Experiment set1IT077 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium D-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_22800 -4.9 -3.4 sulfite reductase compare
AO353_20695 -4.9 -6.7 O-succinylhomoserine sulfhydrylase compare
AO353_00430 -4.8 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_05705 -4.8 -8.1 oxidoreductase conserved
AO353_20625 -4.8 -3.3 3-isopropylmalate dehydratase compare
AO353_13070 -4.6 -7.1 phosphoserine phosphatase compare
AO353_10670 -4.6 -7.7 shikimate dehydrogenase compare
AO353_07220 -4.5 -7.5 anthranilate synthase compare
AO353_05115 -4.5 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_08185 -4.5 -9.1 methionine biosynthesis protein MetW compare
AO353_02070 -4.4 -7.4 prephenate dehydratase compare
AO353_20635 -4.4 -13.6 3-isopropylmalate dehydrogenase compare
AO353_05715 -4.4 -11.6 lactate utilization protein B/C conserved
AO353_14505 -4.3 -11.2 ketol-acid reductoisomerase compare
AO353_13165 -4.3 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12070 -4.3 -9.5 imidazoleglycerol-phosphate dehydratase compare
AO353_07230 -4.2 -16.4 anthranilate synthase compare
AO353_20620 -4.2 -8.1 isopropylmalate isomerase compare
AO353_06515 -4.2 -11.2 hypothetical protein conserved
AO353_20540 -4.2 -8.9 aromatic amino acid aminotransferase compare
AO353_00310 -4.1 -10.6 transaldolase compare
AO353_12515 -4.1 -21.8 glutamate synthase compare
AO353_05700 -4.0 -12.4 L-lactate permease conserved
AO353_12075 -4.0 -8.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_12365 -4.0 -4.8 phosphoribosyl-AMP cyclohydrolase compare
AO353_02075 -4.0 -11.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20665 -4.0 -11.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08685 -4.0 -8.8 N-acetylglutamate synthase compare
AO353_12115 -3.9 -3.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_14400 -3.9 -4.6 Fis family transcriptional regulator compare
AO353_10025 -3.9 -15.6 pyruvate carboxylase subunit B compare
AO353_08345 -3.9 -10.0 dihydroxy-acid dehydratase compare
AO353_07210 -3.8 -6.9 indole-3-glycerol-phosphate synthase compare
AO353_10030 -3.8 -11.0 pyruvate carboxylase subunit A compare
AO353_08180 -3.8 -14.0 homoserine O-acetyltransferase compare
AO353_05710 -3.8 -15.2 (Fe-S)-binding protein conserved
AO353_12085 -3.8 -9.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_10035 -3.8 -10.6 LysR family transcriptional regulator compare
AO353_05110 -3.8 -12.2 histidinol dehydrogenase compare
AO353_12520 -3.7 -13.6 glutamate synthase compare
AO353_14500 -3.7 -7.1 acetolactate synthase 3 regulatory subunit compare
AO353_05720 -3.7 -14.6 4Fe-4S ferredoxin conserved
AO353_02710 -3.7 -13.8 (p)ppGpp synthetase compare
AO353_11775 -3.7 -9.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_12360 -3.6 -9.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08475 -3.5 -10.9 phosphoserine phosphatase compare
AO353_12500 -3.5 -2.4 shikimate kinase compare
AO353_10710 -3.5 -6.2 tryptophan synthase subunit beta compare
AO353_04105 -3.5 -9.9 argininosuccinate synthase compare
AO353_09240 -3.4 -4.7 acetylglutamate kinase compare
AO353_02685 -3.4 -5.1 phosphoribosylglycinamide formyltransferase compare
AO353_08015 -3.4 -7.2 5,10-methylenetetrahydrofolate reductase compare
AO353_12090 -3.4 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20175 -3.3 -4.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_14495 -3.3 -13.5 acetolactate synthase 3 catalytic subunit compare
AO353_07215 -3.2 -8.9 anthranilate phosphoribosyltransferase compare
AO353_04155 -3.1 -14.3 ornithine carbamoyltransferase compare
AO353_19060 -3.1 -6.2 CysB family transcriptional regulator compare
AO353_07525 -3.1 -15.9 biotin synthase compare
AO353_06520 -3.1 -8.4 murein hydrolase transporter LrgA conserved
AO353_09000 -3.1 -7.3 argininosuccinate lyase compare
AO353_15925 -3.0 -12.9 2-isopropylmalate synthase compare
AO353_03020 -3.0 -10.2 arginine N-succinyltransferase compare
