Experiment set1IT077 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium D-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_02735 +2.6 22.9 chemotaxis protein CheY compare
AO353_21830 +2.5 22.1 chemotaxis protein CheY compare
AO353_19340 +1.8 16.5 amino acid ABC transporter substrate-binding protein compare
AO353_11155 +1.3 12.0 thioesterase compare
AO353_20925 +1.2 2.2 hypothetical protein compare
AO353_11160 +1.1 7.5 GntR family transcriptional regulator compare
AO353_05695 +1.0 8.5 transcriptional regulator PdhR compare
AO353_08465 +1.0 8.6 phosphoenolpyruvate-protein phosphotransferase compare
AO353_19335 +0.9 6.2 TetR family transcriptional regulator compare
AO353_13300 +0.8 1.6 LOG family protein compare
AO353_23910 +0.8 3.3 response regulator compare
AO353_01725 +0.8 2.9 phosphohistidine phosphatase compare
AO353_04065 +0.8 2.1 electron transporter RnfB compare
AO353_16615 +0.8 6.7 RNA polymerase sigma factor RpoS compare
AO353_13660 +0.8 5.3 tRNA-dihydrouridine synthase B compare
AO353_23785 +0.8 1.7 hypothetical protein compare
AO353_00355 +0.7 2.7 transcriptional regulator compare
AO353_16345 +0.7 2.2 energy transducer TonB compare
AO353_27905 +0.7 2.8 N-formylglutamate amidohydrolase compare
AO353_11190 +0.7 6.2 ABC transporter compare
AO353_18325 +0.7 1.7 hypothetical protein compare
AO353_12720 +0.7 2.3 hypothetical protein compare
AO353_16745 +0.7 1.5 ArsR family transcriptional regulator compare
AO353_11940 +0.7 2.3 hypothetical protein compare
AO353_17085 +0.6 1.7 hypothetical protein compare
AO353_07105 +0.6 1.4 biotin--protein ligase compare
AO353_13095 +0.6 2.5 flagellar motor protein MotB compare
AO353_01055 +0.6 5.2 AraC family transcriptional regulator compare
AO353_27890 +0.6 2.9 RpiR family transcriptional regulator compare
AO353_09250 +0.6 2.1 exodeoxyribonuclease III compare
AO353_11195 +0.6 5.3 hemolysin secretion protein D compare
AO353_11185 +0.6 5.1 channel protein TolC compare
AO353_19025 +0.6 4.7 acetyltransferase compare
AO353_12930 +0.6 2.4 GlcNAc-PI de-N-acetylase compare
AO353_28815 +0.6 2.0 hypothetical protein compare
AO353_03660 +0.6 2.6 hypothetical protein compare
AO353_21895 +0.6 1.8 molybdenum cofactor biosynthesis protein MoaD compare
AO353_02995 +0.6 3.6 succinylglutamate desuccinylase compare
AO353_01065 +0.6 3.8 acetyl-CoA acetyltransferase compare
AO353_29365 +0.5 1.7 paraquat-inducible protein A compare
AO353_19760 +0.5 1.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_26180 +0.5 1.9 phage tail protein compare
AO353_21400 +0.5 1.6 conjugal transfer protein TraR compare
AO353_23425 +0.5 1.9 3-demethylubiquinone-9 3-methyltransferase compare
AO353_27155 +0.5 1.3 hypothetical protein compare
AO353_09560 +0.5 0.7 type VI secretion protein compare
AO353_04090 +0.5 1.5 leucyl-tRNA synthetase compare
AO353_19040 +0.5 3.3 thioredoxin compare
AO353_00115 +0.5 1.7 hypothetical protein compare
AO353_24600 +0.5 1.8 hypothetical protein compare
AO353_24915 +0.5 1.3 hypothetical protein compare
AO353_12710 +0.5 1.3 thioredoxin compare
AO353_01060 +0.5 3.3 3-ketoacyl-ACP reductase compare
AO353_01185 +0.5 2.9 superfamily II DNA/RNA helicase, SNF2 family protein compare
AO353_04325 +0.5 1.1 hypothetical protein compare
AO353_26390 +0.5 1.4 glyoxalase compare
AO353_17940 +0.5 1.4 hypothetical protein compare
AO353_19605 +0.5 0.9 hypothetical protein compare
AO353_18660 +0.5 3.4 AAA family ATPase compare
AO353_00810 +0.5 1.2 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_02660 +0.5 1.9 peptidase P60 compare
AO353_21540 +0.5 1.9 type VI secretion protein compare
AO353_01070 +0.5 4.2 poly(R)-hydroxyalkanoic acid synthase compare
AO353_25925 +0.5 1.4 hypothetical protein compare
AO353_17525 +0.5 1.9 tRNA-Gly compare
AO353_20815 +0.5 1.7 LacI family transcriptional regulator compare
