Experiment set1IT078 for Pantoea sp. MT58

Compare to:

Cadmium acetate dihydrate 8 uM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_07020 +1.5 3.9 hypothetical protein compare
IAI47_07010 +1.2 2.8 ABC transporter permease compare
IAI47_03645 +1.2 10.6 O-antigen ligase family protein compare
IAI47_00670 +1.2 11.0 sugar glycosyltransferase compare
IAI47_03640 +1.1 10.2 glycosyltransferase compare
IAI47_01780 +1.1 2.8 Fe-S biogenesis protein NfuA compare
IAI47_21610 +1.0 7.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_10755 +1.0 2.6 DUF1289 domain-containing protein compare
IAI47_01135 +1.0 1.3 hypothetical protein compare
IAI47_09550 +1.0 3.9 hypothetical protein compare
IAI47_16595 +0.9 3.2 DUF4102 domain-containing protein compare
IAI47_14695 +0.9 3.9 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_14700 +0.9 5.3 protoheme IX farnesyltransferase compare
IAI47_21600 +0.9 2.5 EamA family transporter compare
IAI47_13750 +0.9 3.7 succinate dehydrogenase iron-sulfur subunit compare
IAI47_00675 +0.8 7.9 glycosyltransferase family 9 protein compare
IAI47_21595 +0.8 5.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_13415 +0.8 6.4 L,D-transpeptidase family protein compare
IAI47_11535 +0.8 1.9 DcrB-related protein compare
IAI47_21155 +0.8 1.6 IS6 family transposase compare
IAI47_14690 +0.8 4.1 cytochrome o ubiquinol oxidase subunit III compare
IAI47_12355 +0.8 1.2 hydroxymyristoyl-ACP dehydratase compare
IAI47_10500 +0.8 5.5 dipeptide/tripeptide permease DtpA compare
IAI47_10430 +0.8 3.1 hypothetical protein compare
IAI47_06365 +0.7 2.6 NADH-quinone oxidoreductase subunit B compare
IAI47_02350 +0.7 1.2 tRNA-Thr compare
IAI47_07905 +0.7 1.1 Arc family DNA-binding protein compare
IAI47_07015 +0.7 4.3 ABC transporter ATP-binding protein compare
IAI47_17710 +0.7 5.1 glutamate/aspartate:proton symporter GltP compare
IAI47_07005 +0.7 3.5 glycosyltransferase family 4 protein compare
IAI47_13850 +0.7 2.1 LexA regulated protein compare
IAI47_21605 +0.6 5.3 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
IAI47_21375 +0.6 2.7 CsbD family protein compare
IAI47_07030 +0.6 4.0 HAD family hydrolase compare
IAI47_14295 +0.6 2.6 hypothetical protein compare
IAI47_07930 +0.6 1.3 DUF2158 domain-containing protein compare
IAI47_03745 +0.6 3.0 YecA family protein compare
IAI47_18470 +0.6 5.5 ECA oligosaccharide polymerase compare
IAI47_07000 +0.6 4.9 UDP-glucose 4-epimerase GalE compare
IAI47_16670 +0.6 1.5 stress protein compare
IAI47_04855 +0.6 3.3 anti-sigma-E factor RseA compare
IAI47_06450 +0.6 1.7 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_15080 +0.5 2.8 cold-shock protein compare
IAI47_10725 +0.5 1.6 DUF1656 domain-containing protein compare
IAI47_18490 +0.5 2.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_02725 +0.5 2.9 gamma-glutamylcyclotransferase compare
IAI47_20630 +0.5 3.0 DUF2534 family protein compare
IAI47_11655 +0.5 1.6 hypothetical protein compare
IAI47_17250 +0.5 4.0 cell division protein ZapE compare
IAI47_02380 +0.5 1.1 DNA-binding transcriptional regulator Fis compare
