Experiment set1IT077 for Acidovorax sp. GW101-3H11

Compare to:

D-Fructose carbon source

200 most detrimental genes:

  gene name fitness t score description  
Ac3H11_3321 +1.4 2.5 hypothetical protein compare
Ac3H11_2583 +1.2 2.0 Na(+) H(+) antiporter subunit C compare
Ac3H11_351 +1.1 1.7 hypothetical protein compare
Ac3H11_4916 +1.1 1.1 Transcriptional regulator, ArsR family compare
Ac3H11_3270 +1.1 1.2 Putative translation initiation inhibitor, yjgF family compare
Ac3H11_4142 +1.0 1.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Ac3H11_1325 +1.0 1.9 Mg2+ and Co2+ transporters compare
Ac3H11_1205 +1.0 3.9 Two-component response regulator compare
Ac3H11_2509 +0.9 2.7 Response regulator compare
Ac3H11_176 +0.9 1.8 Transcriptional regulator, MarR family compare
Ac3H11_3693 +0.9 1.1 Urease gamma subunit (EC 3.5.1.5) compare
Ac3H11_2302 +0.9 1.3 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Ac3H11_3590 +0.9 1.4 Carbon monoxide dehydrogenase small chain (EC 1.2.99.2) compare
Ac3H11_4619 +0.9 1.0 Tn21 protein of unknown function Urf2 compare
Ac3H11_1027 +0.9 1.2 FIG01198047: hypothetical protein compare
Ac3H11_1326 +0.8 1.2 Plasmid replication/partition related protein compare
Ac3H11_2191 +0.8 1.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Ac3H11_3496 +0.8 1.2 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) compare
Ac3H11_1904 +0.8 1.0 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) compare
Ac3H11_1473 +0.8 1.9 hypothetical protein compare
Ac3H11_2891 +0.8 1.1 hypothetical protein compare
Ac3H11_4310 +0.8 1.2 FIG00458971: hypothetical protein compare
Ac3H11_2551 +0.8 1.2 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Ac3H11_3238 +0.8 1.0 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Ac3H11_1346 +0.7 1.4 Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase compare
Ac3H11_4567 +0.7 2.9 hypothetical protein compare
Ac3H11_3810 +0.7 1.3 Transcriptional regulator, TetR family compare
Ac3H11_1660 +0.7 1.1 ATP-dependent DNA helicase UvrD/PcrA compare
Ac3H11_2876 +0.7 2.3 hypothetical protein compare
Ac3H11_186 +0.7 1.5 hypothetical protein compare
Ac3H11_3068 +0.7 2.5 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Ac3H11_4194 +0.7 1.1 DNA polymerase-like protein PA0670 compare
Ac3H11_3759 +0.7 2.7 hypothetical protein compare
Ac3H11_397 +0.7 1.1 Copper tolerance protein compare
Ac3H11_4137 +0.6 2.4 Probable chromate transporter protein compare
Ac3H11_3647 +0.6 1.4 Serine acetyltransferase (EC 2.3.1.30) compare
Ac3H11_4185 +0.6 1.2 hypothetical protein compare
Ac3H11_4083 +0.6 2.0 GDP-mannose pyrophosphatase YffH compare
Ac3H11_1272 +0.6 1.5 hypothetical protein compare
Ac3H11_1206 +0.6 4.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Ac3H11_4139 +0.6 1.8 extracellular ligand-binding receptor compare
Ac3H11_2897 +0.6 0.9 Small uncharacterized protein Bpro_4170 compare
Ac3H11_2805 +0.6 1.7 IncF plasmid conjugative transfer pilus assembly protein TraK compare
Ac3H11_2198 +0.6 1.6 hypothetical protein compare
Ac3H11_3124 +0.6 2.1 hypothetical protein compare
Ac3H11_3595 +0.6 2.6 carbon monoxide dehydrogenase G protein compare
Ac3H11_942 +0.6 1.7 hypothetical protein compare
Ac3H11_2181 +0.6 1.4 Alkylated DNA repair protein AlkB compare
