.8 51.0 porin OmpF compare
IAI47_00655 +4.9 30.4 glycosyltransferase family 4 protein compare
IAI47_01825 +4.8 29.1 two-component system sensor histidine kinase EnvZ compare
IAI47_05385 +4.6 43.1 sulfate ABC transporter substrate-binding protein compare
IAI47_05400 +4.5 34.4 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI47_05390 +4.5 35.7 sulfate/thiosulfate ABC transporter permease CysT compare
IAI47_05395 +4.4 39.6 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_09040 +4.3 8.6 NAD-dependent epimerase compare
IAI47_00785 +3.7 33.3 sulfate ABC transporter substrate-binding protein compare
IAI47_16995 +3.0 2.3 protein YrbN compare
IAI47_05405 +2.9 18.9 cysteine synthase CysM compare
IAI47_14400 +2.9 22.2 copper-exporting P-type ATPase CopA conserved
IAI47_06325 +2.8 14.7 acetate kinase compare
IAI47_03195 +2.5 3.4 cell division protein FtsP compare
IAI47_12175 +2.4 2.3 anti-sigma-28 factor FlgM compare
IAI47_14555 +2.4 2.0 hemolysin expression modulator Hha compare
IAI47_05745 +2.2 2.3 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_01740 +2.1 2.2 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_06855 +2.1 12.6 two-component system sensor histidine kinase BaeS compare
IAI47_05815 +2.1 2.4 hypothetical protein compare
IAI47_10725 +2.0 1.7 DUF1656 domain-containing protein compare
IAI47_17235 +2.0 16.0 stringent starvation protein A compare
IAI47_02895 +2.0 12.1 DedA family protein compare
IAI47_09550 +2.0 4.4 hypothetical protein compare
IAI47_04450 +2.0 1.5 tRNA-Ala compare
IAI47_09360 +2.0 1.7 peptide ABC transporter ATP-binding protein SapF compare
IAI47_19295 +1.9 1.6 hypothetical protein compare
IAI47_13155 +1.9 2.8 H-NS histone family protein compare
IAI47_08135 +1.9 5.1 flagellar export chaperone FliS compare
IAI47_18595 +1.8 11.3 endoglucanase compare
IAI47_10435 +1.8 3.6 transcription modulator YdgT compare
IAI47_06320 +1.8 10.7 phosphate acetyltransferase compare
IAI47_09795 +1.7 2.7 DUF1283 family protein compare
IAI47_09480 +1.7 2.3 hypothetical protein compare
IAI47_04185 +1.7 14.3 sulfate adenylyltransferase subunit CysN compare
IAI47_03610 +1.6 2.7 YqgE/AlgH family protein compare
IAI47_04180 +1.6 12.8 sulfate adenylyltransferase subunit CysD compare
IAI47_13320 +1.6 2.8 ABC transporter ATP-binding protein compare
IAI47_05090 +1.6 1.7 hypothetical protein compare
IAI47_13065 +1.6 1.6 DUF1418 family protein compare
IAI47_18055 +1.6 10.5 DNA-binding protein HU-alpha compare
IAI47_17035 +1.5 1.9 ribosome maturation factor RimP compare
IAI47_20850 +1.5 2.5 TetR/AcrR family transcriptional regulator compare
IAI47_01625 +1.5 2.0 GNAT family N-acetyltransferase compare
IAI47_03880 +1.5 2.4 PTS sugar transporter subunit IIB compare
IAI47_04070 +1.5 2.7 flavodoxin compare
IAI47_08605 +1.4 1.5 hypothetical protein compare
IAI47_12245 +1.4 2.6 YceI family protein compare
IAI47_09720 +1.3 7.4 TetR/AcrR family transcriptional regulator compare
IAI47_20625 +1.3 1.9 DUF2946 domain-containing protein compare
IAI47_14920 +1.3 2.5 pyrimidine/purine nucleoside phosphorylase compare