IAI47_13155 +0.5 1.1 H-NS histone family protein compare
IAI47_12435 +0.5 1.2 hypothetical protein compare
IAI47_14685 +0.5 3.6 cytochrome o ubiquinol oxidase subunit I compare
IAI47_16405 +0.5 2.1 siderophore-iron reductase FhuF compare
IAI47_09955 +0.5 1.6 SDR family oxidoreductase compare
IAI47_03805 +0.5 2.6 FAD assembly factor SdhE compare
IAI47_08470 +0.5 4.1 murein DD-endopeptidase MepM compare
IAI47_12155 +0.5 3.4 flagellar hook assembly protein FlgD compare
IAI47_07985 +0.5 2.7 flagellar biosynthetic protein FliO compare
IAI47_08005 +0.5 3.0 flagellar hook-length control protein FliK compare
IAI47_17510 +0.5 2.1 DUF1330 domain-containing protein compare
IAI47_19890 +0.5 0.8 hypothetical protein compare
IAI47_00935 +0.5 2.1 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_02715 +0.5 4.1 outer membrane protein assembly factor compare
IAI47_06420 +0.5 1.5 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_11845 +0.5 1.8 hypothetical protein compare
IAI47_04865 +0.5 1.6 SoxR-reducing system protein RseC compare
IAI47_06170 +0.5 1.8 YfcL family protein compare
IAI47_03575 +0.5 1.8 DUF2884 domain-containing protein compare
IAI47_07975 +0.5 1.9 flagellar biosynthesis protein FliQ compare
IAI47_02835 +0.5 2.7 DnaA initiator-associating protein DiaA compare
IAI47_08280 +0.4 3.0 flagellar transcriptional regulator FlhD compare
IAI47_03335 +0.4 2.7 M20 peptidase aminoacylase family protein compare
IAI47_07700 +0.4 1.6 EAL domain-containing protein compare
IAI47_02890 +0.4 2.4 EnvZ/OmpR regulon moderator MzrA compare
IAI47_08570 +0.4 2.2 baseplate J/gp47 family protein compare
IAI47_12135 +0.4 3.6 flagellar basal body L-ring protein FlgH compare
IAI47_18480 +0.4 3.4 lipid III flippase WzxE compare
IAI47_05735 +0.4 1.1 hypothetical protein compare
IAI47_02520 +0.4 3.4 malate dehydrogenase compare
IAI47_10845 +0.4 1.5 major outer membrane lipoprotein compare
IAI47_08160 +0.4 3.0 RNA polymerase sigma factor FliA compare
IAI47_00540 +0.4 1.3 hypothetical protein compare
IAI47_20650 +0.4 1.6 polyprenyl synthetase family protein compare
IAI47_07025 +0.4 2.5 glycosyltransferase family 4 protein compare
IAI47_18540 +0.4 2.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_21830 +0.4 0.6 hypothetical protein compare
IAI47_07300 +0.4 1.7 hypothetical protein compare
IAI47_07995 +0.4 3.2 flagellar motor switch protein FliM compare
IAI47_12145 +0.4 2.7 flagellar basal body rod protein FlgF compare
IAI47_05465 +0.4 1.8 bile acid:sodium symporter compare
IAI47_08030 +0.4 2.9 flagellar M-ring protein FliF compare
IAI47_14545 +0.4 1.9 hypothetical protein compare
IAI47_15235 +0.4 1.0 hydroxyisourate hydrolase compare
IAI47_08590 +0.4 1.1 hypothetical protein compare
IAI47_08725 +0.4 0.9 hypothetical protein compare
IAI47_17050 +0.4 2.1 preprotein translocase subunit SecG compare
IAI47_14680 +0.4 2.1 cytochrome o ubiquinol oxidase subunit II compare
IAI47_19355 +0.4 1.6 response regulator compare
IAI47_02400 +0.4 0.6 YhdT family protein compare
IAI47_12130 +0.4 2.9 flagellar basal body P-ring protein FlgI compare
IAI47_00510 +0.4 1.4 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
