Experiment set1IT077 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 20 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS05515 -11.5 -3.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01985 -10.9 -3.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS02100 -10.9 -2.2 metallophosphoesterase compare
MMP_RS06680 -10.8 -6.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05450 -10.8 -2.5 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS05290 -10.6 -4.9 TetR/AcrR family transcriptional regulator compare
MMP_RS06350 -10.6 -3.2 HesA/MoeB/ThiF family protein compare
MMP_RS06345 -10.5 -5.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS00120 -10.5 -3.0 LysR family transcriptional regulator compare
MMP_RS03015 -10.4 -4.8 GTP 3' 8-cyclase MoaA compare
MMP_RS05635 -10.4 -4.5 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS05285 -10.4 -4.3 MMPL family transporter compare
MMP_RS06700 -10.3 -6.0 hypothetical protein compare
MMP_RS08840 -10.3 -5.0 class I SAM-dependent methyltransferase compare
MMP_RS01975 -10.2 -7.1 hypothetical protein compare
MMP_RS01175 -10.2 -2.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06685 -10.2 -6.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06355 -10.0 -2.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06175 -10.0 -3.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS05280 -9.9 -5.4 COG1361 S-layer family protein compare
MMP_RS02355 -9.9 -2.0 30S ribosomal protein S27ae compare
MMP_RS01265 -9.8 -2.3 hypothetical protein compare
MMP_RS02875 -9.7 -4.3 chorismate pyruvate-lyase family protein compare
MMP_RS06215 -9.7 -1.9 30S ribosomal protein S6e compare
MMP_RS07445 -9.6 -4.3 helix-turn-helix domain-containing protein compare
MMP_RS06980 -9.6 -4.0 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS08605 -9.6 -3.1 flagellar protein E compare
MMP_RS08590 -9.5 -2.9 flagellin compare
MMP_RS07710 -9.4 -4.2 cell division protein FtsZ compare
MMP_RS01500 -9.3 -1.9 CBS domain-containing protein compare
MMP_RS08195 -9.1 -5.1 hypothetical protein compare
MMP_RS07635 -9.1 -4.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01220 -9.0 -4.2 hypothetical protein compare
MMP_RS07820 -9.0 -2.7 UPF0104 family protein compare
MMP_RS07875 -9.0 -3.3 hypothetical protein compare
MMP_RS00915 -8.9 -3.8 DUF116 domain-containing protein compare
MMP_RS02135 -8.9 -2.9 DUF5612 domain-containing protein compare
MMP_RS04875 -8.9 -2.9 energy-converting hydrogenase B subunit P compare
MMP_RS06105 -8.9 -4.3 hydrogenase maturation peptidase HycI compare
MMP_RS01885 -8.8 -4.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS01875 -8.8 -6.0 N-acetyltransferase compare
MMP_RS05525 -8.7 -3.5 calcium/sodium antiporter compare
MMP_RS01610 -8.6 -2.2 hypothetical protein compare
MMP_RS01225 -8.6 -3.0 DUF5379 domain-containing protein compare
MMP_RS00985 -8.6 -3.1 CDC48 family AAA ATPase compare
MMP_RS06295 -8.6 -4.3 methanogenesis marker 14 protein compare
MMP_RS07845 -8.5 -1.7 LL-diaminopimelate aminotransferase compare
MMP_RS01725 -8.5 -2.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS07330 -8.5 -25.8 membrane protein compare
MMP_RS01905 -8.4 -5.8 glycosyltransferase compare
MMP_RS06130 -8.4 -2.4 peptidylprolyl isomerase compare
MMP_RS07600 -8.4 -1.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07350 -8.3 -1.7 preprotein translocase subunit Sec61beta compare
MMP_RS03580 -8.3 -2.4 signal recognition particle-docking protein FtsY compare
MMP_RS07750 -8.3 -2.9 DUF357 domain-containing protein compare
MMP_RS01970 -8.2 -15.9 TIGR04279 domain-containing protein compare
