Experiment set1IT078 for Rahnella sp. WP5

Compare to:

L-Glutamine nitrogen source; RCH2 media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -6.8 -4.7 3-isopropylmalate dehydratase small subunit compare
EX31_RS15020 -6.3 -12.9 ketol-acid reductoisomerase compare
EX31_RS03940 -6.1 -6.0 homoserine kinase compare
EX31_RS20980 -6.1 -4.2 glutamate 5-kinase compare
EX31_RS13275 -6.1 -10.2 diaminopimelate decarboxylase compare
EX31_RS12785 -6.0 -10.0 aspartate carbamoyltransferase compare
EX31_RS15005 -6.0 -14.4 dihydroxy-acid dehydratase compare
EX31_RS12400 -5.9 -4.1 RNA polymerase factor sigma-54 compare
EX31_RS14215 -5.9 -18.8 cystathionine gamma-synthase compare
EX31_RS03685 -5.8 -11.8 3-isopropylmalate dehydrogenase compare
EX31_RS13445 -5.8 -11.1 argininosuccinate synthase compare
EX31_RS14190 -5.7 -13.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS03830 -5.7 -14.6 carbamoyl-phosphate synthase large subunit compare
EX31_RS16855 -5.6 -13.1 phosphoribosylamine--glycine ligase compare
EX31_RS14205 -5.6 -13.6 methylenetetrahydrofolate reductase compare
EX31_RS02690 -5.6 -3.9 pyrroline-5-carboxylate reductase compare
EX31_RS14500 -5.6 -11.9 orotate phosphoribosyltransferase compare
EX31_RS22695 -5.6 -6.6 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS04035 -5.5 -12.4 phosphoserine phosphatase compare
EX31_RS03945 -5.5 -22.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS03690 -5.5 -9.8 3-isopropylmalate dehydratase large subunit compare
EX31_RS21470 -5.5 -6.5 phosphoglycerate dehydrogenase compare
EX31_RS03935 -5.4 -10.4 threonine synthase compare
EX31_RS20975 -5.4 -5.3 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS14180 -5.4 -16.5 argininosuccinate lyase compare
EX31_RS02530 -5.3 -5.2 ABC transporter ATP-binding protein compare
EX31_RS13160 -5.3 -12.2 amino-acid N-acetyltransferase compare
EX31_RS02520 -5.2 -3.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS12825 -5.2 -7.9 ornithine carbamoyltransferase compare
EX31_RS21895 -5.1 -16.5 phosphoribosylformylglycinamidine synthase compare
EX31_RS23245 -5.1 -16.6 asparagine synthase B compare
EX31_RS20495 -5.1 -9.1 outer membrane protein assembly factor BamB compare
EX31_RS03835 -5.1 -9.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS03775 -5.0 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS09965 -5.0 -3.5 anthranilate phosphoribosyltransferase compare
EX31_RS09855 -5.0 -3.4 orotidine-5'-phosphate decarboxylase compare
EX31_RS11735 -4.9 -10.0 homoserine O-succinyltransferase compare
EX31_RS11460 -4.9 -3.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS16860 -4.9 -21.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS11440 -4.8 -4.7 histidinol dehydrogenase compare
EX31_RS02515 -4.8 -3.3 PAS domain-containing protein compare
EX31_RS09970 -4.8 -5.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS11465 -4.8 -4.6 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS20450 -4.7 -3.3 IMP dehydrogenase compare
EX31_RS12510 -4.7 -16.7 FAD-dependent oxidoreductase compare
EX31_RS07895 -4.6 -12.4 phosphoadenylyl-sulfate reductase compare
EX31_RS22625 -4.6 -4.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS12515 -4.6 -29.3 glutamate synthase large subunit compare
EX31_RS22750 -4.6 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS18530 -4.5 -15.0 leucine-responsive transcriptional regulator Lrp compare
EX31_RS09975 -4.5 -6.8 tryptophan synthase subunit beta compare
EX31_RS07955 -4.5 -22.9 GTP diphosphokinase compare
EX31_RS14185 -4.5 -11.2 acetylglutamate kinase compare
EX31_RS19570 -4.5 -14.3 amidophosphoribosyltransferase compare
EX31_RS03250 -4.4 -11.1 RNA polymerase-binding protein DksA compare
EX31_RS11470 -4.4 -4.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS08745 -4.4 -3.0 50S ribosomal protein L9 compare
EX31_RS18095 -4.3 -4.2 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS09980 -4.3 -5.8 tryptophan synthase subunit alpha compare
EX31_RS22620 -4.3 -5.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS07585 -4.2 -11.2 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS09890 -4.2 -11.5 HTH-type transcriptional regulator CysB compare
EX31_RS19610 -4.2 -7.0 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS24385 -4.2 -4.0 dihydroorotase compare
EX31_RS11455 -4.1 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS25365 -4.1 -2.8 50S ribosomal protein L31 compare