IAI47_02385 +0.4 2.7 tRNA dihydrouridine synthase DusB compare
IAI47_15850 +0.4 1.6 prepilin peptidase-dependent pilin compare
IAI47_06780 +0.4 2.3 iron-sulfur cluster carrier protein ApbC compare
IAI47_15095 +0.4 1.5 hypothetical protein compare
IAI47_00840 +0.4 2.1 ribonuclease E activity regulator RraA compare
IAI47_17230 +0.4 2.6 ClpXP protease specificity-enhancing factor compare
IAI47_00930 +0.4 2.8 DNA-binding transcriptional regulator OxyR compare
IAI47_00860 +0.4 2.8 DNA-binding transcriptional regulator CytR compare
IAI47_04140 +0.4 2.2 7-carboxy-7-deazaguanine synthase QueE compare
IAI47_09950 +0.4 1.9 hypothetical protein compare
IAI47_10055 +0.4 1.9 acetyltransferase compare
IAI47_18365 +0.4 3.2 phospholipase A compare
IAI47_09825 +0.4 2.3 xanthine dehydrogenase accessory protein XdhC compare
IAI47_12140 +0.4 2.5 flagellar basal-body rod protein FlgG compare
IAI47_11470 +0.4 1.4 IS1 family transposase compare
IAI47_14555 +0.4 0.9 hemolysin expression modulator Hha compare
IAI47_19050 +0.4 1.1 hypothetical protein compare
IAI47_08020 +0.4 2.1 flagellar assembly protein FliH compare
IAI47_04740 +0.4 1.3 hypothetical protein compare
IAI47_13320 +0.4 1.7 ABC transporter ATP-binding protein compare
IAI47_21675 +0.4 1.4 helix-turn-helix domain-containing protein compare
IAI47_08350 +0.4 2.5 flagellar biosynthesis protein FlhA compare
IAI47_16420 +0.4 2.9 LacI family DNA-binding transcriptional regulator compare
IAI47_12170 +0.3 2.4 flagellar basal body P-ring formation protein FlgA compare
IAI47_05860 +0.3 1.9 YlcG family protein compare
IAI47_11520 +0.3 1.4 type VI secretion system tip protein VgrG compare
IAI47_02720 +0.3 3.1 translocation/assembly module TamB compare
IAI47_20500 +0.3 1.9 type II toxin-antitoxin system YhaV family toxin compare
IAI47_09545 +0.3 2.1 two-component system response regulator RstA compare
IAI47_10475 +0.3 1.9 endonuclease III compare
IAI47_16940 +0.3 1.7 type 1 glutamine amidotransferase compare
IAI47_00730 +0.3 0.5 glutaredoxin 3 compare
IAI47_14210 +0.3 1.3 hypothetical protein compare
IAI47_13300 +0.3 1.3 GNAT family N-acetyltransferase compare
IAI47_06810 +0.3 1.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
IAI47_12165 +0.3 2.0 flagellar basal body rod protein FlgB compare
IAI47_06570 +0.3 2.3 nucleoid-associated protein YejK compare
IAI47_03935 +0.3 2.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
IAI47_06040 +0.3 0.8 DNA polymerase V compare
IAI47_21760 +0.3 2.4 CitMHS family transporter compare
IAI47_07510 +0.3 1.6 hypothetical protein compare
IAI47_21275 +0.3 1.5 ABC transporter permease subunit compare
IAI47_05600 +0.3 1.8 universal stress protein compare
IAI47_01825 +0.3 2.1 two-component system sensor histidine kinase EnvZ compare
IAI47_09675 +0.3 0.7 YoaK family small membrane protein compare
IAI47_08000 +0.3 1.9 flagellar basal body-associated protein FliL compare
IAI47_05540 +0.3 1.9 DUF2502 domain-containing protein compare
IAI47_17205 +0.3 0.8 PTS phosphocarrier protein NPr compare
IAI47_10100 +0.3 1.0 ABC transporter ATP-binding protein compare
