Experiment set1IT077 for Rahnella sp. WP5

Compare to:

L-Glutamine nitrogen source; RCH2 media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS15020 -6.3 -14.2 ketol-acid reductoisomerase compare
EX31_RS03695 -6.1 -5.9 3-isopropylmalate dehydratase small subunit compare
EX31_RS14205 -6.0 -12.9 methylenetetrahydrofolate reductase compare
EX31_RS14190 -6.0 -13.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS12400 -6.0 -4.1 RNA polymerase factor sigma-54 compare
EX31_RS14215 -5.9 -18.7 cystathionine gamma-synthase compare
EX31_RS12825 -5.8 -5.6 ornithine carbamoyltransferase compare
EX31_RS14500 -5.8 -11.8 orotate phosphoribosyltransferase compare
EX31_RS03935 -5.8 -7.9 threonine synthase compare
EX31_RS02530 -5.7 -3.9 ABC transporter ATP-binding protein compare
EX31_RS13445 -5.6 -14.1 argininosuccinate synthase compare
EX31_RS02690 -5.6 -3.9 pyrroline-5-carboxylate reductase compare
EX31_RS22625 -5.6 -3.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS03690 -5.6 -9.3 3-isopropylmalate dehydratase large subunit compare
EX31_RS03830 -5.6 -16.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS12785 -5.5 -12.9 aspartate carbamoyltransferase compare
EX31_RS15005 -5.5 -18.0 dihydroxy-acid dehydratase compare
EX31_RS04035 -5.5 -13.3 phosphoserine phosphatase compare
EX31_RS03685 -5.4 -13.9 3-isopropylmalate dehydrogenase compare
EX31_RS03940 -5.4 -12.0 homoserine kinase compare
EX31_RS14180 -5.3 -17.2 argininosuccinate lyase compare
EX31_RS20495 -5.3 -6.4 outer membrane protein assembly factor BamB compare
EX31_RS03835 -5.2 -8.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS21470 -5.2 -7.9 phosphoglycerate dehydrogenase compare
EX31_RS16860 -5.2 -20.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS11735 -5.2 -8.7 homoserine O-succinyltransferase compare
EX31_RS23245 -5.2 -15.6 asparagine synthase B compare
EX31_RS13275 -5.2 -13.3 diaminopimelate decarboxylase compare
EX31_RS03945 -5.1 -24.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS13160 -5.1 -13.6 amino-acid N-acetyltransferase compare
EX31_RS14185 -5.1 -9.7 acetylglutamate kinase compare
EX31_RS12510 -5.0 -19.5 FAD-dependent oxidoreductase compare
EX31_RS20980 -5.0 -8.3 glutamate 5-kinase compare
EX31_RS16855 -4.9 -16.3 phosphoribosylamine--glycine ligase compare
EX31_RS22695 -4.9 -9.3 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11470 -4.8 -3.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS20975 -4.8 -8.0 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS09975 -4.8 -4.7 tryptophan synthase subunit beta compare
EX31_RS09970 -4.8 -5.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS21895 -4.8 -19.3 phosphoribosylformylglycinamidine synthase compare
EX31_RS02520 -4.7 -4.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS03775 -4.7 -4.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS12515 -4.7 -30.0 glutamate synthase large subunit compare
EX31_RS09855 -4.6 -4.4 orotidine-5'-phosphate decarboxylase compare
EX31_RS09965 -4.6 -5.4 anthranilate phosphoribosyltransferase compare
EX31_RS11440 -4.5 -6.2 histidinol dehydrogenase compare
EX31_RS18530 -4.5 -14.7 leucine-responsive transcriptional regulator Lrp compare
EX31_RS24385 -4.4 -3.0 dihydroorotase compare
EX31_RS02515 -4.3 -5.2 PAS domain-containing protein compare
EX31_RS20450 -4.3 -5.9 IMP dehydrogenase compare
EX31_RS11465 -4.3 -6.6 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS22750 -4.3 -5.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS07895 -4.3 -13.9 phosphoadenylyl-sulfate reductase compare
EX31_RS09890 -4.3 -11.3 HTH-type transcriptional regulator CysB compare
EX31_RS07585 -4.2 -11.3 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS07955 -4.2 -20.4 GTP diphosphokinase compare
EX31_RS11450 -4.2 -5.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS07870 -4.2 -11.5 adenylyl-sulfate kinase compare
EX31_RS11445 -4.2 -6.4 histidinol-phosphate transaminase compare
EX31_RS09960 -4.2 -4.1 glutamine amidotransferase compare
EX31_RS11460 -4.1 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS19570 -4.0 -15.2 amidophosphoribosyltransferase compare
EX31_RS09980 -3.9 -6.5 tryptophan synthase subunit alpha compare
EX31_RS19610 -3.9 -8.2 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS09955 -3.8 -7.7 anthranilate synthase component 1 compare
EX31_RS18095 -3.8 -6.4 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS20175 -3.8 -10.8 cysteine synthase A compare
