Experiment set1IT079 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_00430 -5.0 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_02070 -4.7 -6.4 prephenate dehydratase compare
AO353_07515 -4.7 -3.2 transporter compare
AO353_12085 -4.5 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20635 -4.4 -14.4 3-isopropylmalate dehydrogenase compare
AO353_05715 -4.4 -12.4 lactate utilization protein B/C conserved
AO353_13070 -4.3 -9.6 phosphoserine phosphatase compare
AO353_07220 -4.2 -9.0 anthranilate synthase compare
AO353_12070 -4.2 -9.8 imidazoleglycerol-phosphate dehydratase compare
AO353_20665 -4.2 -12.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_02075 -4.1 -12.8 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08185 -4.1 -12.2 methionine biosynthesis protein MetW compare
AO353_05705 -4.1 -10.4 oxidoreductase conserved
AO353_12520 -4.1 -13.7 glutamate synthase compare
AO353_05115 -4.1 -12.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12515 -4.0 -23.9 glutamate synthase compare
AO353_10670 -4.0 -9.3 shikimate dehydrogenase compare
AO353_20625 -4.0 -5.5 3-isopropylmalate dehydratase compare
AO353_20540 -4.0 -9.6 aromatic amino acid aminotransferase compare
AO353_07230 -3.9 -18.9 anthranilate synthase compare
AO353_13165 -3.9 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_14505 -3.9 -14.6 ketol-acid reductoisomerase compare
AO353_08345 -3.9 -10.8 dihydroxy-acid dehydratase compare
AO353_10025 -3.8 -17.6 pyruvate carboxylase subunit B compare
AO353_08685 -3.8 -10.5 N-acetylglutamate synthase compare
AO353_14500 -3.8 -7.7 acetolactate synthase 3 regulatory subunit compare
AO353_05110 -3.8 -13.4 histidinol dehydrogenase compare
AO353_14495 -3.8 -13.5 acetolactate synthase 3 catalytic subunit compare
AO353_14400 -3.8 -5.7 Fis family transcriptional regulator compare
AO353_07525 -3.7 -17.6 biotin synthase compare
AO353_20695 -3.7 -7.9 O-succinylhomoserine sulfhydrylase compare
AO353_07155 -3.7 -9.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_20620 -3.7 -7.9 isopropylmalate isomerase compare
AO353_12500 -3.6 -2.5 shikimate kinase compare
AO353_05710 -3.6 -16.6 (Fe-S)-binding protein conserved
AO353_08180 -3.6 -15.4 homoserine O-acetyltransferase compare
AO353_09240 -3.6 -4.9 acetylglutamate kinase compare
AO353_12090 -3.5 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07215 -3.5 -9.7 anthranilate phosphoribosyltransferase compare
AO353_05700 -3.5 -13.4 L-lactate permease conserved
AO353_10710 -3.5 -6.6 tryptophan synthase subunit beta compare
AO353_08475 -3.4 -11.3 phosphoserine phosphatase compare
AO353_19060 -3.4 -6.5 CysB family transcriptional regulator compare
AO353_10035 -3.3 -10.8 LysR family transcriptional regulator compare
AO353_04105 -3.3 -11.4 argininosuccinate synthase compare
AO353_10030 -3.2 -13.4 pyruvate carboxylase subunit A compare
AO353_12360 -3.1 -10.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_16940 -3.1 -8.7 deoxycytidine triphosphate deaminase compare
AO353_02685 -3.1 -5.5 phosphoribosylglycinamide formyltransferase compare
AO353_07520 -3.1 -15.9 8-amino-7-oxononanoate synthase compare
AO353_14595 -3.1 -11.9 carbonate dehydratase compare
AO353_04155 -3.1 -14.7 ornithine carbamoyltransferase compare
AO353_12075 -3.1 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07505 -3.0 -11.4 dethiobiotin synthetase compare
AO353_14115 -3.0 -8.2 gamma-glutamyl kinase compare
AO353_07210 -3.0 -5.9 indole-3-glycerol-phosphate synthase compare
AO353_12115 -3.0 -3.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08015 -3.0 -9.3 5,10-methylenetetrahydrofolate reductase compare
AO353_10455 -3.0 -2.9 tRNA modification GTPase MnmE compare
AO353_08045 -2.9 -17.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_12365 -2.9 -4.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_11775 -2.9 -9.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_08510 -2.8 -7.3 3-phosphoglycerate dehydrogenase compare