IAI47_15980 +0.3 2.3 catabolite repressor/activator compare
IAI47_08285 +0.3 2.3 flagellar transcriptional regulator FlhC compare
IAI47_13195 +0.3 1.8 DNA starvation/stationary phase protection protein Dps compare
IAI47_09780 +0.3 1.5 ABC transporter permease compare
IAI47_15425 +0.3 1.6 Rho-binding antiterminator compare
IAI47_10120 +0.3 1.7 ATP-binding protein compare
IAI47_11200 +0.3 1.1 DotU family type IV/VI secretion system protein compare
IAI47_13440 +0.3 1.8 YbhQ family protein compare
IAI47_07910 +0.3 2.5 DNA (cytosine-5-)-methyltransferase compare
IAI47_18065 +0.3 1.7 deoxyribonuclease V compare
IAI47_05035 +0.3 0.7 nucleoside-diphosphate kinase compare
IAI47_08130 +0.3 1.3 flagella biosynthesis regulatory protein FliT compare
IAI47_06625 +0.3 2.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_12270 +0.3 1.3 YceK/YidQ family lipoprotein compare
IAI47_09050 +0.3 1.8 thymidine kinase compare
IAI47_01655 +0.3 1.7 gluconokinase compare
IAI47_18820 +0.3 1.8 helix-turn-helix domain-containing protein compare
IAI47_08015 +0.3 2.0 flagellum-specific ATP synthase FliI compare
IAI47_19785 +0.3 1.3 DUF1232 domain-containing protein compare
IAI47_21585 +0.3 1.7 haloacid dehalogenase type II compare
IAI47_19500 +0.3 1.5 Insecticidal toxin complex protein tccz compare
IAI47_01750 +0.3 1.5 glycerol-3-phosphate dehydrogenase compare
IAI47_09285 +0.3 1.2 osmotically-inducible lipoprotein OsmB compare
IAI47_01100 +0.3 2.4 malate dehydrogenase (quinone) compare
IAI47_11630 +0.3 0.9 hypothetical protein compare
IAI47_11635 +0.3 0.9 hypothetical protein compare
IAI47_10140 +0.3 2.0 LysR family transcriptional regulator compare
IAI47_14720 +0.3 1.7 protein deglycase YajL compare
IAI47_13710 +0.3 0.9 cyd operon protein YbgE compare
IAI47_16560 +0.3 1.6 hypothetical protein compare
IAI47_01380 +0.3 1.1 hypothetical protein compare
IAI47_11020 +0.3 1.8 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
IAI47_11140 +0.3 1.5 DUF2291 domain-containing protein compare
IAI47_05395 +0.3 2.4 sulfate/thiosulfate ABC transporter permease CysW compare
IAI47_03170 +0.3 0.8 antibiotic biosynthesis monooxygenase compare
IAI47_15005 +0.3 0.7 hypothetical protein compare
IAI47_11850 +0.3 1.1 hypothetical protein compare
IAI47_13110 +0.3 1.5 DUF4385 domain-containing protein compare
IAI47_14015 +0.3 1.5 ribosome silencing factor compare
IAI47_07285 +0.3 1.4 hypothetical protein compare
IAI47_15415 +0.3 1.3 aminoacyl-tRNA hydrolase compare
IAI47_01715 +0.3 1.4 malonate decarboxylase holo-ACP synthase compare
IAI47_13230 +0.3 1.7 ATP-binding cassette domain-containing protein compare
IAI47_06455 +0.3 1.4 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_02830 +0.3 1.2 divisome-associated lipoprotein YraP compare
IAI47_17485 +0.3 2.0 TIM barrel protein compare
IAI47_08145 +0.3 2.4 flagellin FliC compare
IAI47_19190 +0.3 1.3 cupin domain-containing protein compare
IAI47_15145 +0.3 1.9 beta-Ala-His dipeptidase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cadmium acetate dihydrate in Pantoea sp. MT58

For stress Cadmium acetate dihydrate across organisms