EX31_RS11455 -3.8 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS03680 -3.7 -13.7 2-isopropylmalate synthase compare
EX31_RS07900 -3.7 -17.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS03250 -3.6 -12.0 RNA polymerase-binding protein DksA compare
EX31_RS07905 -3.6 -19.2 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS23440 -3.6 -2.5 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS14310 -3.6 -5.4 6-phosphofructokinase compare
EX31_RS15155 -3.5 -3.4 diaminopimelate epimerase compare
EX31_RS07590 -3.5 -2.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS22620 -3.5 -7.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS18540 -3.4 -4.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS14340 -3.3 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS18255 -3.2 -3.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS07880 -3.2 -18.0 sulfate adenylyltransferase subunit CysD compare
EX31_RS14335 -3.2 -2.2 serine O-acetyltransferase compare
EX31_RS21850 -3.2 -3.1 pyridoxine 5'-phosphate synthase compare
EX31_RS07595 -3.1 -10.3 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS04630 -3.1 -15.6 aspartate aminotransferase family protein compare
EX31_RS22250 -3.1 -6.7 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS23490 -3.0 -4.1 cell envelope integrity protein TolA compare
EX31_RS07875 -3.0 -18.4 sulfate adenylyltransferase subunit CysN compare
EX31_RS08720 -2.9 -15.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS23480 -2.9 -5.7 Tol-Pal system protein TolQ compare
EX31_RS05785 -2.8 -5.4 superoxide dismutase [Mn] compare
EX31_RS23495 -2.8 -8.6 Tol-Pal system protein TolB compare
EX31_RS20735 -2.8 -5.7 exodeoxyribonuclease V subunit beta compare
EX31_RS18525 -2.8 -4.2 DNA translocase FtsK compare
EX31_RS22245 -2.7 -5.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS21020 -2.7 -2.6 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS11525 -2.7 -2.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS07560 -2.6 -18.1 ATP-dependent chaperone ClpB compare
EX31_RS23500 -2.6 -5.7 peptidoglycan-associated lipoprotein Pal compare
EX31_RS10115 -2.6 -10.6 formyltetrahydrofolate deformylase compare
EX31_RS06070 -2.6 -10.2 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS15010 -2.5 -10.1 threonine ammonia-lyase, biosynthetic compare
EX31_RS20190 -2.5 -2.3 PTS glucose transporter subunit IIA compare
EX31_RS03645 -2.4 -3.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS23485 -2.4 -2.8 colicin uptake protein TolR compare
EX31_RS06680 -2.4 -2.2 cellulose biosynthesis protein BcsF compare
EX31_RS14200 -2.4 -12.4 phosphoenolpyruvate carboxylase compare
EX31_RS06055 -2.4 -4.7 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS06060 -2.3 -4.7 phosphate ABC transporter permease PstA compare
EX31_RS04105 -2.3 -3.1 helix-turn-helix domain-containing protein compare
EX31_RS04710 -2.3 -4.9 adenine-specific DNA-methyltransferase compare
EX31_RS06065 -2.3 -9.2 phosphate ABC transporter permease PstC compare
EX31_RS15870 -2.3 -5.7 glutamate--ammonia ligase compare
EX31_RS15875 -2.3 -11.9 nitrogen regulation protein NR(II) compare
EX31_RS06595 -2.2 -3.0 electron transport complex subunit E compare
EX31_RS12875 -2.2 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS22430 -2.2 -2.5 hemolysin expression modulator Hha compare
EX31_RS25370 -2.2 -11.3 HTH-type transcriptional regulator MetR compare
EX31_RS09560 -2.1 -3.8 flagella biosynthesis chaperone FliJ compare
EX31_RS08535 -2.1 -3.9 30S ribosome-binding factor RbfA compare
EX31_RS21400 -2.1 -6.2 transketolase compare
EX31_RS20925 -2.1 -2.8 hypothetical protein compare
EX31_RS15095 -2.1 -3.4 O-antigen assembly polymerase compare
EX31_RS11435 -2.1 -6.1 ATP phosphoribosyltransferase compare
EX31_RS08745 -2.0 -2.0 50S ribosomal protein L9 compare
EX31_RS16845 -2.0 -3.8 DNA-binding protein HU-alpha compare
EX31_RS25340 -2.0 -5.8 hypothetical protein compare
EX31_RS11815 -1.9 -10.5 glucose-6-phosphate isomerase compare
EX31_RS15880 -1.9 -8.7 nitrogen regulation protein NR(I) compare
EX31_RS13480 -1.9 -4.4 site-specific tyrosine recombinase XerD compare
EX31_RS03480 -1.8 -4.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS11280 -1.8 -3.7 flagellar basal body P-ring protein FlgI compare
EX31_RS11675 -1.8 -2.1 Holliday junction branch migration protein RuvA compare