AO353_15925 -2.8 -11.2 2-isopropylmalate synthase compare
AO353_09000 -2.8 -7.9 argininosuccinate lyase compare
AO353_08780 -2.7 -9.2 5-formyltetrahydrofolate cyclo-ligase compare
AO353_07510 -2.7 -11.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_03615 -2.7 -5.3 cold-shock protein compare
AO353_22800 -2.6 -4.0 sulfite reductase compare
AO353_14370 -2.6 -8.2 glucose-6-phosphate isomerase compare
AO353_03020 -2.5 -8.2 arginine N-succinyltransferase compare
AO353_03580 -2.5 -5.1 ATP-dependent DNA helicase RuvB compare
AO353_07645 -2.3 -2.6 sarcosine oxidase subunit gamma compare
AO353_06040 -2.3 -5.0 exodeoxyribonuclease V subunit alpha compare
AO353_08165 -2.2 -3.9 pyrroline-5-carboxylate reductase compare
AO353_06495 -2.2 -5.3 gamma-glutamyl phosphate reductase compare
AO353_00310 -2.2 -10.6 transaldolase compare
AO353_18540 -2.2 -4.5 pseudouridine synthase compare
AO353_00825 -2.2 -5.5 porin compare
AO353_05105 -2.1 -11.3 histidinol-phosphate aminotransferase compare
AO353_03015 -2.1 -5.3 arginine N-succinyltransferase compare
AO353_10705 -2.1 -4.7 tryptophan synthase subunit alpha compare
AO353_10945 -2.0 -4.1 cytochrome C compare
AO353_13140 -2.0 -6.3 tRNA dimethylallyltransferase compare
AO353_07355 -1.9 -7.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_07075 -1.9 -5.9 elongation factor Tu compare
AO353_05075 -1.9 -10.3 adenylylsulfate kinase compare
AO353_11165 -1.8 -9.2 hypothetical protein compare
AO353_02250 -1.8 -3.8 chorismate synthase compare
AO353_02710 -1.8 -11.8 (p)ppGpp synthetase compare
AO353_09285 -1.8 -9.3 reactive intermediate/imine deaminase compare
AO353_11770 -1.8 -2.6 molecular chaperone Hsp33 compare
AO353_04175 -1.7 -5.7 glycerol uptake facilitator GlpF compare
AO353_02720 -1.7 -6.4 cysteine synthase compare
AO353_02975 -1.7 -2.7 aspartate kinase compare
AO353_04355 -1.7 -2.5 homoserine dehydrogenase compare
AO353_08885 -1.7 -12.9 polyphosphate kinase compare
AO353_06045 -1.7 -7.9 exodeoxyribonuclease V subunit beta compare
AO353_02465 -1.7 -2.9 hypothetical protein compare
AO353_05080 -1.7 -10.2 sulfate adenylyltransferase compare
AO353_08880 -1.7 -3.1 exopolyphosphatase compare
AO353_14220 -1.7 -2.5 ribosomal large subunit pseudouridine synthase D compare
AO353_20175 -1.6 -4.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_01410 -1.6 -4.0 ribonuclease E compare
AO353_06050 -1.6 -6.9 exodeoxyribonuclease V subunit gamma compare
AO353_09890 -1.5 -5.2 phosphate ABC transporter ATP-binding protein compare
AO353_27650 -1.5 -4.2 cell division protein FtsK compare
AO353_14405 -1.4 -7.9 ATPase compare
AO353_00490 -1.4 -3.4 PasA protein compare
AO353_00865 -1.3 -8.3 phosphoenolpyruvate synthase compare
AO353_13640 -1.3 -4.3 histidine kinase compare
AO353_06320 -1.3 -4.3 AsnC family transcriptional regulator compare
AO353_14775 -1.3 -5.4 hypothetical protein compare
AO353_08485 -1.3 -8.5 threonine dehydratase compare
AO353_00620 -1.3 -2.8 cytochrome C oxidase Cbb3 compare
AO353_00750 -1.3 -4.1 GntR family transcriptional regulator compare
AO353_00610 -1.3 -2.6 cytochrome C oxidase Cbb3 compare
AO353_12420 -1.3 -3.5 predicted FeS cluster maintenance protein (from data) compare
AO353_10985 -1.2 -2.3 hypothetical protein compare
AO353_22600 -1.2 -2.5 hypothetical protein compare
AO353_17850 -1.2 -3.1 SAM-dependent methyltransferase compare
AO353_10435 -1.2 -7.2 chromosome partitioning protein compare
AO353_05420 -1.2 -2.0 peptide chain release factor 3 compare
AO353_04565 -1.2 -5.2 nucleoid-associated protein compare
AO353_15725 -1.2 -3.3 hypothetical protein compare
AO353_23495 -1.2 -2.5 SAM-dependent methyltransferase compare
AO353_13160 -1.1 -2.3 membrane protease HflC compare
AO353_16805 -1.1 -5.2 recombinase RecA compare
AO353_11530 -1.1 -6.7 diguanylate cyclase compare
AO353_05690 -1.1 -3.3 SsrA-binding protein compare
AO353_13605 -1.1 -6.9 oxidoreductase compare
AO353_15250 -1.1 -3.2 cytochrome B compare
AO353_02810 -1.1 -5.7 histidine kinase compare