Ac3H11_3269 +0.6 1.5 Putative translation initiation inhibitor, yjgF family compare
Ac3H11_432 +0.6 1.9 Ribonuclease HII (EC 3.1.26.4) compare
Ac3H11_3577 +0.6 0.8 hypothetical protein compare
Ac3H11_1770 +0.6 1.2 Threonine dehydratase (EC 4.3.1.19) compare
Ac3H11_1771 +0.6 1.0 tRNA nucleotidyltransferase, A-adding (EC 2.7.7.25) compare
Ac3H11_3573 +0.5 1.6 ABC-type tungstate transport system, periplasmic binding protein compare
Ac3H11_3065 +0.5 1.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ac3H11_3944 +0.5 1.4 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Ac3H11_4033 +0.5 1.4 FIG00933378: hypothetical protein compare
Ac3H11_4527 +0.5 1.7 Transcriptional regulator, LysR family compare
Ac3H11_4678 +0.5 1.8 membrane protein, putative compare
Ac3H11_2738 +0.5 1.8 Glutathione peroxidase family protein compare
Ac3H11_1857 +0.5 1.9 Magnesium and cobalt efflux protein CorC compare
Ac3H11_3411 +0.5 2.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Ac3H11_747 +0.5 1.7 RNA polymerase signa E (sigma 24) compare
Ac3H11_1388 +0.5 4.5 Flagellar motor rotation protein MotB compare
Ac3H11_2900 +0.5 1.6 alcohol dehydrogenase, zinc containing compare
Ac3H11_4180 +0.5 2.3 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Ac3H11_4214 +0.5 2.1 Copper tolerance protein compare
Ac3H11_4568 +0.5 3.0 Heavy metal RND efflux outer membrane protein, CzcC family compare
Ac3H11_1478 +0.5 1.8 FIG00537874: hypothetical protein compare
Ac3H11_4817 +0.5 2.3 hypothetical protein compare
Ac3H11_3172 +0.5 1.4 hypothetical protein compare
Ac3H11_3029 +0.5 1.5 Ferredoxin compare
Ac3H11_2566 +0.5 2.0 hypothetical protein compare
Ac3H11_2250 +0.5 1.3 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
Ac3H11_3634 +0.5 3.2 Signaling protein with a acyltransferase and GGDEF domains compare
Ac3H11_220 +0.5 1.6 hypothetical protein compare
Ac3H11_632 +0.5 1.6 Methionine ABC transporter permease protein compare
Ac3H11_4396 +0.5 2.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Ac3H11_184 +0.5 1.2 hypothetical protein compare
Ac3H11_4905 +0.5 1.3 hypothetical protein compare
Ac3H11_4017 +0.5 2.0 fragment of conserved hypothetical protein compare
Ac3H11_3469 +0.5 1.7 hypothetical protein compare
Ac3H11_700 +0.5 1.9 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) compare
Ac3H11_2199 +0.5 2.1 hypothetical protein compare
Ac3H11_3388 +0.5 2.0 GCN5-related N-acetyltransferase compare
Ac3H11_229 +0.5 1.8 Hemin transport protein HmuS compare
Ac3H11_1567 +0.5 0.9 Probable transmembrane protein compare
Ac3H11_759 +0.5 1.4 two-component system response regulator (Pho family) compare
Ac3H11_3422 +0.5 1.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Ac3H11_865 +0.5 0.9 hypothetical protein compare
Ac3H11_4836 +0.5 2.1 Threonine dehydratase (EC 4.3.1.19) compare
Ac3H11_4122 +0.5 1.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Ac3H11_2340 +0.5 0.8 hypothetical protein compare
Ac3H11_4897 +0.5 2.1 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Ac3H11_2798 +0.5 1.9 hypothetical protein compare
Ac3H11_1351 +0.5 1.9 hypothetical protein compare
Ac3H11_1157 +0.5 2.5 Kynureninase (EC 3.7.1.3) compare
Ac3H11_414 +0.5 1.8 Transcriptional regulator, AraC family compare
Ac3H11_1498 +0.5 1.9 Short-chain dehydrogenase/reductase SDR compare