EX31_RS07830 -1.8 -5.9 murein hydrolase activator NlpD compare
EX31_RS06150 -1.8 -13.1 transcriptional regulator AsnC compare
EX31_RS21805 -1.8 -2.9 anti-sigma-E factor RseA compare
EX31_RS08130 -1.8 -2.3 accessory factor UbiK family protein compare
EX31_RS22740 -1.7 -9.1 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS11540 -1.7 -4.1 dCTP deaminase compare
EX31_RS04725 -1.7 -4.8 shikimate kinase AroK compare
EX31_RS09550 -1.7 -2.2 flagellar assembly protein FliH compare
EX31_RS04390 -1.7 -2.7 DNA polymerase III subunit chi compare
EX31_RS02525 -1.7 -6.1 ABC transporter permease compare
EX31_RS26040 -1.6 -1.9 hypothetical protein compare
EX31_RS08140 -1.6 -2.8 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS20185 -1.6 -6.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS07380 -1.6 -2.3 redox-regulated ATPase YchF compare
EX31_RS09465 -1.6 -4.4 flagellar export chaperone FliS compare
EX31_RS25375 -1.5 -4.4 ilv operon leader peptide compare
EX31_RS09600 -1.5 -2.6 flagellar type III secretion system protein FliR compare
EX31_RS05145 -1.5 -7.3 inorganic phosphate transporter PitA compare
EX31_RS18040 -1.5 -9.3 porin OmpA compare
EX31_RS02385 -1.5 -1.5 hypothetical protein compare
EX31_RS19655 -1.5 -5.1 beta-ketoacyl-ACP synthase I compare
EX31_RS11300 -1.5 -6.3 flagellar hook protein FlgE compare
EX31_RS19485 -1.4 -5.9 phosphate acetyltransferase compare
EX31_RS03900 -1.4 -3.5 molecular chaperone DnaK compare
EX31_RS14990 -1.4 -8.2 acetolactate synthase 2 catalytic subunit compare
EX31_RS09540 -1.4 -5.5 flagellar basal body M-ring protein FliF compare
EX31_RS11425 -1.4 -5.2 flagellar transcriptional regulator FlhD compare
EX31_RS25105 -1.4 -1.3 DUF2474 domain-containing protein compare
EX31_RS14325 -1.4 -7.9 envelope stress sensor histidine kinase CpxA compare
EX31_RS18785 -1.4 -4.0 DUF2384 domain-containing protein compare
EX31_RS06140 -1.4 -8.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS09545 -1.4 -3.7 flagellar motor switch protein FliG compare
EX31_RS23315 -1.3 -5.1 replication initiation negative regulator SeqA compare
EX31_RS15910 -1.3 -7.0 thiol:disulfide interchange protein DsbA compare
EX31_RS19690 -1.3 -5.0 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
EX31_RS11285 -1.3 -4.3 flagellar basal body L-ring protein FlgH compare
EX31_RS13280 -1.3 -7.6 LysR family transcriptional regulator compare
EX31_RS13045 -1.3 -8.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS01760 -1.3 -4.4 hypothetical protein compare
EX31_RS08520 -1.3 -7.3 polyribonucleotide nucleotidyltransferase compare
EX31_RS09995 -1.3 -1.4 YkgJ family cysteine cluster protein compare
EX31_RS11310 -1.3 -5.1 flagellar basal body rod protein FlgC compare
EX31_RS07015 -1.3 -2.4 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS15015 -1.3 -3.5 HTH-type transcriptional activator IlvY compare
EX31_RS06000 -1.3 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS06620 -1.3 -3.0 electron transport complex subunit RsxA compare
EX31_RS23125 -1.3 -2.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS20530 -1.2 -5.1 nucleoside-diphosphate kinase compare
EX31_RS01530 -1.2 -1.6 hypothetical protein compare
EX31_RS17290 -1.2 -3.5 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS11420 -1.2 -4.8 flagellar transcriptional regulator FlhC compare
EX31_RS17615 -1.2 -2.0 hypothetical protein compare
EX31_RS11340 -1.2 -5.1 flagellar biosynthesis protein FlhA compare
EX31_RS26075 -1.2 -1.4 hypothetical protein compare
EX31_RS06020 -1.2 -8.0 hypothetical protein compare
EX31_RS12175 -1.2 -3.2 DNA-binding transcriptional regulator Fis compare
EX31_RS11295 -1.2 -4.4 flagellar basal body rod protein FlgF compare
EX31_RS00920 -1.1 -1.9 DUF1493 family protein compare
EX31_RS14620 -1.1 -2.1 SCP2 domain-containing protein compare
EX31_RS09450 -1.1 -5.8 RNA polymerase sigma factor FliA compare
EX31_RS07785 -1.1 -1.1 carbon storage regulator CsrA compare
EX31_RS10515 -1.1 -3.2 disulfide bond formation protein DsbB compare
EX31_RS11315 -1.1 -1.5 flagellar basal body rod protein FlgB compare
EX31_RS01090 -1.1 -2.5 metal ABC transporter permease compare
EX31_RS21190 -1.1 -2.7 ribonuclease HI compare
EX31_RS06600 -1.1 -2.7 electron transport complex subunit RsxG compare
EX31_RS06405 -1.1 -1.7 SDR family oxidoreductase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Glutamine in Rahnella sp. WP5

For nitrogen source L-Glutamine across organisms