EX31_RS09960 -4.1 -4.9 glutamine amidotransferase compare
EX31_RS09955 -4.1 -7.8 anthranilate synthase component 1 compare
EX31_RS11445 -4.1 -7.8 histidinol-phosphate transaminase compare
EX31_RS07870 -4.0 -11.4 adenylyl-sulfate kinase compare
EX31_RS07900 -3.9 -19.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS05785 -3.9 -5.9 superoxide dismutase [Mn] compare
EX31_RS20175 -3.9 -10.8 cysteine synthase A compare
EX31_RS11450 -3.8 -6.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS22250 -3.7 -5.7 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS18255 -3.6 -2.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS23440 -3.6 -2.5 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS20735 -3.5 -5.4 exodeoxyribonuclease V subunit beta compare
EX31_RS03680 -3.5 -13.7 2-isopropylmalate synthase compare
EX31_RS22430 -3.4 -3.0 hemolysin expression modulator Hha compare
EX31_RS07590 -3.4 -2.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS07905 -3.4 -17.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS22245 -3.3 -4.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS14340 -3.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS06055 -3.3 -4.4 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS14310 -3.2 -5.7 6-phosphofructokinase compare
EX31_RS14335 -3.2 -2.2 serine O-acetyltransferase compare
EX31_RS18540 -3.1 -4.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS21850 -3.1 -3.0 pyridoxine 5'-phosphate synthase compare
EX31_RS07560 -3.1 -21.3 ATP-dependent chaperone ClpB compare
EX31_RS04105 -3.1 -2.9 helix-turn-helix domain-containing protein compare
EX31_RS07880 -3.0 -19.1 sulfate adenylyltransferase subunit CysD compare
EX31_RS08720 -2.9 -14.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS09550 -2.9 -3.3 flagellar assembly protein FliH compare
EX31_RS11675 -2.9 -3.3 Holliday junction branch migration protein RuvA compare
EX31_RS23495 -2.8 -8.3 Tol-Pal system protein TolB compare
EX31_RS09565 -2.8 -1.6 flagellar hook-length control protein FliK compare
EX31_RS07875 -2.8 -17.0 sulfate adenylyltransferase subunit CysN compare
EX31_RS23500 -2.7 -5.6 peptidoglycan-associated lipoprotein Pal compare
EX31_RS06060 -2.7 -6.3 phosphate ABC transporter permease PstA compare
EX31_RS25370 -2.6 -12.3 HTH-type transcriptional regulator MetR compare
EX31_RS15010 -2.6 -10.3 threonine ammonia-lyase, biosynthetic compare
EX31_RS09080 -2.6 -1.9 LysR family transcriptional regulator compare
EX31_RS25340 -2.5 -6.0 hypothetical protein compare
EX31_RS19205 -2.5 -4.7 50S ribosomal protein L25 compare
EX31_RS15870 -2.5 -5.6 glutamate--ammonia ligase compare
EX31_RS07595 -2.5 -8.2 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS06070 -2.5 -10.5 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS04630 -2.5 -13.2 aspartate aminotransferase family protein compare
EX31_RS20190 -2.5 -2.3 PTS glucose transporter subunit IIA compare
EX31_RS08535 -2.4 -4.0 30S ribosome-binding factor RbfA compare
EX31_RS12875 -2.4 -2.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS24325 -2.4 -4.2 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
EX31_RS04710 -2.4 -5.2 adenine-specific DNA-methyltransferase compare
EX31_RS11525 -2.3 -3.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS07830 -2.3 -7.5 murein hydrolase activator NlpD compare
EX31_RS11315 -2.3 -3.4 flagellar basal body rod protein FlgB compare
EX31_RS07785 -2.3 -2.2 carbon storage regulator CsrA compare
EX31_RS09560 -2.3 -3.6 flagella biosynthesis chaperone FliJ compare
EX31_RS15655 -2.2 -2.1 hypothetical protein compare
EX31_RS23480 -2.2 -4.9 Tol-Pal system protein TolQ compare
EX31_RS23490 -2.2 -3.6 cell envelope integrity protein TolA compare
EX31_RS10115 -2.2 -10.0 formyltetrahydrofolate deformylase compare
EX31_RS10515 -2.2 -5.2 disulfide bond formation protein DsbB compare
EX31_RS00920 -2.2 -2.9 DUF1493 family protein compare
EX31_RS15880 -2.2 -9.6 nitrogen regulation protein NR(I) compare
EX31_RS23485 -2.2 -2.9 colicin uptake protein TolR compare
EX31_RS06065 -2.2 -8.1 phosphate ABC transporter permease PstC compare
EX31_RS01530 -2.2 -2.0 hypothetical protein compare
EX31_RS24220 -2.1 -2.4 hypothetical protein compare
EX31_RS04325 -2.1 -1.4 hypothetical protein compare
EX31_RS18525 -2.0 -4.4 DNA translocase FtsK compare
EX31_RS03645 -2.0 -2.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS15155 -2.0 -2.9 diaminopimelate epimerase compare