AO353_07155 -3.0 -9.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_08780 -3.0 -9.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08510 -2.9 -6.7 3-phosphoglycerate dehydrogenase compare
AO353_08885 -2.9 -17.4 polyphosphate kinase compare
AO353_06495 -2.8 -6.8 gamma-glutamyl phosphate reductase compare
AO353_10455 -2.8 -2.7 tRNA modification GTPase MnmE compare
AO353_08165 -2.8 -3.3 pyrroline-5-carboxylate reductase compare
AO353_10705 -2.8 -6.4 tryptophan synthase subunit alpha compare
AO353_14370 -2.8 -8.4 glucose-6-phosphate isomerase compare
AO353_03015 -2.8 -6.5 arginine N-succinyltransferase compare
AO353_14115 -2.7 -7.8 gamma-glutamyl kinase compare
AO353_00825 -2.7 -4.8 porin compare
AO353_16940 -2.7 -8.1 deoxycytidine triphosphate deaminase compare
AO353_07515 -2.6 -3.1 transporter compare
AO353_14595 -2.6 -10.8 carbonate dehydratase compare
AO353_02140 -2.6 -11.6 BolA family transcriptional regulator conserved
AO353_03590 -2.5 -4.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_04190 -2.5 -3.4 glycerol-3-phosphate dehydrogenase compare
AO353_15250 -2.4 -4.3 cytochrome B compare
AO353_06040 -2.4 -4.7 exodeoxyribonuclease V subunit alpha compare
AO353_00620 -2.3 -3.8 cytochrome C oxidase Cbb3 compare
AO353_11850 -2.3 -5.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_02720 -2.2 -6.9 cysteine synthase compare
AO353_07505 -2.2 -9.4 dethiobiotin synthetase compare
AO353_08045 -2.1 -13.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07355 -2.1 -6.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13640 -2.0 -5.5 histidine kinase compare
AO353_00750 -2.0 -5.1 GntR family transcriptional regulator compare
AO353_03580 -2.0 -4.6 ATP-dependent DNA helicase RuvB compare
AO353_12105 -2.0 -7.3 peptidase S41 compare
AO353_14775 -2.0 -7.3 hypothetical protein compare
AO353_03615 -2.0 -4.3 cold-shock protein compare
AO353_05105 -2.0 -10.4 histidinol-phosphate aminotransferase compare
AO353_06045 -1.9 -8.3 exodeoxyribonuclease V subunit beta compare
AO353_07520 -1.9 -11.3 8-amino-7-oxononanoate synthase compare
AO353_10945 -1.9 -3.5 cytochrome C compare
AO353_14395 -1.9 -5.1 poly(A) polymerase compare
AO353_18715 -1.8 -2.4 histidine kinase compare
AO353_02250 -1.8 -3.2 chorismate synthase compare
AO353_04175 -1.8 -5.6 glycerol uptake facilitator GlpF compare
AO353_15170 -1.8 -3.0 cytochrome D ubiquinol oxidase subunit III compare
AO353_13140 -1.8 -6.6 tRNA dimethylallyltransferase compare
AO353_05080 -1.8 -10.1 sulfate adenylyltransferase compare
AO353_04355 -1.8 -2.8 homoserine dehydrogenase compare
AO353_18540 -1.7 -3.0 pseudouridine synthase compare
AO353_03520 -1.7 -3.3 hypothetical protein compare
AO353_05075 -1.7 -8.8 adenylylsulfate kinase compare
AO353_05420 -1.7 -2.5 peptide chain release factor 3 compare
AO353_12420 -1.6 -3.8 predicted FeS cluster maintenance protein (from data) compare
AO353_02810 -1.6 -7.3 histidine kinase compare
AO353_02145 -1.6 -4.6 hypothetical protein compare
AO353_00515 -1.6 -3.9 hypothetical protein compare
AO353_10430 -1.5 -3.7 chromosome partitioning protein ParB compare
AO353_09050 -1.5 -3.7 recombinase XerC compare
AO353_27650 -1.4 -4.5 cell division protein FtsK compare
AO353_11165 -1.4 -8.2 hypothetical protein compare
AO353_10905 -1.4 -7.4 zinc ABC transporter ATP-binding protein conserved
AO353_03630 -1.4 -9.6 porin compare
AO353_05340 -1.4 -3.6 histidine kinase compare
AO353_08485 -1.4 -10.0 threonine dehydratase compare
AO353_14420 -1.4 -4.1 molecular chaperone DnaK compare
AO353_00610 -1.4 -1.8 cytochrome C oxidase Cbb3 compare
AO353_00605 -1.3 -5.7 cytochrome C oxidase Cbb3 compare
AO353_02320 -1.3 -6.5 allantoinase compare
AO353_14405 -1.3 -7.3 ATPase compare
AO353_15900 -1.3 -2.4 GTP-binding protein compare
AO353_15830 -1.3 -2.6 transcriptional regulator compare
AO353_09285 -1.3 -7.5 reactive intermediate/imine deaminase compare
AO353_06850 -1.3 -4.2 MFS transporter compare
AO353_06320 -1.3 -3.9 AsnC family transcriptional regulator compare
