Experiment set1IT081 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Arabinose 20 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS18775 +7.1 54.5 S9 family peptidase compare
HMPREF1058_RS18770 +5.8 3.6 hypothetical protein compare
HMPREF1058_RS12905 +5.2 30.3 kinase compare
HMPREF1058_RS07625 +4.8 22.2 hypothetical protein compare
HMPREF1058_RS13735 +4.4 13.1 hypothetical protein compare
HMPREF1058_RS09185 +3.7 12.0 DUF4252 domain-containing protein compare
HMPREF1058_RS03890 +3.6 10.0 phosphatidylinositol-4-phosphate 5-kinase compare
HMPREF1058_RS03510 +3.5 15.5 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS07245 +3.4 13.5 Rne/Rng family ribonuclease compare
HMPREF1058_RS14050 +2.7 12.1 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS03885 +2.7 7.1 insulinase family protein compare
HMPREF1058_RS14035 +2.7 4.0 hypothetical protein compare
HMPREF1058_RS05920 +2.5 2.2 hypothetical protein compare
HMPREF1058_RS09180 +2.3 10.1 hypothetical protein compare
HMPREF1058_RS05925 +2.2 3.3 DUF5024 domain-containing protein compare
HMPREF1058_RS06080 +1.9 10.7 glutamine synthetase III compare
HMPREF1058_RS04350 +1.9 8.9 C1 family peptidase compare
HMPREF1058_RS06160 +1.5 5.7 formyltetrahydrofolate deformylase compare
HMPREF1058_RS12525 +1.5 5.3 Na/Pi cotransporter family protein compare
HMPREF1058_RS01695 +1.4 6.9 LacI family DNA-binding transcriptional regulator compare
HMPREF1058_RS18090 +1.4 3.1 hemerythrin domain-containing protein compare
HMPREF1058_RS01995 +1.3 2.9 hypothetical protein compare
HMPREF1058_RS01355 +1.3 4.4 hypothetical protein compare
HMPREF1058_RS03770 +1.3 7.2 RNA polymerase sigma factor compare
HMPREF1058_RS10290 +1.3 3.6 hypothetical protein compare
HMPREF1058_RS03075 +1.3 7.3 DNA helicase RecQ compare
HMPREF1058_RS03095 +1.2 3.3 RNA-binding protein compare
HMPREF1058_RS04445 +1.2 2.9 porin family protein compare
HMPREF1058_RS14225 +1.2 6.5 polyprenyl synthetase family protein compare
HMPREF1058_RS02065 +1.2 2.1 hypothetical protein compare
HMPREF1058_RS06555 +1.2 2.5 nucleotidyltransferase domain-containing protein compare
HMPREF1058_RS11490 +1.2 5.1 redox-regulated ATPase YchF compare
HMPREF1058_RS05880 +1.1 3.6 DUF5063 domain-containing protein compare
HMPREF1058_RS14220 +1.1 3.0 energy transducer TonB compare
HMPREF1058_RS15570 +1.1 9.2 hypothetical protein compare
HMPREF1058_RS10765 +1.1 5.9 ribonuclease III compare
HMPREF1058_RS14915 +1.1 4.0 N-acetyltransferase compare
HMPREF1058_RS09990 +1.1 8.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS04370 +1.0 5.6 agmatine deiminase family protein compare
HMPREF1058_RS14285 +1.0 3.7 DUF5056 domain-containing protein compare
HMPREF1058_RS12880 +1.0 6.9 thiamine-phosphate kinase compare
HMPREF1058_RS13910 +1.0 5.5 nucleoside deaminase compare
HMPREF1058_RS06165 +1.0 2.4 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS04090 +1.0 3.9 HU family DNA-binding protein compare
HMPREF1058_RS18235 +1.0 4.9 3'-5' exonuclease compare
HMPREF1058_RS02135 +1.0 8.1 phosphoenolpyruvate synthase compare
HMPREF1058_RS10285 +1.0 3.4 hypothetical protein compare
HMPREF1058_RS03185 +0.9 7.0 V-type ATP synthase subunit B compare
HMPREF1058_RS00710 +0.9 3.7 hypoxanthine phosphoribosyltransferase compare
HMPREF1058_RS12035 +0.9 3.1 phosphate butyryltransferase compare
HMPREF1058_RS03980 +0.9 1.3 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS06060 +0.9 6.5 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS02085 +0.9 6.1 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS12900 +0.9 3.5 nitroreductase family protein compare
HMPREF1058_RS15210 +0.9 4.1 aminotransferase class IV compare
HMPREF1058_RS15320 +0.9 4.4 hypothetical protein compare
HMPREF1058_RS03215 +0.8 6.7 AhpC/TSA family protein compare
HMPREF1058_RS10940 +0.8 6.5 U32 family peptidase compare
HMPREF1058_RS17650 +0.8 5.3 response regulator transcription factor compare
HMPREF1058_RS08535 +0.8 1.6 elongation factor P compare
HMPREF1058_RS20985 +0.8 2.0 tyrosine-type recombinase/integrase compare
HMPREF1058_RS06070 +0.8 2.3 ferritin compare
HMPREF1058_RS06250 +0.8 6.5 AMP-binding protein compare
HMPREF1058_RS01240 +0.8 5.3 DEAD/DEAH box helicase compare
HMPREF1058_RS05885 +0.8 4.5 3'-5' exonuclease domain-containing protein 2 compare
HMPREF1058_RS07675 +0.8 5.7 elongation factor G compare
HMPREF1058_RS06880 +0.8 6.1 amidophosphoribosyltransferase compare