IAI47_13645 +1.3 3.1 helix-turn-helix domain-containing protein compare
IAI47_11845 +1.3 2.1 hypothetical protein compare
IAI47_17875 +1.3 6.2 zinc uptake transcriptional repressor Zur compare
IAI47_08730 +1.3 2.1 YebO family protein compare
IAI47_13215 +1.3 3.6 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF compare
IAI47_05130 +1.3 2.6 DNA-binding protein compare
IAI47_03170 +1.3 1.9 antibiotic biosynthesis monooxygenase compare
IAI47_05540 +1.2 2.6 DUF2502 domain-containing protein compare
IAI47_17705 +1.2 2.3 helix-turn-helix transcriptional regulator compare
IAI47_02890 +1.2 3.7 EnvZ/OmpR regulon moderator MzrA compare
IAI47_12555 +1.2 2.2 hypothetical protein compare
IAI47_06455 +1.2 3.5 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_14690 +1.2 2.8 cytochrome o ubiquinol oxidase subunit III compare
IAI47_04335 +1.2 1.6 tRNA-Arg compare
IAI47_04175 +1.2 8.3 uroporphyrinogen-III C-methyltransferase compare
IAI47_10455 +1.2 1.9 electron transport complex subunit RsxC compare
IAI47_05765 +1.2 1.4 hypothetical protein compare
IAI47_06120 +1.2 1.3 YfcZ/YiiS family protein compare
IAI47_06840 +1.2 3.0 lipid kinase YegS compare
IAI47_14960 +1.2 1.4 anti-adapter protein IraP compare
IAI47_11630 +1.2 0.9 hypothetical protein compare
IAI47_05370 +1.2 2.7 GNAT family acetyltransferase compare
IAI47_14745 +1.2 3.9 aldo/keto reductase compare
IAI47_11870 +1.2 1.9 DUF2767 family protein compare
IAI47_05425 +1.1 4.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_06940 +1.1 0.6 tyrosine-protein kinase Wzc compare
IAI47_11180 +1.1 2.4 nitrate ABC transporter permease compare
IAI47_03745 +1.1 2.5 YecA family protein compare
IAI47_19750 +1.1 1.8 GNAT family N-acetyltransferase compare
IAI47_09305 +1.1 2.3 cyclic di-GMP phosphodiesterase compare
IAI47_03570 +1.1 2.3 YggL family protein compare
IAI47_03810 +1.1 1.9 hypothetical protein compare
IAI47_16085 +1.1 1.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_03630 +1.1 1.8 SprT family zinc-dependent metalloprotease compare
IAI47_01610 +1.1 1.6 glycerophosphodiester phosphodiesterase compare
IAI47_12635 +1.1 3.6 TfoX/Sxy family DNA transformation protein compare
IAI47_13740 +1.1 0.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_14115 +1.1 2.4 hypothetical protein compare
IAI47_14980 +1.1 1.9 hypothetical protein compare
IAI47_02505 +1.1 2.0 DUF1471 domain-containing protein compare
IAI47_11200 +1.1 1.6 DotU family type IV/VI secretion system protein compare
IAI47_03490 +1.1 1.1 hypothetical protein compare
IAI47_17365 +1.1 2.4 type VI secretion system lipoprotein TssJ compare
IAI47_12115 +1.0 3.0 flagellar hook-associated protein FlgL compare
IAI47_17230 +1.0 4.0 ClpXP protease specificity-enhancing factor compare
IAI47_10295 +1.0 2.5 hypothetical protein compare
IAI47_01945 +1.0 3.0 putative adenosine monophosphate-protein transferase Fic compare
IAI47_08185 +1.0 2.7 L-cystine ABC transporter ATP-binding protein YecC compare
IAI47_11545 +1.0 1.6 hypothetical protein compare
IAI47_18410 +1.0 1.5 diaminopimelate epimerase compare