AO353_27710 +0.5 0.8 DNA repair protein compare
AO353_13580 +0.4 1.9 copper resistance protein CopZ compare
AO353_13800 +0.4 1.6 hypothetical protein compare
AO353_25785 +0.4 2.0 adhesin compare
AO353_12835 +0.4 1.6 hypothetical protein compare
AO353_25815 +0.4 1.6 hypothetical protein compare
AO353_28150 +0.4 1.9 arginine aminotransferase compare
AO353_11180 +0.4 4.1 large adhesive protein compare
AO353_26840 +0.4 1.4 RND transporter compare
AO353_01905 +0.4 2.2 TetR family transcriptional regulator compare
AO353_17515 +0.4 1.7 short-chain dehydrogenase compare
AO353_06725 +0.4 1.1 hypothetical protein compare
AO353_20680 +0.4 1.9 cell division protein compare
AO353_00195 +0.4 1.3 virion morphogenesis protein compare
AO353_15580 +0.4 2.1 2-oxoisovalerate dehydrogenase compare
AO353_09915 +0.4 2.8 long-chain acyl-CoA thioester hydrolase compare
AO353_22305 +0.4 1.3 LysR family transcriptional regulator compare
AO353_18500 +0.4 1.1 chemotaxis protein CheY compare
AO353_25475 +0.4 1.9 multidrug resistance protein compare
AO353_28640 +0.4 1.8 hypothetical protein compare
AO353_09720 +0.4 0.7 hypothetical protein compare
AO353_08875 +0.4 0.7 amino acid ABC transporter ATP-binding protein compare
AO353_17130 +0.4 2.6 hypothetical protein compare
AO353_14030 +0.4 3.4 ABC transporter ATP-binding protein compare
AO353_28165 +0.4 1.8 ABC transporter substrate-binding protein compare
AO353_19545 +0.4 2.2 aldehyde-activating protein compare
AO353_25665 +0.4 2.0 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
AO353_08425 +0.4 2.3 Cd(II)/Pb(II)-responsive transcriptional regulator compare
AO353_17520 +0.4 1.4 hypothetical protein compare
AO353_12570 +0.4 1.4 type II secretion system protein GspI compare
AO353_24970 +0.4 1.9 formate dehydrogenase compare
AO353_05990 +0.4 2.5 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) compare
AO353_10990 +0.4 2.8 glutamate:protein symporter compare
AO353_05195 +0.4 2.7 glmZ(sRNA)-inactivating NTPase compare
AO353_23400 +0.4 0.9 hypothetical protein compare
AO353_17535 +0.4 2.5 16S rRNA pseudouridine(516) synthase compare
AO353_20120 +0.4 1.6 hypothetical protein compare
AO353_16380 +0.4 1.6 hypothetical protein compare
AO353_22855 +0.4 1.4 hypothetical protein compare
AO353_03100 +0.4 1.1 XRE family transcriptional regulator compare
AO353_16355 +0.4 1.6 TetR family transcriptional regulator compare
AO353_16070 +0.4 1.4 PadR family transcriptional regulator compare
AO353_19295 +0.4 1.2 hypothetical protein compare
AO353_12915 +0.4 2.3 carbamoyltransferase compare
AO353_24515 +0.4 2.5 MFS transporter permease compare
AO353_24440 +0.4 1.0 reactive intermediate/imine deaminase compare
AO353_05620 +0.4 1.8 MFS transporter compare
AO353_17270 +0.4 1.9 hypothetical protein compare
AO353_11710 +0.4 1.9 taurine dioxygenase compare
AO353_04970 +0.4 1.3 cell division protein DedD compare
AO353_09745 +0.4 0.7 hypothetical protein compare
AO353_25860 +0.4 2.0 peptide ABC transporter compare
AO353_01770 +0.4 1.6 pirin compare
AO353_12015 +0.4 1.0 antitoxin compare
AO353_07460 +0.4 1.0 DNA-binding protein compare
AO353_17365 +0.4 1.0 hypothetical protein compare
AO353_02860 +0.4 1.7 flagellar biosynthesis protein FlgB compare
AO353_03125 +0.4 1.9 LysR family transcriptional regulator compare
AO353_20530 +0.4 1.7 hypothetical protein compare
AO353_26115 +0.4 0.7 hypothetical protein compare
AO353_18600 +0.4 1.7 flagellar basal-body rod protein FlgG compare
AO353_24820 +0.4 2.1 histidine kinase compare
AO353_12455 +0.4 1.4 nuclease compare
AO353_24335 +0.4 1.7 L-asparagine permease compare
AO353_08855 +0.4 1.2 GntR family transcriptional regulator compare
AO353_14590 +0.4 0.8 serine kinase/phosphatase compare
AO353_18270 +0.4 1.6 peptidylprolyl isomerase compare
AO353_17840 +0.4 1.8 transcriptional regulator compare