HMPREF1058_RS15740 +0.8 2.0 hypothetical protein compare
HMPREF1058_RS03450 +0.8 2.3 hypothetical protein compare
HMPREF1058_RS03170 +0.8 4.3 hypothetical protein compare
HMPREF1058_RS16225 +0.8 2.2 DUF4250 domain-containing protein compare
HMPREF1058_RS03180 +0.8 5.6 V-type ATP synthase subunit A compare
HMPREF1058_RS13905 +0.8 3.8 hypothetical protein compare
HMPREF1058_RS03130 +0.8 2.6 DUF177 domain-containing protein compare
HMPREF1058_RS15915 +0.8 2.8 OmpH family outer membrane protein compare
HMPREF1058_RS03195 +0.8 5.0 V-type ATP synthase subunit I compare
HMPREF1058_RS05935 +0.7 4.4 bifunctional nuclease family protein compare
HMPREF1058_RS02990 +0.7 4.1 peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS15310 +0.7 4.2 Mfa1 family fimbria major subunit compare
HMPREF1058_RS16755 +0.7 2.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS02995 +0.7 3.0 peptidylprolyl isomerase compare
HMPREF1058_RS04270 +0.7 1.1 ferredoxin compare
HMPREF1058_RS14065 +0.7 4.6 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS16765 +0.7 4.2 PhoH family protein compare
HMPREF1058_RS06720 +0.7 2.8 glycosyltransferase compare
HMPREF1058_RS17700 +0.7 2.2 chaperone modulator CbpM compare
HMPREF1058_RS21635 +0.7 1.1 transcriptional regulator compare
HMPREF1058_RS21570 +0.7 1.6 hypothetical protein compare
HMPREF1058_RS17765 +0.7 3.1 Do family serine endopeptidase compare
HMPREF1058_RS15205 +0.7 3.3 aminodeoxychorismate synthase component I compare
HMPREF1058_RS03175 +0.7 2.2 DUF2764 domain-containing protein compare
HMPREF1058_RS03200 +0.7 2.2 V-type ATP synthase subunit K compare
HMPREF1058_RS06035 +0.6 3.3 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS09665 +0.6 3.1 class I SAM-dependent methyltransferase compare
HMPREF1058_RS12810 +0.6 3.5 VanZ family protein compare
HMPREF1058_RS17910 +0.6 2.9 PadR family transcriptional regulator compare
HMPREF1058_RS13605 +0.6 2.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1058_RS07410 +0.6 3.0 sialate O-acetylesterase compare
HMPREF1058_RS13730 +0.6 0.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS12040 +0.6 4.9 butyrate kinase compare
HMPREF1058_RS18505 +0.6 1.6 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS21400 +0.6 1.9 hypothetical protein compare
HMPREF1058_RS09240 +0.6 3.6 type I methionyl aminopeptidase compare
HMPREF1058_RS05650 +0.6 1.7 hypothetical protein compare
HMPREF1058_RS01605 +0.6 3.4 MBL fold metallo-hydrolase compare
HMPREF1058_RS14085 +0.6 2.9 5'/3'-nucleotidase SurE compare
HMPREF1058_RS01685 +0.6 2.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS20840 +0.6 2.7 NVEALA domain-containing protein compare
HMPREF1058_RS01820 +0.6 1.0 hypothetical protein compare
HMPREF1058_RS07465 +0.6 1.5 S26 family signal peptidase compare
HMPREF1058_RS11815 +0.6 3.9 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS06225 +0.6 1.8 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS04485 +0.6 2.4 hypothetical protein compare
HMPREF1058_RS06725 +0.6 3.7 glycosyl transferase compare
HMPREF1058_RS10055 +0.5 4.7 translational GTPase TypA compare
HMPREF1058_RS06730 +0.5 3.4 ABC transporter ATP-binding protein compare
HMPREF1058_RS00620 +0.5 4.0 GH32 C-terminal domain-containing protein compare
HMPREF1058_RS04730 +0.5 2.3 YbbR-like domain-containing protein compare
HMPREF1058_RS03090 +0.5 3.3 trigger factor compare
HMPREF1058_RS04985 +0.5 1.9 hypothetical protein compare
HMPREF1058_RS02000 +0.5 1.8 type II toxin-antitoxin system HicA family toxin compare
HMPREF1058_RS10985 +0.5 2.0 RNA methyltransferase compare
HMPREF1058_RS05675 +0.5 1.8 site-specific integrase compare
HMPREF1058_RS10905 +0.5 2.6 GtrA family protein compare
HMPREF1058_RS12785 +0.5 4.1 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS20790 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS15735 +0.5 1.0 hypothetical protein compare
HMPREF1058_RS10665 +0.5 2.2 hypothetical protein compare
HMPREF1058_RS13785 +0.5 3.9 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS05070 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS10240 +0.5 2.1 phage portal protein compare
HMPREF1058_RS15315 +0.5 1.3 FimB/Mfa2 family fimbrial subunit compare
HMPREF1058_RS04765 +0.5 2.1 hypothetical protein compare
HMPREF1058_RS10945 +0.5 3.8 tRNA dihydrouridine synthase DusB compare
HMPREF1058_RS06055 +0.5 2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS00205 +0.5 3.4 cation:proton antiporter compare