Ac3H11_4533 +0.4 1.3 hypothetical protein compare
Ac3H11_1389 +0.4 3.0 Flagellar motor rotation protein MotA compare
Ac3H11_773 +0.4 1.9 Uracil-DNA glycosylase, family 1 compare
Ac3H11_1208 +0.4 3.8 FIG005080: Possible exported protein compare
Ac3H11_1007 +0.4 1.4 Hydantoin racemase (EC 5.1.99.-) compare
Ac3H11_1275 +0.4 0.5 hypothetical protein compare
Ac3H11_622 +0.4 2.3 Transcriptional regulator, LysR family compare
Ac3H11_3021 +0.4 0.6 2-hydroxychromene-2-carboxylate isomerase compare
Ac3H11_5 +0.4 0.9 putative inner membrane protein compare
Ac3H11_535 +0.4 1.4 Hypothetical protein DUF454 compare
Ac3H11_112 +0.4 2.0 Tricarboxylate transport protein TctC compare
Ac3H11_4125 +0.4 1.8 FIG000605: protein co-occurring with transport systems (COG1739) compare
Ac3H11_2882 +0.4 1.9 FIG01198523: hypothetical protein compare
Ac3H11_92 +0.4 1.8 hypothetical protein compare
Ac3H11_3430 +0.4 1.2 ABC-type branched-chain amino acid transport systems, ATPase component compare
Ac3H11_3709 +0.4 2.5 Probable DNA repair exonuclease compare
Ac3H11_2888 +0.4 1.5 Transcriptional regulator, LysR family compare
Ac3H11_1752 +0.4 0.8 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare
Ac3H11_3718 +0.4 0.9 hypothetical protein compare
Ac3H11_84 +0.4 2.2 putative permease component of ABC transporter compare
Ac3H11_3490 +0.4 1.8 hypothetical protein compare
Ac3H11_262 +0.4 1.6 hypothetical protein compare
Ac3H11_1174 +0.4 0.9 Transcriptional regulator, GntR family compare
Ac3H11_636 +0.4 1.3 Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme compare
Ac3H11_1667 +0.4 3.7 Cellulose synthase operon protein C compare
Ac3H11_4945 +0.4 1.8 hypothetical protein compare
Ac3H11_4427 +0.4 2.6 Probable transmembrane protein compare
Ac3H11_1376 +0.4 2.6 Flagellar basal-body rod protein FlgC compare
Ac3H11_1335 +0.4 1.1 hypothetical protein compare
Ac3H11_656 +0.4 1.6 Two-component system response regulator QseB compare
Ac3H11_4151 +0.4 1.0 Flagellar synthesis regulator FleN compare
Ac3H11_604 +0.4 1.2 L-arabonate dehydratase (EC 4.2.1.25) compare
Ac3H11_765 +0.4 2.0 FIG026291: Hypothetical periplasmic protein compare
Ac3H11_4437 +0.4 3.0 GCN5-related N-acetyltransferase compare
Ac3H11_283 +0.4 1.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Ac3H11_2185 +0.4 1.3 hypothetical secreted protein compare
Ac3H11_1672 +0.4 3.5 FIG002337: predicted inner membrane protein compare
Ac3H11_1802 +0.4 2.8 HflC protein compare
Ac3H11_1953 +0.4 0.9 Transcriptional regulator compare
Ac3H11_2718 +0.4 1.0 Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) compare
Ac3H11_2597 +0.4 2.0 putative inner membrane efflux protein compare
Ac3H11_4161 +0.4 2.3 COG3380: Amine oxidase, flavin-containing compare
Ac3H11_542 +0.4 0.9 Lysine exporter protein (LYSE/YGGA) compare
Ac3H11_995 +0.4 1.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Ac3H11_2651 +0.4 1.5 hypothetical protein compare
Ac3H11_3841 +0.4 1.2 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Ac3H11_2410 +0.4 1.6 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Ac3H11_1372 +0.4 1.0 Flagellar basal-body rod protein FlgG compare
Ac3H11_196 +0.4 1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Ac3H11_1370 +0.4 0.8 hypothetical protein compare
Ac3H11_1506 +0.4 1.1 hypothetical protein compare