AO353_10915 -1.3 -8.6 ABC transporter substrate-binding protein compare
AO353_10900 -1.3 -7.4 hypothetical protein compare
AO353_07510 -1.3 -6.3 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_12345 -1.3 -2.4 twin-arginine protein translocation system subunit TatC compare
AO353_09060 -1.3 -2.9 hypothetical protein compare
AO353_15490 -1.3 -2.1 hypothetical protein compare
AO353_06155 -1.3 -7.0 copper-transporting ATPase compare
AO353_03585 -1.2 -2.7 ATP-dependent DNA helicase RuvA compare
AO353_09040 -1.2 -2.0 diaminopimelate epimerase compare
AO353_02040 -1.2 -2.2 integration host factor subunit beta compare
AO353_06050 -1.2 -5.5 exodeoxyribonuclease V subunit gamma compare
AO353_00870 -1.2 -4.3 hypothetical protein compare
AO353_11530 -1.2 -6.4 diguanylate cyclase compare
AO353_09890 -1.1 -4.2 phosphate ABC transporter ATP-binding protein compare
AO353_10440 -1.1 -3.7 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_04220 -1.1 -4.0 chemotaxis protein CheY compare
AO353_24340 -1.1 -1.9 TetR family transcriptional regulator compare
AO353_07895 -1.1 -2.6 fructose-bisphosphate aldolase compare
AO353_11750 -1.1 -2.3 ATPase compare
AO353_20185 -1.1 -4.4 DNA-binding protein compare
AO353_15295 -1.1 -5.2 division/cell wall cluster transcriptional repressor MraZ compare
AO353_01080 -1.0 -6.2 hypothetical protein compare
AO353_02175 -1.0 -2.5 carbon storage regulator compare
AO353_05690 -1.0 -2.9 SsrA-binding protein compare
AO353_20660 -1.0 -3.4 pseudouridine synthase compare
AO353_04565 -1.0 -4.1 nucleoid-associated protein compare
AO353_00875 -1.0 -5.8 transcriptional regulator compare
AO353_13200 -1.0 -6.7 exoribonuclease R compare
AO353_02975 -1.0 -1.9 aspartate kinase compare
AO353_10435 -1.0 -5.4 chromosome partitioning protein compare
AO353_12240 -1.0 -3.7 histidine utilization repressor compare
AO353_03025 -1.0 -3.3 acetylornithine aminotransferase compare
AO353_09030 -1.0 -1.4 iron donor protein CyaY compare
AO353_05625 -0.9 -1.5 transcription elongation factor GreA compare
AO353_04180 -0.9 -5.1 glycerol kinase compare
AO353_16605 -0.9 -6.7 protein-L-isoaspartate O-methyltransferase compare
AO353_11770 -0.9 -1.6 molecular chaperone Hsp33 compare
AO353_15975 -0.9 -3.4 GntR family transcriptional regulator compare
AO353_19750 -0.9 -1.3 diaminopimelate epimerase compare
AO353_01550 -0.9 -4.1 hypothetical protein compare
AO353_19360 -0.9 -1.9 peroxiredoxin compare
AO353_15725 -0.9 -3.0 hypothetical protein compare
AO353_18780 -0.9 -3.9 cobyrinic acid a,c-diamide synthase compare
AO353_24625 -0.9 -2.8 hypothetical protein compare
AO353_09885 -0.9 -1.1 transcriptional regulator PhoU compare
AO353_23245 -0.9 -2.3 DNA-3-methyladenine glycosylase compare
AO353_03235 -0.9 -5.1 glutamate-pyruvate aminotransferase compare
AO353_10730 -0.9 -1.4 hypothetical protein compare
AO353_02195 -0.9 -2.5 spermidine synthase compare
AO353_07075 -0.9 -3.5 elongation factor Tu compare
AO353_28565 -0.9 -2.5 hypothetical protein compare
AO353_07645 -0.8 -1.3 sarcosine oxidase subunit gamma compare
AO353_14930 -0.8 -2.4 GntR family transcriptional regulator compare
AO353_10055 -0.8 -6.0 DNA helicase II compare
AO353_27500 -0.8 -1.9 hypothetical protein compare
AO353_23590 -0.8 -1.9 ArsR family transcriptional regulator compare
AO353_21940 -0.8 -1.9 protein nirG compare
AO353_00635 -0.8 -1.9 hypothetical protein compare
AO353_00650 -0.8 -1.7 cytochrome biogenesis protein compare
AO353_00630 -0.8 -3.7 (Fe-S)-binding protein compare
AO353_12460 -0.8 -4.5 malate dehydrogenase compare
AO353_02100 -0.8 -2.2 phosphoglycolate phosphatase compare
AO353_01355 -0.8 -4.6 3-oxoacyl-ACP synthase compare
AO353_21630 -0.8 -1.9 precorrin-4 C11-methyltransferase compare
AO353_00865 -0.8 -5.0 phosphoenolpyruvate synthase compare
AO353_08265 -0.8 -3.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_27950 -0.8 -1.9 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Sodium D-Lactate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium D-Lactate across organisms