HMPREF1058_RS04970 +0.5 1.1 hypothetical protein compare
HMPREF1058_RS12470 +0.5 3.7 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1058_RS03910 +0.5 3.5 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS07075 +0.5 1.7 SPOR domain-containing protein compare
HMPREF1058_RS02115 +0.5 2.9 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS14110 +0.5 1.5 ribosome silencing factor compare
HMPREF1058_RS00465 +0.5 2.2 translation initiation factor compare
HMPREF1058_RS08305 +0.5 2.1 DJ-1/PfpI family protein compare
HMPREF1058_RS05620 +0.5 1.5 HipA N-terminal domain-containing protein compare
HMPREF1058_RS13780 +0.5 4.2 TonB-dependent receptor compare
HMPREF1058_RS15045 +0.5 3.9 family 20 glycosylhydrolase compare
HMPREF1058_RS15060 +0.5 3.0 outer membrane beta-barrel protein compare
HMPREF1058_RS12560 +0.5 3.3 redoxin domain-containing protein compare
HMPREF1058_RS20490 +0.5 1.0 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS0119645 +0.5 2.1 AAA family ATPase compare
HMPREF1058_RS03930 +0.5 2.0 ABC transporter permease compare
HMPREF1058_RS13965 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS21185 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS04410 +0.5 1.1 porin family protein compare
HMPREF1058_RS08000 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS16805 +0.5 2.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS14300 +0.4 3.0 rRNA cytosine-C5-methyltransferase compare
HMPREF1058_RS04395 +0.4 2.3 thioredoxin family protein compare
HMPREF1058_RS10010 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS0119685 +0.4 0.8 DUF4133 domain-containing protein compare
HMPREF1058_RS09890 +0.4 0.6 DUF3876 domain-containing protein compare
HMPREF1058_RS05520 +0.4 0.6 DUF4357 domain-containing protein compare
HMPREF1058_RS03765 +0.4 2.5 trimeric intracellular cation channel family protein compare
HMPREF1058_RS07945 +0.4 2.3 DUF4924 family protein compare
HMPREF1058_RS01710 +0.4 2.6 DUF4373 domain-containing protein compare
HMPREF1058_RS04275 +0.4 2.4 RNA-binding protein compare
HMPREF1058_RS07765 +0.4 2.5 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS15330 +0.4 2.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS05075 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS04125 +0.4 2.2 type I methionyl aminopeptidase compare
HMPREF1058_RS0119830 +0.4 0.5 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS12320 +0.4 2.7 glycoside hydrolase family 13 protein compare
HMPREF1058_RS14270 +0.4 2.5 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS0119900 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS01720 +0.4 2.0 lysine exporter LysO family protein compare
HMPREF1058_RS15745 +0.4 2.3 hypothetical protein compare
HMPREF1058_RS02775 +0.4 2.0 response regulator compare
HMPREF1058_RS01905 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS19185 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS03675 +0.4 2.5 hypothetical protein compare
HMPREF1058_RS17940 +0.4 2.7 alpha-amylase compare
HMPREF1058_RS14155 +0.4 2.6 DUF3244 domain-containing protein compare
HMPREF1058_RS05410 +0.4 1.9 RNA polymerase sigma factor compare
HMPREF1058_RS08615 +0.4 2.4 RluA family pseudouridine synthase compare
HMPREF1058_RS16110 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS18785 +0.4 2.2 MBL fold metallo-hydrolase compare
HMPREF1058_RS18835 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS05940 +0.4 1.6 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
HMPREF1058_RS05355 +0.4 1.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02770 +0.4 2.1 MATE family efflux transporter compare
HMPREF1058_RS21545 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS16415 +0.4 2.8 metallophosphoesterase compare
HMPREF1058_RS18920 +0.4 2.1 hypothetical protein compare
HMPREF1058_RS17285 +0.4 2.3 glycosyltransferase compare
HMPREF1058_RS02055 +0.4 2.2 SGNH/GDSL hydrolase family protein compare
HMPREF1058_RS11715 +0.4 1.6 glycerophosphoryl diester phosphodiesterase compare
HMPREF1058_RS05945 +0.4 2.5 DUF4836 family protein compare
HMPREF1058_RS08490 +0.4 3.2 DUF2156 domain-containing protein compare
HMPREF1058_RS18335 +0.4 1.8 sigma-70 family RNA polymerase sigma factor compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Arabinose in Phocaeicola vulgatus CL09T03C04

For carbon source D-Arabinose across organisms