Ac3H11_1671 +0.4 3.5 Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12) compare
Ac3H11_1484 +0.4 0.5 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10) compare
Ac3H11_4672 +0.4 0.7 Ankyrin compare
Ac3H11_3052 +0.4 0.8 FIG00761799: membrane protein compare
Ac3H11_784 +0.4 0.9 Hydrogen peroxide-inducible genes activator compare
Ac3H11_2207 +0.4 1.8 Chromate resistance protein ChrB compare
Ac3H11_2264 +0.4 1.3 Transcriptional regulator, ArsR family compare
Ac3H11_1625 +0.4 2.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Ac3H11_783 +0.4 1.6 hypothetical protein compare
Ac3H11_3224 +0.4 1.0 hypothetical protein compare
Ac3H11_1323 +0.4 1.1 Transcriptional regulator, AraC family compare
Ac3H11_4526 +0.4 1.8 4-oxalocrotonate tautomerase compare
Ac3H11_4195 +0.4 2.1 RecA/RadA recombinase compare
Ac3H11_2556 +0.4 1.3 Transcriptional regulator, IclR family compare
Ac3H11_3749 +0.4 0.9 hypothetical protein compare
Ac3H11_4307 +0.4 1.4 Major membrane protein I compare
Ac3H11_3352 +0.4 1.6 IroE protein compare
Ac3H11_3246 +0.4 0.8 hypothetical protein compare
Ac3H11_2399 +0.4 0.7 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Ac3H11_3499 +0.4 0.7 hypothetical protein compare
Ac3H11_1455 +0.4 1.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Ac3H11_1300 +0.4 0.7 hypothetical protein compare
Ac3H11_2427 +0.4 2.0 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Ac3H11_1665 +0.4 3.1 Cyclic di-GMP binding protein precursor compare
Ac3H11_449 +0.4 1.8 Putative hemolysin compare
Ac3H11_1089 +0.4 1.2 hypothetical protein compare
Ac3H11_211 +0.4 1.5 putative exported protein compare
Ac3H11_2412 +0.4 1.1 hypothetical protein compare
Ac3H11_2472 +0.4 1.4 Antitoxin 1 compare
Ac3H11_2754 +0.4 1.8 Biphenyl dioxygenase beta subunit (EC 1.14.12.18) compare
Ac3H11_4163 +0.4 1.7 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Ac3H11_3653 +0.4 0.9 hypothetical protein compare
Ac3H11_4435 +0.4 2.3 Probable transmembrane protein compare
Ac3H11_2067 +0.4 1.1 Glucokinase (EC 2.7.1.2) compare
Ac3H11_213 +0.4 1.2 Fumarylacetoacetate hydrolase family protein compare
Ac3H11_102 +0.4 1.9 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Ac3H11_2424 +0.4 1.5 ATPase component BioM of energizing module of biotin ECF transporter compare
Ac3H11_126 +0.4 1.8 Mobile element protein compare
Ac3H11_4725 +0.4 0.5 hypothetical protein compare
Ac3H11_3070 +0.4 1.8 hypothetical protein compare
Ac3H11_2178 +0.4 1.3 Two-component system response regulator QseB compare
Ac3H11_1265 +0.4 0.9 FIG00931207: hypothetical protein compare
Ac3H11_3237 +0.3 1.1 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Ac3H11_2801 +0.3 0.4 FIG003465: Conjugative transfer outer membrane protein compare
Ac3H11_336 +0.3 1.2 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) compare
Ac3H11_507 +0.3 2.3 Thymidine phosphorylase (EC 2.4.2.4) compare
Ac3H11_335 +0.3 1.0 Transcriptional regulator, LacI family compare
Ac3H11_4105 +0.3 2.1 Deacetylases, including yeast histone deacetylase and acetoin utilization protein compare
Ac3H11_4664 +0.3 1.2 Cyanate hydratase (EC 4.2.1.104) compare
Ac3H11_635 +0.3 1.1 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Fructose in Acidovorax sp. GW101-3H11

For carbon source D-Fructose across organisms