Experiment set1IT080 for Rahnella sp. WP5

Compare to:

L-Glutamine nitrogen source; ShewMM media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS15005 -6.5 -9.0 dihydroxy-acid dehydratase compare
EX31_RS13275 -6.4 -7.7 diaminopimelate decarboxylase compare
EX31_RS15020 -6.3 -11.4 ketol-acid reductoisomerase compare
EX31_RS04035 -6.0 -4.1 phosphoserine phosphatase compare
EX31_RS20980 -5.9 -4.1 glutamate 5-kinase compare
EX31_RS14180 -5.9 -10.6 argininosuccinate lyase compare
EX31_RS14190 -5.8 -11.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14500 -5.8 -9.7 orotate phosphoribosyltransferase compare
EX31_RS03940 -5.7 -7.8 homoserine kinase compare
EX31_RS14215 -5.7 -17.9 cystathionine gamma-synthase compare
EX31_RS03830 -5.6 -10.2 carbamoyl-phosphate synthase large subunit compare
EX31_RS12785 -5.6 -10.1 aspartate carbamoyltransferase compare
EX31_RS22695 -5.6 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS03945 -5.6 -18.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS03935 -5.6 -6.6 threonine synthase compare
EX31_RS02530 -5.5 -3.8 ABC transporter ATP-binding protein compare
EX31_RS13445 -5.4 -12.7 argininosuccinate synthase compare
EX31_RS16860 -5.4 -17.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03685 -5.4 -11.6 3-isopropylmalate dehydrogenase compare
EX31_RS14205 -5.4 -12.6 methylenetetrahydrofolate reductase compare
EX31_RS03695 -5.4 -6.2 3-isopropylmalate dehydratase small subunit compare
EX31_RS12510 -5.4 -17.3 FAD-dependent oxidoreductase compare
EX31_RS22625 -5.4 -3.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS21470 -5.4 -5.2 phosphoglycerate dehydrogenase compare
EX31_RS03690 -5.4 -8.2 3-isopropylmalate dehydratase large subunit compare
EX31_RS20975 -5.4 -3.7 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS16855 -5.4 -14.3 phosphoribosylamine--glycine ligase compare
EX31_RS12400 -5.2 -6.2 RNA polymerase factor sigma-54 compare
EX31_RS21895 -5.2 -13.5 phosphoribosylformylglycinamidine synthase compare
EX31_RS03250 -5.1 -9.2 RNA polymerase-binding protein DksA compare
EX31_RS23245 -5.1 -12.8 asparagine synthase B compare
EX31_RS11735 -5.1 -6.9 homoserine O-succinyltransferase compare
EX31_RS20495 -5.0 -6.9 outer membrane protein assembly factor BamB compare
EX31_RS22750 -5.0 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS18530 -5.0 -11.2 leucine-responsive transcriptional regulator Lrp compare
EX31_RS07895 -5.0 -10.6 phosphoadenylyl-sulfate reductase compare
EX31_RS13160 -4.9 -12.6 amino-acid N-acetyltransferase compare
EX31_RS14185 -4.9 -9.4 acetylglutamate kinase compare
EX31_RS12825 -4.8 -7.4 ornithine carbamoyltransferase compare
EX31_RS03835 -4.8 -8.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS11455 -4.7 -3.3 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS09975 -4.7 -4.6 tryptophan synthase subunit beta compare
EX31_RS19570 -4.7 -12.0 amidophosphoribosyltransferase compare
EX31_RS11470 -4.6 -3.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS09970 -4.6 -5.5 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS09965 -4.6 -4.4 anthranilate phosphoribosyltransferase compare
EX31_RS11440 -4.5 -5.4 histidinol dehydrogenase compare
EX31_RS20175 -4.5 -9.2 cysteine synthase A compare
EX31_RS22620 -4.5 -4.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS20450 -4.4 -4.3 IMP dehydrogenase compare
EX31_RS09955 -4.4 -3.1 anthranilate synthase component 1 compare
EX31_RS09980 -4.4 -5.2 tryptophan synthase subunit alpha compare
EX31_RS09890 -4.4 -10.6 HTH-type transcriptional regulator CysB compare
EX31_RS11465 -4.4 -5.2 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS09855 -4.4 -4.2 orotidine-5'-phosphate decarboxylase compare
EX31_RS02515 -4.3 -4.2 PAS domain-containing protein compare
EX31_RS09960 -4.3 -3.0 glutamine amidotransferase compare
EX31_RS11450 -4.3 -3.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS02690 -4.3 -7.1 pyrroline-5-carboxylate reductase compare
EX31_RS12515 -4.2 -27.6 glutamate synthase large subunit compare
EX31_RS24385 -4.2 -2.9 dihydroorotase compare
EX31_RS08745 -4.2 -2.9 50S ribosomal protein L9 compare
EX31_RS07955 -4.2 -21.3 GTP diphosphokinase compare
EX31_RS07585 -4.1 -10.3 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS11445 -4.1 -6.3 histidinol-phosphate transaminase compare
EX31_RS02520 -4.0 -5.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS25365 -3.9 -2.7 50S ribosomal protein L31 compare
