Experiment set1IT078 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20635 -4.7 -13.0 3-isopropylmalate dehydrogenase compare
AO353_07220 -4.7 -7.8 anthranilate synthase compare
AO353_13070 -4.7 -7.8 phosphoserine phosphatase compare
AO353_05115 -4.5 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_02070 -4.5 -8.1 prephenate dehydratase compare
AO353_12090 -4.5 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20625 -4.5 -4.4 3-isopropylmalate dehydratase compare
AO353_20695 -4.5 -7.4 O-succinylhomoserine sulfhydrylase compare
AO353_00430 -4.4 -5.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07230 -4.3 -17.5 anthranilate synthase compare
AO353_05715 -4.3 -12.4 lactate utilization protein B/C conserved
AO353_14505 -4.2 -13.2 ketol-acid reductoisomerase compare
AO353_12520 -4.2 -13.1 glutamate synthase compare
AO353_05110 -4.1 -11.9 histidinol dehydrogenase compare
AO353_12085 -4.1 -8.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_10670 -4.1 -9.1 shikimate dehydrogenase compare
AO353_13165 -4.0 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
AO353_05705 -4.0 -10.6 oxidoreductase conserved
AO353_08180 -4.0 -14.9 homoserine O-acetyltransferase compare
AO353_12515 -3.9 -23.5 glutamate synthase compare
AO353_02075 -3.9 -12.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08345 -3.9 -11.1 dihydroxy-acid dehydratase compare
AO353_08475 -3.8 -11.5 phosphoserine phosphatase compare
AO353_12070 -3.8 -11.0 imidazoleglycerol-phosphate dehydratase compare
AO353_08185 -3.8 -12.4 methionine biosynthesis protein MetW compare
AO353_20665 -3.7 -11.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_02685 -3.7 -5.0 phosphoribosylglycinamide formyltransferase compare
AO353_07215 -3.7 -9.4 anthranilate phosphoribosyltransferase compare
AO353_12075 -3.6 -10.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12500 -3.6 -2.5 shikimate kinase compare
AO353_10030 -3.6 -12.7 pyruvate carboxylase subunit A compare
AO353_10710 -3.6 -6.8 tryptophan synthase subunit beta compare
AO353_08685 -3.6 -11.2 N-acetylglutamate synthase compare
AO353_00310 -3.6 -13.0 transaldolase compare
AO353_07515 -3.6 -3.4 transporter compare
AO353_07155 -3.6 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_22800 -3.5 -4.8 sulfite reductase compare
AO353_09240 -3.5 -4.8 acetylglutamate kinase compare
AO353_10035 -3.5 -11.0 LysR family transcriptional regulator compare
AO353_05710 -3.5 -15.9 (Fe-S)-binding protein conserved
AO353_10025 -3.5 -17.5 pyruvate carboxylase subunit B compare
AO353_12360 -3.5 -10.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_14495 -3.5 -14.1 acetolactate synthase 3 catalytic subunit compare
AO353_20620 -3.4 -7.6 isopropylmalate isomerase compare
AO353_05700 -3.4 -13.1 L-lactate permease conserved
AO353_12365 -3.3 -5.4 phosphoribosyl-AMP cyclohydrolase compare
AO353_04105 -3.2 -11.3 argininosuccinate synthase compare
AO353_08015 -3.2 -8.7 5,10-methylenetetrahydrofolate reductase compare
AO353_12115 -3.2 -4.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_14400 -3.2 -5.6 Fis family transcriptional regulator compare
AO353_08510 -3.1 -7.0 3-phosphoglycerate dehydrogenase compare
AO353_15925 -3.1 -12.9 2-isopropylmalate synthase compare
AO353_04155 -3.1 -14.7 ornithine carbamoyltransferase compare
AO353_07210 -3.1 -6.9 indole-3-glycerol-phosphate synthase compare
AO353_07525 -3.1 -16.6 biotin synthase compare
AO353_14370 -3.1 -8.7 glucose-6-phosphate isomerase compare
AO353_06495 -3.0 -7.0 gamma-glutamyl phosphate reductase compare
AO353_20540 -3.0 -9.9 aromatic amino acid aminotransferase compare
AO353_08165 -2.9 -3.5 pyrroline-5-carboxylate reductase compare
AO353_14500 -2.9 -8.8 acetolactate synthase 3 regulatory subunit compare
AO353_08045 -2.8 -16.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_21625 -2.7 -3.6 Fe/S biogenesis protein NfuA compare
AO353_19060 -2.7 -6.6 CysB family transcriptional regulator compare
