Experiment set1IT077 for Pedobacter sp. GW460-11-11-14-LB5
R2A with Carbenicillin disodium salt 0.2 mg/ml
Group: stressMedia: R2A + Carbenicillin disodium salt (0.2 mg/ml)
Culturing: Pedo557_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.2 generations
By: Adam on 17-May-17
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 1751 C1
Specific Phenotypes
For 18 genes in this experiment
For stress Carbenicillin disodium salt in Pedobacter sp. GW460-11-11-14-LB5
For stress Carbenicillin disodium salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| muropeptide degradation | 4 | 1 | 1 |
| peptidoglycan recycling II | 10 | 3 | 2 |
| protein O-mannosylation III (mammals, core M3) | 5 | 1 | 1 |
| protein O-mannosylation II (mammals, core M1 and core M2) | 5 | 1 | 1 |
| peptidoglycan recycling I | 14 | 8 | 2 |
| protein O-mannosylation I (yeast) | 8 | 1 | 1 |
| protein N-glycosylation (Haloferax volcanii) | 11 | 1 | 1 |
| peptidoglycan maturation (meso-diaminopimelate containing) | 12 | 4 | 1 |
| type I lipoteichoic acid biosynthesis (S. aureus) | 17 | 5 | 1 |
| protein N-glycosylation initial phase (eukaryotic) | 19 | 1 | 1 |