Experiment set1IT080 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_12115 -4.2 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12090 -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20620 -4.0 -7.2 isopropylmalate isomerase compare
AO353_02070 -4.0 -6.7 prephenate dehydratase compare
AO353_20635 -3.6 -12.8 3-isopropylmalate dehydrogenase compare
AO353_00430 -3.6 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_20695 -3.4 -6.9 O-succinylhomoserine sulfhydrylase compare
AO353_12085 -3.4 -7.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20665 -3.4 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_22800 -3.3 -4.5 sulfite reductase compare
AO353_12520 -3.3 -12.2 glutamate synthase compare
AO353_10670 -3.3 -7.9 shikimate dehydrogenase compare
AO353_12515 -3.2 -20.0 glutamate synthase compare
AO353_13070 -3.1 -8.7 phosphoserine phosphatase compare
AO353_10710 -3.1 -5.9 tryptophan synthase subunit beta compare
AO353_07230 -3.1 -16.1 anthranilate synthase compare
AO353_12075 -3.1 -8.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08180 -3.1 -13.1 homoserine O-acetyltransferase compare
AO353_14505 -3.0 -12.0 ketol-acid reductoisomerase compare
AO353_14495 -3.0 -12.2 acetolactate synthase 3 catalytic subunit compare
AO353_07210 -3.0 -6.4 indole-3-glycerol-phosphate synthase compare
AO353_13165 -3.0 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_14500 -3.0 -7.4 acetolactate synthase 3 regulatory subunit compare
AO353_09000 -3.0 -6.0 argininosuccinate lyase compare
AO353_08345 -2.9 -9.3 dihydroxy-acid dehydratase compare
AO353_20625 -2.9 -4.8 3-isopropylmalate dehydratase compare
AO353_14595 -2.8 -10.1 carbonate dehydratase compare
AO353_05115 -2.8 -11.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_14400 -2.8 -5.3 Fis family transcriptional regulator compare
AO353_16835 -2.8 -3.3 LuxR family transcriptional regulator compare
AO353_10030 -2.8 -11.1 pyruvate carboxylase subunit A compare
AO353_25255 -2.7 -8.0 large subunit of pyruvate transporter (CstA) (from data) conserved
AO353_12070 -2.7 -9.6 imidazoleglycerol-phosphate dehydratase compare
AO353_12500 -2.7 -2.6 shikimate kinase compare
AO353_02075 -2.7 -11.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08780 -2.6 -8.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08185 -2.6 -10.4 methionine biosynthesis protein MetW compare
AO353_07220 -2.6 -7.3 anthranilate synthase compare
AO353_08475 -2.6 -9.3 phosphoserine phosphatase compare
AO353_12365 -2.6 -4.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_09240 -2.6 -4.6 acetylglutamate kinase compare
AO353_07155 -2.6 -8.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07515 -2.6 -3.0 transporter compare
AO353_10025 -2.6 -13.9 pyruvate carboxylase subunit B compare
AO353_10035 -2.6 -8.9 LysR family transcriptional regulator compare
AO353_04155 -2.4 -11.8 ornithine carbamoyltransferase compare
AO353_05110 -2.4 -10.7 histidinol dehydrogenase compare
AO353_11775 -2.4 -8.0 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_07215 -2.4 -7.3 anthranilate phosphoribosyltransferase compare
AO353_19060 -2.3 -5.3 CysB family transcriptional regulator compare
AO353_08015 -2.3 -7.8 5,10-methylenetetrahydrofolate reductase compare
AO353_06495 -2.3 -5.9 gamma-glutamyl phosphate reductase compare
AO353_12360 -2.3 -8.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_06040 -2.3 -4.3 exodeoxyribonuclease V subunit alpha compare
AO353_14115 -2.3 -6.5 gamma-glutamyl kinase compare
AO353_15925 -2.3 -10.7 2-isopropylmalate synthase compare
AO353_03020 -2.2 -8.8 arginine N-succinyltransferase compare
AO353_08685 -2.2 -8.7 N-acetylglutamate synthase compare
AO353_07525 -2.2 -12.5 biotin synthase compare
AO353_08510 -2.2 -5.5 3-phosphoglycerate dehydrogenase compare
AO353_04175 -2.1 -5.5 glycerol uptake facilitator GlpF compare
AO353_04105 -2.1 -9.0 argininosuccinate synthase compare
AO353_15490 -2.1 -3.1 hypothetical protein compare