MMP_RS03110 -8.2 -3.7 glycosyltransferase family 2 protein compare
MMP_RS07075 -8.2 -2.8 phosphomannomutase/phosphoglucomutase compare
MMP_RS01955 -8.2 -2.1 hypothetical protein compare
MMP_RS08600 -8.2 -1.9 flagellar protein D compare
MMP_RS03025 -8.1 -3.5 molybdenum cofactor guanylyltransferase compare
MMP_RS04090 -8.1 -2.1 hypothetical protein compare
MMP_RS01925 -8.1 -5.6 DUF1616 domain-containing protein compare
MMP_RS00685 -8.1 -2.6 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06270 -8.0 -3.2 TIGR00300 family protein compare
MMP_RS02240 -8.0 -2.3 methanogenesis marker 7 protein compare
MMP_RS06285 -8.0 -1.9 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02195 -8.0 -2.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS04710 -8.0 -1.6 hypothetical protein compare
MMP_RS08210 -7.9 -1.8 phosphatidylglycerophosphatase A compare
MMP_RS08440 -7.9 -2.0 cell division protein SepF compare
MMP_RS01890 -7.9 -3.0 nucleotide sugar dehydrogenase compare
MMP_RS08435 -7.8 -1.8 Era-like GTP-binding protein compare
MMP_RS02145 -7.8 -5.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS03640 -7.7 -2.5 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS01895 -7.7 -17.5 flippase compare
MMP_RS03700 -7.7 -4.8 sodium:proton antiporter compare
MMP_RS01380 -7.7 -2.6 PHP domain-containing protein compare
MMP_RS06400 -7.7 -1.5 4Fe-4S binding protein compare
MMP_RS06670 -7.7 -3.4 glucose-6-phosphate isomerase compare
MMP_RS01795 -7.6 -1.5 methanogenesis marker 6 protein compare
MMP_RS06020 -7.6 -2.9 archaeoflavoprotein AfpA compare
MMP_RS03400 -7.6 -2.0 archease compare
MMP_RS07200 -7.6 -3.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01910 -7.5 -12.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS02165 -7.5 -8.2 tRNA-dihydrouridine synthase compare
MMP_RS01325 -7.5 -1.7 dihydroneopterin aldolase family protein compare
MMP_RS06035 -7.5 -9.0 glycosyltransferase family 2 protein compare
MMP_RS01900 -7.4 -29.1 hypothetical protein compare
MMP_RS00335 -7.4 -3.6 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS06625 -7.4 -1.7 DNA primase compare
MMP_RS03035 -7.4 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08745 -7.3 -3.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01800 -7.3 -2.7 TIGR00303 family protein compare
MMP_RS05445 -7.2 -6.9 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS01880 -7.2 -7.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06120 -7.2 -1.6 UPF0147 family protein compare
MMP_RS06475 -7.1 -2.9 FAD-dependent oxidoreductase compare
MMP_RS06885 -7.1 -1.8 50S ribosome-binding GTPase compare
MMP_RS06895 -7.1 -1.4 selenocysteine-specific translation elongation factor compare
MMP_RS06730 -7.0 -1.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS04685 -7.0 -2.1 DUF126 domain-containing protein compare
MMP_RS00110 -7.0 -2.0 hypothetical protein compare
MMP_RS08650 -7.0 -2.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03600 -6.9 -1.8 triose-phosphate isomerase compare
MMP_RS02345 -6.9 -2.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04775 -6.9 -2.4 adenosylhomocysteinase compare
MMP_RS01920 -6.8 -17.6 glycosyltransferase family 2 protein compare
MMP_RS07390 -6.8 -1.9 cell division protein FtsZ compare
MMP_RS06925 -6.8 -1.8 ribonuclease VapC4 compare
MMP_RS09020 -6.8 -1.4 hypothetical protein compare
MMP_RS07730 -6.8 -1.8 pyruvate synthase subunit beta compare
MMP_RS08715 -6.8 -1.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01335 -6.7 -1.1 prefoldin subunit beta compare
MMP_RS03385 -6.7 -0.8 cation diffusion facilitator family transporter compare