EX31_RS03480 -1.9 -4.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS09585 -1.9 -1.7 flagellar biosynthetic protein FliO compare
EX31_RS04390 -1.9 -3.3 DNA polymerase III subunit chi compare
EX31_RS02325 -1.8 -2.3 GNAT family N-acetyltransferase compare
EX31_RS02365 -1.8 -1.3 hypothetical protein compare
EX31_RS14200 -1.8 -11.4 phosphoenolpyruvate carboxylase compare
EX31_RS09465 -1.8 -4.9 flagellar export chaperone FliS compare
EX31_RS23315 -1.8 -6.2 replication initiation negative regulator SeqA compare
EX31_RS03400 -1.8 -6.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS09600 -1.7 -2.3 flagellar type III secretion system protein FliR compare
EX31_RS11435 -1.7 -4.6 ATP phosphoribosyltransferase compare
EX31_RS09575 -1.7 -5.1 flagellar motor switch protein FliM compare
EX31_RS14405 -1.7 -2.0 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS15910 -1.7 -8.7 thiol:disulfide interchange protein DsbA compare
EX31_RS11350 -1.7 -4.0 protein phosphatase CheZ compare
EX31_RS22740 -1.7 -8.8 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS06150 -1.7 -12.5 transcriptional regulator AsnC compare
EX31_RS08595 -1.7 -3.3 transcription elongation factor GreA compare
EX31_RS03330 -1.7 -2.7 hypoxanthine phosphoribosyltransferase compare
EX31_RS11425 -1.6 -4.7 flagellar transcriptional regulator FlhD compare
EX31_RS14325 -1.6 -9.4 envelope stress sensor histidine kinase CpxA compare
EX31_RS06140 -1.6 -10.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS03790 -1.6 -2.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS11300 -1.6 -6.7 flagellar hook protein FlgE compare
EX31_RS11330 -1.6 -6.3 flagellar synthesis chaperone protein FlgN compare
EX31_RS10030 -1.6 -2.2 YciY family protein compare
EX31_RS20185 -1.6 -6.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS01760 -1.5 -4.7 hypothetical protein compare
EX31_RS19655 -1.5 -5.2 beta-ketoacyl-ACP synthase I compare
EX31_RS25105 -1.5 -1.3 DUF2474 domain-containing protein compare
EX31_RS13280 -1.5 -8.5 LysR family transcriptional regulator compare
EX31_RS11305 -1.5 -5.2 flagellar hook assembly protein FlgD compare
EX31_RS21400 -1.5 -5.3 transketolase compare
EX31_RS11265 -1.5 -4.5 flagellar hook-filament junction protein FlgL compare
EX31_RS02525 -1.5 -6.4 ABC transporter permease compare
EX31_RS15875 -1.5 -9.3 nitrogen regulation protein NR(II) compare
EX31_RS08140 -1.5 -2.4 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS11320 -1.5 -4.7 flagellar basal body P-ring formation protein FlgA compare
EX31_RS11340 -1.5 -6.4 flagellar biosynthesis protein FlhA compare
EX31_RS09540 -1.4 -5.7 flagellar basal body M-ring protein FliF compare
EX31_RS11815 -1.4 -8.3 glucose-6-phosphate isomerase compare
EX31_RS11295 -1.4 -5.0 flagellar basal body rod protein FlgF compare
EX31_RS09555 -1.4 -6.1 flagellum-specific ATP synthase FliI compare
EX31_RS19480 -1.4 -6.3 acetate kinase compare
EX31_RS20180 -1.4 -3.1 phosphocarrier protein Hpr compare
EX31_RS11285 -1.4 -3.9 flagellar basal body L-ring protein FlgH compare
EX31_RS09460 -1.4 -5.0 flagellar filament capping protein FliD compare
EX31_RS06340 -1.4 -2.0 thiol peroxidase compare
EX31_RS05145 -1.4 -5.8 inorganic phosphate transporter PitA compare
EX31_RS13480 -1.4 -4.0 site-specific tyrosine recombinase XerD compare
EX31_RS09545 -1.3 -3.7 flagellar motor switch protein FliG compare
EX31_RS09670 -1.3 -2.3 bleomycin resistance protein compare
EX31_RS21825 -1.3 -6.6 elongation factor 4 compare
EX31_RS01225 -1.3 -2.5 glutaredoxin-dependent arsenate reductase compare
EX31_RS09895 -1.3 -2.5 type I DNA topoisomerase compare
EX31_RS11065 -1.3 -5.1 TetR/AcrR family transcriptional regulator compare
EX31_RS07380 -1.3 -1.8 redox-regulated ATPase YchF compare
EX31_RS11270 -1.2 -6.7 flagellar hook-associated protein FlgK compare
EX31_RS11010 -1.2 -1.3 DgsA anti-repressor MtfA compare
EX31_RS18040 -1.2 -8.6 porin OmpA compare
EX31_RS13045 -1.2 -7.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS09450 -1.2 -6.5 RNA polymerase sigma factor FliA compare
EX31_RS09590 -1.2 -2.6 flagellar type III secretion system pore protein FliP compare
EX31_RS11310 -1.2 -5.0 flagellar basal body rod protein FlgC compare
EX31_RS24625 -1.2 -1.9 DUF2766 domain-containing protein compare
EX31_RS04725 -1.2 -3.0 shikimate kinase AroK compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source L-Glutamine in Rahnella sp. WP5

For nitrogen source L-Glutamine across organisms