AO353_00825 -2.1 -4.3 porin compare
AO353_04355 -2.1 -2.8 homoserine dehydrogenase compare
AO353_00515 -2.0 -4.1 hypothetical protein compare
AO353_08045 -2.0 -12.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07505 -2.0 -8.2 dethiobiotin synthetase compare
AO353_00310 -2.0 -9.1 transaldolase compare
AO353_13640 -2.0 -4.3 histidine kinase compare
AO353_14150 -1.9 -2.6 peptidylprolyl isomerase compare
AO353_06320 -1.9 -4.6 AsnC family transcriptional regulator compare
AO353_02040 -1.9 -3.4 integration host factor subunit beta compare
AO353_00490 -1.9 -3.6 PasA protein compare
AO353_07895 -1.9 -3.2 fructose-bisphosphate aldolase compare
AO353_14990 -1.9 -2.0 hypothetical protein compare
AO353_03015 -1.9 -4.9 arginine N-succinyltransferase compare
AO353_02685 -1.8 -3.5 phosphoribosylglycinamide formyltransferase compare
AO353_02720 -1.8 -5.8 cysteine synthase compare
AO353_08165 -1.8 -3.0 pyrroline-5-carboxylate reductase compare
AO353_02250 -1.8 -3.9 chorismate synthase compare
AO353_05080 -1.8 -9.2 sulfate adenylyltransferase compare
AO353_09560 -1.8 -2.4 type VI secretion protein compare
AO353_16940 -1.7 -6.0 deoxycytidine triphosphate deaminase compare
AO353_03670 -1.7 -4.6 ornithine acetyltransferase compare
AO353_02555 -1.7 -10.5 histidine kinase compare
AO353_09745 -1.7 -2.0 hypothetical protein compare
AO353_10705 -1.7 -3.5 tryptophan synthase subunit alpha compare
AO353_11750 -1.7 -2.7 ATPase compare
AO353_15250 -1.6 -3.4 cytochrome B compare
AO353_07520 -1.6 -10.0 8-amino-7-oxononanoate synthase compare
AO353_06045 -1.6 -6.8 exodeoxyribonuclease V subunit beta compare
AO353_25245 -1.6 -6.4 regulator conserved
AO353_20540 -1.6 -5.5 aromatic amino acid aminotransferase compare
AO353_03580 -1.5 -3.7 ATP-dependent DNA helicase RuvB compare
AO353_05105 -1.5 -8.1 histidinol-phosphate aminotransferase compare
AO353_14940 -1.5 -3.4 malate:quinone oxidoreductase compare
AO353_10455 -1.5 -2.0 tRNA modification GTPase MnmE compare
AO353_13140 -1.5 -5.2 tRNA dimethylallyltransferase compare
AO353_07315 -1.5 -2.2 rRNA methyltransferase compare
AO353_00610 -1.5 -2.2 cytochrome C oxidase Cbb3 compare
AO353_03520 -1.4 -3.0 hypothetical protein compare
AO353_12420 -1.4 -3.2 predicted FeS cluster maintenance protein (from data) compare
AO353_00650 -1.4 -2.8 cytochrome biogenesis protein compare
AO353_28055 -1.4 -2.9 hypothetical protein compare
AO353_05075 -1.4 -7.7 adenylylsulfate kinase compare
AO353_16805 -1.4 -5.1 recombinase RecA compare
AO353_09050 -1.4 -3.6 recombinase XerC compare
AO353_20590 -1.4 -2.4 hydrolase compare
AO353_05690 -1.4 -3.4 SsrA-binding protein compare
AO353_20565 -1.4 -1.4 tRNA-Ala compare
AO353_00620 -1.3 -2.3 cytochrome C oxidase Cbb3 compare
AO353_00495 -1.3 -1.9 DNA topoisomerase I compare
AO353_01780 -1.3 -7.8 heat-shock protein Hsp90 compare
AO353_23590 -1.3 -2.5 ArsR family transcriptional regulator compare
AO353_07510 -1.3 -6.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_08485 -1.3 -8.6 threonine dehydratase compare
AO353_06100 -1.3 -2.1 thymidylate synthase compare
AO353_07700 -1.3 -3.1 electron transfer flavoprotein subunit alpha compare
AO353_17160 -1.2 -2.2 aspartate-semialdehyde dehydrogenase compare
AO353_11770 -1.2 -2.0 molecular chaperone Hsp33 compare
AO353_14405 -1.2 -7.3 ATPase compare
AO353_15185 -1.2 -4.0 ATPase compare
AO353_19530 -1.2 -1.9 quinohemoprotein amine dehydrogenase compare
AO353_05625 -1.2 -1.6 transcription elongation factor GreA compare
AO353_07250 -1.2 -2.1 polyamine ABC transporter permease compare
AO353_00865 -1.2 -6.6 phosphoenolpyruvate synthase compare
AO353_02030 -1.2 -2.5 hypothetical protein compare
AO353_07355 -1.2 -4.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03615 -1.1 -2.9 cold-shock protein compare
AO353_03795 -1.1 -3.2 fumarate hydratase compare
AO353_00265 -1.1 -2.3 hypothetical protein compare
AO353_12240 -1.1 -3.8 histidine utilization repressor compare