AO353_14395 -1.1 -3.8 poly(A) polymerase compare
AO353_10725 -1.1 -1.8 dodecin flavoprotein compare
AO353_12105 -1.1 -4.6 peptidase S41 compare
AO353_09050 -1.1 -3.4 recombinase XerC compare
AO353_03025 -1.1 -3.8 acetylornithine aminotransferase compare
AO353_12145 -1.1 -3.7 nitrogen regulation protein NR(I) compare
AO353_16845 -1.1 -5.5 LysR family transcriptional regulator compare
AO353_09265 -1.0 -2.4 hypothetical protein compare
AO353_15185 -1.0 -4.0 ATPase compare
AO353_13245 -1.0 -5.2 hypothetical protein compare
AO353_10430 -1.0 -3.1 chromosome partitioning protein ParB compare
AO353_16210 -1.0 -6.9 XRE family transcriptional regulator compare
AO353_03590 -1.0 -2.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_14935 -1.0 -3.2 aminopeptidase compare
AO353_05280 -1.0 -2.2 4-carboxymuconolactone decarboxylase compare
AO353_05625 -1.0 -1.4 transcription elongation factor GreA compare
AO353_08980 -1.0 -2.9 heme biosynthesis operon protein HemX compare
AO353_03520 -1.0 -2.9 hypothetical protein compare
AO353_00955 -1.0 -1.9 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_11750 -1.0 -2.1 ATPase compare
AO353_14150 -1.0 -1.7 peptidylprolyl isomerase compare
AO353_12345 -0.9 -1.7 twin-arginine protein translocation system subunit TatC compare
AO353_00605 -0.9 -4.0 cytochrome C oxidase Cbb3 compare
AO353_19360 -0.9 -2.4 peroxiredoxin compare
AO353_08130 -0.9 -2.2 uracil phosphoribosyltransferase compare
AO353_02300 -0.9 -2.2 MarR family transcriptional regulator compare
AO353_03630 -0.9 -6.8 porin compare
AO353_02970 -0.9 -2.6 carbon storage regulator compare
AO353_16810 -0.9 -3.0 recombinase RecX compare
AO353_04220 -0.9 -4.2 chemotaxis protein CheY compare
AO353_16040 -0.8 -1.8 hypothetical protein compare
AO353_20095 -0.8 -3.5 histidine kinase compare
AO353_01615 -0.8 -3.3 pilus assembly protein PilA compare
AO353_23590 -0.8 -2.1 ArsR family transcriptional regulator compare
AO353_03710 -0.8 -2.4 formyltetrahydrofolate deformylase compare
AO353_11850 -0.8 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14420 -0.8 -2.9 molecular chaperone DnaK compare
AO353_13600 -0.8 -2.9 precorrin-6Y C5,15-methyltransferase compare
AO353_06400 -0.8 -3.5 hypothetical protein compare
AO353_09860 -0.8 -5.9 histidine kinase compare
AO353_10825 -0.8 -6.2 hypothetical protein compare
AO353_12460 -0.8 -4.5 malate dehydrogenase compare
AO353_02140 -0.8 -5.0 BolA family transcriptional regulator compare
AO353_02145 -0.8 -3.8 hypothetical protein compare
AO353_15975 -0.8 -3.4 GntR family transcriptional regulator compare
AO353_23410 -0.8 -1.3 hypothetical protein compare
AO353_16600 -0.8 -5.1 stationary phase survival protein SurE compare
AO353_09320 -0.8 -5.1 ATP-dependent DNA helicase RecG compare
AO353_19295 -0.8 -1.2 hypothetical protein compare
AO353_01375 -0.8 -4.4 phosphate acyltransferase compare
AO353_16605 -0.8 -5.8 protein-L-isoaspartate O-methyltransferase compare
AO353_08265 -0.8 -3.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_08100 -0.8 -2.3 chemotaxis protein CheY compare
AO353_20630 -0.8 -4.0 SAM-dependent methyltransferase compare
AO353_24605 -0.8 -2.1 hypothetical protein compare
AO353_13225 -0.7 -2.1 50S ribosomal protein L9 compare
AO353_12650 -0.7 -1.2 hypothetical protein compare
AO353_12580 -0.7 -1.5 type II secretory protein PulK compare
AO353_24745 -0.7 -1.5 hypothetical protein compare
AO353_02940 -0.7 -1.5 DNA-binding protein compare
AO353_02195 -0.7 -2.9 spermidine synthase compare
AO353_05125 -0.7 -3.2 BolA family transcriptional regulator compare
AO353_11310 -0.7 -2.5 aspartyl beta-hydroxylase compare
AO353_01780 -0.7 -5.1 heat-shock protein Hsp90 compare
AO353_09905 -0.7 -4.7 phosphate-binding protein compare
AO353_05340 -0.7 -2.3 histidine kinase compare
AO353_25340 -0.7 -3.0 triphosphoribosyl-dephospho-CoA synthase MdcB compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium D,L-Lactate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium D,L-Lactate across organisms