EX31_RS03680 -3.9 -14.9 2-isopropylmalate synthase compare
EX31_RS18095 -3.9 -5.3 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS07900 -3.8 -17.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS22245 -3.7 -3.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS07905 -3.7 -19.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS05785 -3.6 -5.5 superoxide dismutase [Mn] compare
EX31_RS07870 -3.5 -10.6 adenylyl-sulfate kinase compare
EX31_RS18255 -3.5 -2.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS23440 -3.4 -2.3 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS07875 -3.4 -19.8 sulfate adenylyltransferase subunit CysN compare
EX31_RS11460 -3.4 -3.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS22250 -3.3 -5.9 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS18540 -3.3 -3.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS08535 -3.2 -4.3 30S ribosome-binding factor RbfA compare
EX31_RS14310 -3.1 -5.2 6-phosphofructokinase compare
EX31_RS14340 -3.1 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS06055 -3.1 -4.2 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS07785 -3.1 -2.1 carbon storage regulator CsrA compare
EX31_RS03775 -3.1 -4.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS07560 -3.1 -20.7 ATP-dependent chaperone ClpB compare
EX31_RS25105 -3.0 -2.1 DUF2474 domain-containing protein compare
EX31_RS08720 -3.0 -15.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS14335 -3.0 -2.1 serine O-acetyltransferase compare
EX31_RS07880 -3.0 -17.7 sulfate adenylyltransferase subunit CysD compare
EX31_RS04105 -2.9 -2.8 helix-turn-helix domain-containing protein compare
EX31_RS09290 -2.8 -2.7 hypothetical protein compare
EX31_RS15010 -2.8 -10.1 threonine ammonia-lyase, biosynthetic compare
EX31_RS23485 -2.8 -2.6 colicin uptake protein TolR compare
EX31_RS07590 -2.7 -3.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS20735 -2.7 -5.5 exodeoxyribonuclease V subunit beta compare
EX31_RS06065 -2.7 -10.0 phosphate ABC transporter permease PstC compare
EX31_RS11435 -2.7 -6.6 ATP phosphoribosyltransferase compare
EX31_RS06070 -2.6 -10.1 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS18525 -2.6 -4.2 DNA translocase FtsK compare
EX31_RS15870 -2.5 -5.1 glutamate--ammonia ligase compare
EX31_RS12875 -2.5 -2.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS21850 -2.5 -2.9 pyridoxine 5'-phosphate synthase compare
EX31_RS11525 -2.5 -2.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS15910 -2.4 -9.8 thiol:disulfide interchange protein DsbA compare
EX31_RS26040 -2.4 -2.3 hypothetical protein compare
EX31_RS23495 -2.4 -8.0 Tol-Pal system protein TolB compare
EX31_RS23500 -2.4 -5.0 peptidoglycan-associated lipoprotein Pal compare
EX31_RS00625 -2.4 -2.2 YgdI/YgdR family lipoprotein compare
EX31_RS07595 -2.4 -8.4 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS19655 -2.3 -5.7 beta-ketoacyl-ACP synthase I compare
EX31_RS06150 -2.3 -14.6 transcriptional regulator AsnC compare
EX31_RS04630 -2.3 -12.5 aspartate aminotransferase family protein compare
EX31_RS19610 -2.2 -7.8 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS15155 -2.2 -3.3 diaminopimelate epimerase compare
EX31_RS06060 -2.2 -5.6 phosphate ABC transporter permease PstA compare
EX31_RS25370 -2.1 -10.7 HTH-type transcriptional regulator MetR compare
EX31_RS06000 -2.1 -5.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS18450 -2.1 -2.4 hypothetical protein compare
EX31_RS10115 -2.1 -9.0 formyltetrahydrofolate deformylase compare
EX31_RS23490 -2.0 -3.5 cell envelope integrity protein TolA compare
EX31_RS14325 -2.0 -11.1 envelope stress sensor histidine kinase CpxA compare
EX31_RS25110 -2.0 -3.0 DUF2474 domain-containing protein compare
EX31_RS19485 -2.0 -6.4 phosphate acetyltransferase compare
EX31_RS21400 -1.9 -5.3 transketolase compare
EX31_RS01545 -1.9 -2.0 hypothetical protein compare
EX31_RS03480 -1.9 -3.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS08130 -1.9 -2.2 accessory factor UbiK family protein compare
EX31_RS20185 -1.8 -6.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS04325 -1.8 -1.3 hypothetical protein compare
EX31_RS22740 -1.8 -8.4 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS14200 -1.8 -10.0 phosphoenolpyruvate carboxylase compare
EX31_RS20190 -1.8 -2.0 PTS glucose transporter subunit IIA compare