AO353_01870 -1.1 -5.6 hypothetical protein conserved
AO353_08100 -1.1 -3.0 chemotaxis protein CheY compare
AO353_04565 -1.1 -4.4 nucleoid-associated protein compare
AO353_11165 -1.1 -6.0 hypothetical protein compare
AO353_03060 -1.1 -8.9 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) compare
AO353_02270 -1.1 -3.2 isochorismatase compare
AO353_13225 -1.1 -2.3 50S ribosomal protein L9 compare
AO353_03025 -1.0 -3.4 acetylornithine aminotransferase compare
AO353_02710 -1.0 -6.5 (p)ppGpp synthetase compare
AO353_19605 -1.0 -1.7 hypothetical protein compare
AO353_01865 -1.0 -7.1 cation/acetate symporter ActP compare
AO353_25250 -1.0 -4.3 histidine kinase conserved
AO353_06275 -1.0 -2.5 DNA polymerase III subunit epsilon compare
AO353_02550 -1.0 -2.9 TetR family transcriptional regulator compare
AO353_12135 -1.0 -3.1 rRNA methylase compare
AO353_22955 -1.0 -2.3 tRNA hydroxylase compare
AO353_00955 -1.0 -2.5 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_01685 -1.0 -1.7 hypothetical protein compare
AO353_14395 -0.9 -2.9 poly(A) polymerase compare
AO353_02970 -0.9 -1.8 carbon storage regulator compare
AO353_02300 -0.9 -1.9 MarR family transcriptional regulator compare
AO353_18505 -0.9 -1.2 translation initiation factor 2 compare
AO353_14930 -0.9 -2.4 GntR family transcriptional regulator compare
AO353_18540 -0.9 -2.3 pseudouridine synthase compare
AO353_13715 -0.9 -2.4 translation initiation factor Sui1 compare
AO353_07105 -0.9 -1.2 biotin--protein ligase compare
AO353_23220 -0.9 -1.9 hypothetical protein compare
AO353_19565 -0.9 -2.7 vanillate O-demethylase oxidoreductase VanB compare
AO353_28960 -0.9 -1.2 Fis family transcriptional regulator compare
AO353_06540 -0.9 -1.4 hypothetical protein compare
AO353_04965 -0.9 -2.3 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_14220 -0.9 -1.4 ribosomal large subunit pseudouridine synthase D compare
AO353_06050 -0.9 -4.0 exodeoxyribonuclease V subunit gamma compare
AO353_22700 -0.9 -1.8 LexA family transcriptional regulator compare
AO353_08885 -0.9 -6.5 polyphosphate kinase compare
AO353_03365 -0.9 -4.5 transcriptional regulator compare
AO353_11530 -0.8 -4.7 diguanylate cyclase compare
AO353_15555 -0.8 -2.9 fumarylacetoacetase compare
AO353_19625 -0.8 -2.3 isopentenyl-diphosphate delta-isomerase compare
AO353_01015 -0.8 -2.0 hypothetical protein compare
AO353_07575 -0.8 -3.7 DNA polymerase III subunit epsilon compare
AO353_03590 -0.8 -2.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_18325 -0.8 -1.6 hypothetical protein compare
AO353_21055 -0.8 -3.0 glycosyl hydrolase compare
AO353_16195 -0.8 -1.5 DNA mismatch repair protein MutT compare
AO353_09040 -0.8 -1.0 diaminopimelate epimerase compare
AO353_15785 -0.8 -4.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_24340 -0.8 -1.6 TetR family transcriptional regulator compare
AO353_21615 -0.8 -5.3 methionine synthase compare
AO353_01270 -0.8 -1.8 2-dehydro-3-deoxygalactonokinase compare
AO353_00605 -0.8 -3.4 cytochrome C oxidase Cbb3 compare
AO353_22600 -0.8 -1.4 hypothetical protein compare
AO353_13420 -0.8 -1.2 hypothetical protein compare
AO353_16810 -0.8 -2.4 recombinase RecX compare
AO353_00185 -0.8 -1.6 phage tail protein compare
AO353_29215 -0.8 -1.5 alpha/beta hydrolase compare
AO353_06585 -0.8 -3.7 hypothetical protein compare
AO353_02810 -0.8 -4.1 histidine kinase compare
AO353_15270 -0.8 -2.8 phospholipid-binding protein compare
AO353_00750 -0.8 -2.5 GntR family transcriptional regulator compare
AO353_22685 -0.8 -2.2 peroxidase compare
AO353_10445 -0.8 -1.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_04365 -0.8 -2.3 recombinase XerD compare
AO353_03585 -0.8 -1.7 ATP-dependent DNA helicase RuvA compare
AO353_06725 -0.8 -1.2 hypothetical protein compare
AO353_24130 -0.7 -1.9 hypothetical protein compare
AO353_11730 -0.7 -4.5 glutamate--cysteine ligase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium pyruvate across organisms