IAI47_00465 +1.0 3.0 ribosome-dependent GTPase TypA compare
IAI47_11510 +1.0 2.0 hypothetical protein compare
IAI47_12640 +1.0 3.4 cell division inhibitor SulA compare
IAI47_00345 +1.0 2.8 YgiW/YdeI family stress tolerance OB fold protein compare
IAI47_20650 +1.0 1.7 polyprenyl synthetase family protein compare
IAI47_08635 +1.0 1.5 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI47_18420 +1.0 4.8 class I adenylate cyclase compare
IAI47_15425 +1.0 2.2 Rho-binding antiterminator compare
IAI47_05955 +1.0 1.7 hypothetical protein compare
IAI47_14290 +1.0 2.6 type VI secretion system contractile sheath small subunit compare
IAI47_08550 +1.0 3.1 hypothetical protein compare
IAI47_09845 +1.0 1.9 hypothetical protein compare
IAI47_19400 +1.0 2.1 nucleotidyltransferase family protein compare
IAI47_16090 +1.0 3.0 Co2+/Mg2+ efflux protein ApaG compare
IAI47_13015 +1.0 2.9 arginine ABC transporter substrate-binding protein compare
IAI47_10535 +1.0 2.4 YgdI/YgdR family lipoprotein compare
IAI47_01840 +0.9 1.6 ribosome-associated heat shock protein Hsp15 compare
IAI47_04100 +0.9 2.4 2-hydroxy-3-oxopropionate reductase compare
IAI47_17975 +0.9 3.1 YjbF family lipoprotein compare
IAI47_14145 +0.9 1.7 hypothetical protein compare
IAI47_09990 +0.9 2.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
IAI47_08840 +0.9 2.5 ribonuclease D compare
IAI47_14940 +0.9 1.4 YaiI/YqxD family protein compare
IAI47_11625 +0.9 0.7 DUF1311 domain-containing protein compare
IAI47_07450 +0.9 1.0 winged helix-turn-helix domain-containing protein compare
IAI47_15645 +0.9 2.9 polynucleotide adenylyltransferase PcnB compare
IAI47_06205 +0.9 2.1 tripartite tricarboxylate transporter TctB family protein compare
IAI47_03715 +0.9 3.2 LysR family transcriptional regulator ArgP compare
IAI47_03805 +0.9 2.4 FAD assembly factor SdhE compare
IAI47_06010 +0.9 1.8 hypothetical protein compare
IAI47_00945 +0.9 1.4 YijD family membrane protein compare
IAI47_09835 +0.9 2.5 FAD-dependent urate hydroxylase HpxO compare
IAI47_07925 +0.9 1.8 DUF808 family protein compare
IAI47_12360 +0.9 2.8 acyl-CoA synthetase compare
IAI47_07495 +0.9 2.4 hypothetical protein compare
IAI47_17080 +0.9 2.7 transcription elongation factor GreA compare
IAI47_15255 +0.9 1.7 amino acid ABC transporter ATP-binding protein compare
IAI47_20575 +0.9 2.8 YbhB/YbcL family Raf kinase inhibitor-like protein compare
IAI47_13500 +0.9 2.6 uridine diphosphate-N-acetylglucosamine-binding protein YvcK compare
IAI47_08530 +0.9 1.5 copper homeostasis periplasmic binding protein CopC compare
IAI47_10430 +0.9 1.1 hypothetical protein compare
IAI47_21285 +0.9 2.4 amidohydrolase compare
IAI47_08140 +0.9 3.7 flagellar filament capping protein FliD compare
IAI47_08335 +0.9 2.1 chemotaxis response regulator CheY compare
IAI47_14460 +0.9 3.8 molecular chaperone HtpG compare
IAI47_21500 +0.9 3.5 H-NS histone family protein compare
IAI47_11860 +0.9 2.3 hypothetical protein compare
IAI47_18540 +0.9 2.0 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_12955 +0.9 1.7 cold shock-like protein CspD compare