AO353_21095 +0.4 1.9 glutamine cyclotransferase compare
AO353_20255 +0.4 1.6 transcriptional regulator compare
AO353_08615 +0.3 1.6 hypothetical protein compare
AO353_24495 +0.3 2.4 malate permease compare
AO353_03805 +0.3 1.4 C4-dicarboxylate ABC transporter compare
AO353_21010 +0.3 1.7 transposase compare
AO353_22830 +0.3 1.7 cupin compare
AO353_14585 +0.3 1.6 ribosomal-protein-alanine acetyltransferase compare
AO353_08030 +0.3 2.6 DEAD/DEAH box helicase compare
AO353_26085 +0.3 2.0 hypothetical protein compare
AO353_17985 +0.3 1.3 LysR family transcriptional regulator compare
AO353_02875 +0.3 2.4 flagellar biosynthesis protein FlgA compare
AO353_21945 +0.3 1.2 protein nirL compare
AO353_06345 +0.3 3.2 histidine kinase compare
AO353_19280 +0.3 1.0 hypothetical protein compare
AO353_04005 +0.3 1.7 hypothetical protein compare
AO353_25610 +0.3 1.8 polysaccharide deacetylase compare
AO353_08215 +0.3 1.2 thiazole synthase compare
AO353_27220 +0.3 1.3 hypothetical protein compare
AO353_20380 +0.3 2.5 acyl-CoA dehydrogenase compare
AO353_25485 +0.3 1.8 XRE family transcriptional regulator compare
AO353_02255 +0.3 1.9 alpha/beta hydrolase compare
AO353_14915 +0.3 1.1 (2Fe-2S)-binding protein compare
AO353_01980 +0.3 2.7 NAD-dependent dehydratase compare
AO353_14620 +0.3 2.6 MFS transporter compare
AO353_01965 +0.3 1.6 competence protein ComEA compare
AO353_18790 +0.3 1.2 histidine kinase compare
AO353_12665 +0.3 0.8 glycosyl transferase compare
AO353_18320 +0.3 1.8 hypothetical protein compare
AO353_24985 +0.3 1.3 L-seryl-tRNA(Sec) selenium transferase compare
AO353_02540 +0.3 1.9 cupin compare
AO353_27900 +0.3 1.7 glutamine synthetase compare
AO353_26550 +0.3 0.7 hypothetical protein compare
AO353_03655 +0.3 1.5 cobalamin adenosyltransferase compare
AO353_25500 +0.3 1.9 phosphoglycerate mutase compare
AO353_09275 +0.3 1.2 DNA-directed RNA polymerase subunit omega compare
AO353_12950 +0.3 2.2 polymerase compare
AO353_11780 +0.3 1.1 hypothetical protein compare
AO353_23855 +0.3 2.0 hypothetical protein compare
AO353_11145 +0.3 1.9 aminobenzoate oxygenase compare
AO353_07770 +0.3 1.7 AraC family transcriptional regulator compare
AO353_22585 +0.3 2.1 HxlR family transcriptional regulator compare
AO353_27935 +0.3 1.3 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_10255 +0.3 2.5 ABC transporter compare
AO353_28000 +0.3 1.6 branched-chain amino acid ABC transporter compare
AO353_26790 +0.3 2.2 Glutaminase (EC 3.5.1.2) (from data) compare
AO353_02425 +0.3 1.8 spermidine/putrescine ABC transporter ATP-binding protein compare
AO353_14225 +0.3 2.3 laccase compare
AO353_11170 +0.3 2.4 hypothetical protein compare
AO353_17570 +0.3 2.1 tripartite tricarboxylate transporter TctA compare
AO353_00905 +0.3 1.4 GntR family transcriptional regulator compare
AO353_15280 +0.3 1.5 hypothetical protein compare
AO353_14300 +0.3 2.1 hypothetical protein compare
AO353_14910 +0.3 1.5 pyridine nucleotide-disulfide oxidoreductase compare
AO353_22235 +0.3 1.9 AraC family transcriptional regulator compare
AO353_28850 +0.3 2.1 LysR family transcriptional regulator compare
AO353_19890 +0.3 1.7 cell division protein FtsH compare
AO353_24810 +0.3 1.6 transcriptional regulator compare
AO353_27955 +0.3 1.7 tyrosyl-trna synthetase compare
AO353_27660 +0.3 1.0 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_12680 +0.3 1.6 hypothetical protein compare
AO353_20605 +0.3 1.7 heat-shock protein compare
AO353_11325 +0.3 2.0 serine protease compare
AO353_22675 +0.3 1.4 hypothetical protein compare
AO353_13985 +0.3 1.1 pilus assembly protein compare
AO353_02580 +0.3 2.8 Long-chain fatty acid transport protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Sodium D-Lactate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium D-Lactate across organisms