AO353_07520 -2.7 -13.4 8-amino-7-oxononanoate synthase compare
AO353_09000 -2.7 -8.0 argininosuccinate lyase compare
AO353_16940 -2.6 -8.2 deoxycytidine triphosphate deaminase compare
AO353_14595 -2.6 -11.1 carbonate dehydratase compare
AO353_07505 -2.5 -10.6 dethiobiotin synthetase compare
AO353_14115 -2.5 -7.6 gamma-glutamyl kinase compare
AO353_03615 -2.5 -4.6 cold-shock protein compare
AO353_08780 -2.5 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
AO353_02710 -2.3 -13.3 (p)ppGpp synthetase compare
AO353_11775 -2.3 -8.9 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_03020 -2.3 -7.6 arginine N-succinyltransferase compare
AO353_07510 -2.2 -10.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_05690 -2.1 -4.6 SsrA-binding protein compare
AO353_05105 -2.0 -10.7 histidinol-phosphate aminotransferase compare
AO353_00825 -2.0 -5.2 porin compare
AO353_02250 -2.0 -3.0 chorismate synthase compare
AO353_04175 -2.0 -5.9 glycerol uptake facilitator GlpF compare
AO353_13225 -1.9 -4.4 50S ribosomal protein L9 compare
AO353_04220 -1.9 -7.2 chemotaxis protein CheY compare
AO353_03580 -1.9 -4.4 ATP-dependent DNA helicase RuvB compare
AO353_02720 -1.8 -6.0 cysteine synthase compare
AO353_11770 -1.8 -2.6 molecular chaperone Hsp33 compare
AO353_10705 -1.7 -3.7 tryptophan synthase subunit alpha compare
AO353_07355 -1.7 -6.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_09285 -1.7 -9.7 reactive intermediate/imine deaminase compare
AO353_03590 -1.7 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_04355 -1.7 -2.4 homoserine dehydrogenase compare
AO353_13140 -1.6 -6.4 tRNA dimethylallyltransferase compare
AO353_09040 -1.6 -2.0 diaminopimelate epimerase compare
AO353_00620 -1.6 -3.2 cytochrome C oxidase Cbb3 compare
AO353_06320 -1.6 -4.2 AsnC family transcriptional regulator compare
AO353_05075 -1.5 -9.4 adenylylsulfate kinase compare
AO353_13640 -1.5 -4.0 histidine kinase compare
AO353_27650 -1.5 -5.0 cell division protein FtsK compare
AO353_02975 -1.4 -3.6 aspartate kinase compare
AO353_02140 -1.4 -8.5 BolA family transcriptional regulator conserved
AO353_08485 -1.4 -9.7 threonine dehydratase compare
AO353_09440 -1.4 -2.8 type VI secretion protein compare
AO353_03015 -1.4 -3.3 arginine N-succinyltransferase compare
AO353_08885 -1.3 -10.0 polyphosphate kinase compare
AO353_17100 -1.3 -3.3 hypothetical protein compare
AO353_15725 -1.3 -4.0 hypothetical protein compare
AO353_12145 -1.3 -4.5 nitrogen regulation protein NR(I) compare
AO353_15250 -1.3 -3.1 cytochrome B compare
AO353_06050 -1.3 -6.0 exodeoxyribonuclease V subunit gamma compare
AO353_02810 -1.3 -7.0 histidine kinase compare
AO353_08880 -1.3 -2.4 exopolyphosphatase compare
AO353_13245 -1.3 -5.6 hypothetical protein compare
AO353_11165 -1.2 -7.1 hypothetical protein compare
AO353_06040 -1.2 -3.3 exodeoxyribonuclease V subunit alpha compare
AO353_03715 -1.2 -2.6 H-NS histone compare
AO353_11530 -1.2 -6.9 diguanylate cyclase compare
AO353_05080 -1.2 -7.7 sulfate adenylyltransferase compare
AO353_04565 -1.2 -5.0 nucleoid-associated protein compare
AO353_00865 -1.2 -7.4 phosphoenolpyruvate synthase compare
AO353_03515 -1.2 -2.0 cold-shock protein compare
AO353_28700 -1.1 -3.1 hypothetical protein compare
AO353_11750 -1.1 -2.4 ATPase compare
AO353_14775 -1.1 -4.7 hypothetical protein compare
AO353_14420 -1.1 -3.6 molecular chaperone DnaK compare
AO353_16805 -1.1 -4.6 recombinase RecA compare
AO353_06045 -1.1 -5.4 exodeoxyribonuclease V subunit beta compare
AO353_06155 -1.1 -5.8 copper-transporting ATPase compare
AO353_12240 -1.1 -3.9 histidine utilization repressor compare
AO353_03250 -1.1 -1.6 gluconokinase compare
AO353_12420 -1.1 -2.9 predicted FeS cluster maintenance protein (from data) compare
AO353_14220 -1.1 -1.8 ribosomal large subunit pseudouridine synthase D compare
AO353_02595 -1.1 -2.0 cobalamin synthase compare
AO353_10430 -1.0 -2.6 chromosome partitioning protein ParB compare