EX31_RS23480 -1.8 -3.4 Tol-Pal system protein TolQ compare
EX31_RS04725 -1.8 -4.0 shikimate kinase AroK compare
EX31_RS11815 -1.7 -8.8 glucose-6-phosphate isomerase compare
EX31_RS04390 -1.7 -2.5 DNA polymerase III subunit chi compare
EX31_RS15880 -1.7 -7.2 nitrogen regulation protein NR(I) compare
EX31_RS19205 -1.7 -3.0 50S ribosomal protein L25 compare
EX31_RS25340 -1.7 -4.2 hypothetical protein compare
EX31_RS11270 -1.7 -7.6 flagellar hook-associated protein FlgK compare
EX31_RS09545 -1.6 -3.8 flagellar motor switch protein FliG compare
EX31_RS01970 -1.6 -1.5 hypothetical protein compare
EX31_RS20530 -1.6 -6.3 nucleoside-diphosphate kinase compare
EX31_RS10030 -1.6 -2.0 YciY family protein compare
EX31_RS22120 -1.6 -5.8 transcriptional regulator NrdR compare
EX31_RS22430 -1.6 -2.0 hemolysin expression modulator Hha compare
EX31_RS21190 -1.5 -3.3 ribonuclease HI compare
EX31_RS18010 -1.5 -2.4 methylglyoxal synthase compare
EX31_RS10580 -1.5 -3.0 septum site-determining protein MinC compare
EX31_RS09895 -1.5 -2.8 type I DNA topoisomerase compare
EX31_RS10515 -1.5 -3.4 disulfide bond formation protein DsbB compare
EX31_RS18785 -1.5 -3.8 DUF2384 domain-containing protein compare
EX31_RS10535 -1.5 -1.5 GtrA family protein compare
EX31_RS15095 -1.4 -2.7 O-antigen assembly polymerase compare
EX31_RS06140 -1.4 -8.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS25140 -1.4 -1.2 AlpA family transcriptional regulator compare
EX31_RS04710 -1.4 -3.6 adenine-specific DNA-methyltransferase compare
EX31_RS19420 -1.4 -2.6 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS15015 -1.4 -3.5 HTH-type transcriptional activator IlvY compare
EX31_RS10020 -1.4 -1.8 YciI family protein compare
EX31_RS11425 -1.4 -3.4 flagellar transcriptional regulator FlhD compare
EX31_RS09465 -1.4 -3.8 flagellar export chaperone FliS compare
EX31_RS23755 -1.4 -1.5 molybdopterin synthase sulfur carrier subunit compare
EX31_RS21020 -1.4 -2.0 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS00315 -1.3 -2.9 heme-binding protein compare
EX31_RS21805 -1.3 -2.3 anti-sigma-E factor RseA compare
EX31_RS24410 -1.3 -5.4 23S rRNA accumulation protein YceD compare
EX31_RS09585 -1.3 -1.8 flagellar biosynthetic protein FliO compare
EX31_RS18470 -1.3 -4.3 pyruvate formate lyase 1-activating protein compare
EX31_RS25415 -1.3 -0.9 helix-turn-helix domain-containing protein compare
EX31_RS23320 -1.3 -3.3 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS24065 -1.3 -1.3 pyrimidine utilization flavin reductase protein F compare
EX31_RS23315 -1.3 -4.4 replication initiation negative regulator SeqA compare
EX31_RS04925 -1.3 -2.4 Fe-S biogenesis protein NfuA compare
EX31_RS13280 -1.3 -7.4 LysR family transcriptional regulator compare
EX31_RS11280 -1.2 -2.3 flagellar basal body P-ring protein FlgI compare
EX31_RS19600 -1.2 -5.3 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS09555 -1.2 -4.6 flagellum-specific ATP synthase FliI compare
EX31_RS01595 -1.2 -1.1 phage minor tail protein G compare
EX31_RS11285 -1.2 -3.0 flagellar basal body L-ring protein FlgH compare
EX31_RS11330 -1.2 -4.8 flagellar synthesis chaperone protein FlgN compare
EX31_RS14990 -1.2 -7.6 acetolactate synthase 2 catalytic subunit compare
EX31_RS09450 -1.2 -6.9 RNA polymerase sigma factor FliA compare
EX31_RS10260 -1.2 -2.0 hypothetical protein compare
EX31_RS11275 -1.2 -3.7 flagellar assembly peptidoglycan hydrolase FlgJ compare
EX31_RS08650 -1.2 -2.4 transcriptional regulator ArgR compare
EX31_RS15865 -1.2 -8.6 ribosome-dependent GTPase TypA compare
EX31_RS25375 -1.2 -3.0 ilv operon leader peptide compare
EX31_RS13480 -1.2 -3.8 site-specific tyrosine recombinase XerD compare
EX31_RS19375 -1.2 -3.2 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS05145 -1.2 -5.5 inorganic phosphate transporter PitA compare
EX31_RS24300 -1.2 -1.7 DUF2971 domain-containing protein compare
EX31_RS09560 -1.2 -2.1 flagella biosynthesis chaperone FliJ compare
EX31_RS02525 -1.1 -5.0 ABC transporter permease compare
EX31_RS02385 -1.1 -0.9 hypothetical protein compare
EX31_RS00450 -1.1 -1.8 methionine-R-sulfoxide reductase compare
EX31_RS11690 -1.1 -1.9 dihydroneopterin triphosphate diphosphatase compare
EX31_RS08140 -1.1 -1.9 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Glutamine in Rahnella sp. WP5

For nitrogen source L-Glutamine across organisms