IAI47_10595 +0.9 2.5 hypothetical protein compare
IAI47_09390 +0.9 2.6 phage shock protein operon transcriptional activator compare
IAI47_08480 +0.9 3.5 MFS transporter compare
IAI47_04720 +0.9 2.4 endonuclease/exonuclease/phosphatase family protein compare
IAI47_13300 +0.9 1.4 GNAT family N-acetyltransferase compare
IAI47_10750 +0.9 2.1 aldo/keto reductase family oxidoreductase compare
IAI47_10100 +0.9 1.6 ABC transporter ATP-binding protein compare
IAI47_04775 +0.9 1.2 SIR2 family protein compare
IAI47_05190 +0.9 3.0 uracil permease compare
IAI47_18590 +0.9 3.7 biofilm formation regulator HmsP compare
IAI47_04830 +0.9 1.9 autonomous glycyl radical cofactor GrcA compare
IAI47_01080 +0.8 2.9 glutathione S-transferase compare
IAI47_17710 +0.8 4.0 glutamate/aspartate:proton symporter GltP compare
IAI47_16560 +0.8 2.5 hypothetical protein compare
IAI47_06040 +0.8 0.8 DNA polymerase V compare
IAI47_16135 +0.8 1.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_13050 +0.8 1.3 YbjN domain-containing protein compare
IAI47_14280 +0.8 2.3 type VI secretion system tube protein Hcp compare
IAI47_07780 +0.8 1.5 phosphonate C-P lyase system protein PhnL compare
IAI47_10930 +0.8 2.4 C40 family peptidase compare
IAI47_07395 +0.8 2.1 RidA family protein compare
IAI47_15745 +0.8 2.4 dihydrodipicolinate synthase family protein compare
IAI47_11080 +0.8 2.4 N-succinylarginine dihydrolase compare
IAI47_07055 +0.8 1.6 YbaK/prolyl-tRNA synthetase associated domain-containing protein compare
IAI47_13850 +0.8 2.1 LexA regulated protein compare
IAI47_08595 +0.8 3.6 replication endonuclease compare
IAI47_09950 +0.8 2.9 hypothetical protein compare
IAI47_12240 +0.8 2.4 cytochrome b compare
IAI47_19365 +0.8 1.4 DUF1471 domain-containing protein compare
IAI47_17650 +0.8 3.5 MFS transporter compare
IAI47_18985 +0.8 1.5 MarR family transcriptional regulator compare
IAI47_17565 +0.8 1.3 N-acetylglucosamine kinase compare
IAI47_08760 +0.8 2.8 PTS mannose transporter subunit IID compare
IAI47_17610 +0.8 3.6 two-component sensor histidine kinase compare
IAI47_05740 +0.8 1.7 DUF5444 family protein compare
IAI47_14935 +0.8 2.2 DUF2076 domain-containing protein compare
IAI47_06190 +0.8 1.5 rhodanese compare
IAI47_11375 +0.8 0.9 hypothetical protein compare
IAI47_10545 +0.8 1.5 hypothetical protein compare
IAI47_18490 +0.8 1.3 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_02770 +0.8 1.4 cytochrome b562 compare
IAI47_11650 +0.8 2.5 type VI secretion system tube protein Hcp compare
IAI47_16750 +0.8 2.8 substrate-binding domain-containing protein compare
IAI47_12270 +0.8 2.0 YceK/YidQ family lipoprotein compare
IAI47_14480 +0.8 2.3 adenine phosphoribosyltransferase compare
IAI47_06045 +0.8 1.8 phage repressor protein compare
IAI47_16810 +0.8 2.9 hypothetical protein compare
IAI47_12300 +0.8 1.0 hypothetical protein compare
IAI47_02840 +0.8 1.3 YraN family protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress copper (II) chloride dihydrate in Pantoea sp. MT58

For stress copper (II) chloride dihydrate across organisms