AO353_25335 -1.0 -2.1 malonate decarboxylase acyl carrier protein compare
AO353_16810 -1.0 -3.3 recombinase RecX compare
AO353_01410 -1.0 -2.9 ribonuclease E compare
AO353_10455 -1.0 -1.4 tRNA modification GTPase MnmE compare
AO353_16210 -1.0 -6.9 XRE family transcriptional regulator compare
AO353_02550 -1.0 -3.0 TetR family transcriptional regulator compare
AO353_04650 -1.0 -2.2 molybdenum cofactor biosynthesis protein MoaE compare
AO353_00490 -1.0 -2.8 PasA protein compare
AO353_19530 -0.9 -1.9 quinohemoprotein amine dehydrogenase compare
AO353_12105 -0.9 -4.5 peptidase S41 compare
AO353_14405 -0.9 -5.9 ATPase compare
AO353_02060 -0.9 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_00650 -0.9 -2.2 cytochrome biogenesis protein compare
AO353_09050 -0.9 -3.0 recombinase XerC compare
AO353_00515 -0.9 -2.5 hypothetical protein compare
AO353_09265 -0.9 -2.3 hypothetical protein compare
AO353_02520 -0.9 -2.2 sodium transporter compare
AO353_11850 -0.9 -2.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_20175 -0.9 -2.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_09890 -0.9 -3.8 phosphate ABC transporter ATP-binding protein compare
AO353_11920 -0.9 -1.9 hypothetical protein compare
AO353_20630 -0.9 -4.7 SAM-dependent methyltransferase compare
AO353_03300 -0.9 -2.2 hypothetical protein compare
AO353_00605 -0.9 -4.4 cytochrome C oxidase Cbb3 compare
AO353_10435 -0.9 -5.2 chromosome partitioning protein compare
AO353_12345 -0.8 -1.8 twin-arginine protein translocation system subunit TatC compare
AO353_17205 -0.8 -2.5 beta-ketoadipyl CoA thiolase compare
AO353_24190 -0.8 -2.9 hypothetical protein compare
AO353_12690 -0.8 -0.9 acyl carrier protein compare
AO353_14395 -0.8 -2.9 poly(A) polymerase compare
AO353_02145 -0.8 -3.0 hypothetical protein compare
AO353_03585 -0.8 -1.5 ATP-dependent DNA helicase RuvA compare
AO353_27550 -0.8 -1.7 hypothetical protein compare
AO353_04180 -0.8 -4.9 glycerol kinase compare
AO353_00610 -0.8 -1.2 cytochrome C oxidase Cbb3 compare
AO353_15210 -0.8 -2.8 Zn-dependent hydrolase compare
AO353_12080 -0.8 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_17175 -0.8 -2.2 beta-ketoadipyl CoA thiolase compare
AO353_15975 -0.8 -2.5 GntR family transcriptional regulator compare
AO353_06515 -0.8 -4.7 hypothetical protein compare
AO353_01375 -0.8 -3.9 phosphate acyltransferase compare
AO353_13100 -0.8 -1.3 GTPase RsgA compare
AO353_28910 -0.7 -2.5 hypothetical protein compare
AO353_16845 -0.7 -4.5 LysR family transcriptional regulator compare
AO353_05520 -0.7 -3.1 nicotinate-nucleotide pyrophosphorylase compare
AO353_19360 -0.7 -2.0 peroxiredoxin compare
AO353_25945 -0.7 -2.8 hypothetical protein compare
AO353_27245 -0.7 -3.1 lysozyme compare
AO353_26520 -0.7 -2.0 TetR family transcriptional regulator compare
AO353_19090 -0.7 -1.5 MarR family transcriptional regulator compare
AO353_22375 -0.7 -2.7 cytochrome c-550 PedF compare
AO353_19300 -0.7 -3.1 exonuclease compare
AO353_09045 -0.7 -1.7 hypothetical protein compare
AO353_17750 -0.7 -1.9 transcriptional regulator compare
AO353_17445 -0.7 -2.1 hypothetical protein compare
AO353_08115 -0.7 -3.4 energy transducer TonB compare
AO353_08975 -0.7 -3.6 heme biosynthesis protein HemY compare
AO353_02040 -0.7 -2.0 integration host factor subunit beta compare
AO353_15730 -0.7 -1.2 hypothetical protein compare
AO353_09660 -0.7 -1.1 hypothetical protein compare
AO353_03025 -0.7 -2.5 acetylornithine aminotransferase compare
AO353_18700 -0.7 -2.1 flagellar biogenesis protein compare
AO353_10930 -0.7 -4.1 DNA polymerase I compare
AO353_03520 -0.7 -1.9 hypothetical protein compare
AO353_19295 -0.7 -1.8 hypothetical protein compare
AO353_21430 -0.7 -2.1 hypothetical protein compare
AO353_03365 -0.7 -4.4 transcriptional regulator compare
AO353_06160 -0.7 -2.8 transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium L-Lactate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium L-Lactate across organisms