MMP_RS08790 -6.7 -1.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS00130 -6.7 -0.8 nickel-responsive transcriptional regulator NikR compare
MMP_RS01020 -6.7 -0.8 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03445 -6.7 -0.8 methanogenesis marker 17 protein compare
MMP_RS08155 -6.7 -5.4 hypothetical protein compare
MMP_RS03155 -6.7 -5.9 precorrin-6A reductase compare
MMP_RS07435 -6.6 -1.5 GMP synthase subunit A compare
MMP_RS07380 -6.6 -1.7 transcription elongation factor Spt5 compare
MMP_RS05930 -6.5 -1.7 3-isopropylmalate dehydratase large subunit compare
MMP_RS02110 -6.5 -1.1 hypothetical protein compare
MMP_RS05345 -6.5 -3.8 hypothetical protein compare
MMP_RS06705 -6.4 -5.2 formate/nitrite transporter family protein compare
MMP_RS01915 -6.4 -13.2 DUF354 domain-containing protein compare
MMP_RS03435 -6.4 -1.5 ketol-acid reductoisomerase compare
MMP_RS05640 -6.4 -7.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05845 -6.3 -1.5 tRNA-intron lyase compare
MMP_RS01545 -6.3 -0.7 CBS domain-containing protein compare
MMP_RS05250 -6.3 -1.4 NFYB/HAP3 family transcription factor subunit compare
MMP_RS04780 -6.3 -2.0 ribonuclease P compare
MMP_RS07630 -6.2 -1.2 ATP-binding cassette domain-containing protein compare
MMP_RS06110 -6.2 -2.1 ATP-dependent protease LonB compare
MMP_RS08460 -6.2 -1.7 proteasome-activating nucleotidase compare
MMP_RS01455 -6.1 -4.0 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03960 -6.1 -0.7 hypothetical protein compare
MMP_RS02280 -6.1 -0.7 DUF211 domain-containing protein compare
MMP_RS00320 -6.1 -1.0 class I SAM-dependent methyltransferase compare
MMP_RS07525 -6.1 -5.0 4Fe-4S binding protein compare
MMP_RS02800 -6.0 -3.3 nucleotidyltransferase domain-containing protein compare
MMP_RS08720 -6.0 -1.4 4Fe-4S binding protein compare
MMP_RS05265 -6.0 -1.7 2-isopropylmalate synthase compare
MMP_RS05580 -6.0 -11.3 glycosyltransferase compare
MMP_RS03315 -5.9 -1.2 ferrous iron transport protein A compare
MMP_RS04215 -5.8 -4.8 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06230 -5.8 -1.8 helix-turn-helix domain-containing protein compare
MMP_RS02175 -5.7 -0.7 DUF1611 domain-containing protein compare
MMP_RS05555 -5.6 -0.9 DUF4040 domain-containing protein compare
MMP_RS00305 -5.6 -1.4 phosphoribosyl-ATP diphosphatase compare
MMP_RS03205 -5.5 -0.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS00895 -5.5 -3.5 hypothetical protein compare
MMP_RS03300 -5.4 -0.6 TOBE domain-containing protein compare
MMP_RS00300 -5.4 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01005 -5.4 -0.9 riboflavin synthase compare
MMP_RS01755 -5.3 -0.9 DUF2097 domain-containing protein compare
MMP_RS03475 -5.3 -0.6 hypothetical protein compare
MMP_RS08320 -5.3 -3.5 molybdopterin molybdotransferase MoeA compare
MMP_RS05550 -5.3 -0.6 cation:proton antiporter compare
MMP_RS01950 -5.3 -8.7 hypothetical protein compare
MMP_RS07755 -5.2 -0.9 DUF555 domain-containing protein compare
MMP_RS01830 -5.2 -0.8 tRNA-Val compare
MMP_RS07555 -5.1 -0.6 monovalent cation/H+ antiporter subunit E compare
MMP_RS07545 -5.1 -0.8 HTH domain-containing protein compare
MMP_RS08370 -5.0 -0.6 cation:proton antiporter subunit C compare
MMP_RS08300 -5.0 -1.0 metal-sulfur cluster assembly factor compare
MMP_RS00850 -5.0 -3.3 TIGR01177 family methyltransferase compare
MMP_RS00515 -5.0 -0.8 DUF655 domain-containing protein compare
MMP_RS01365 -4.9 -2.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS04585 -4.9 -7.1 AIR synthase related protein compare
MMP_RS00810 -4.9 -4.5 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS05920 -4.8 -0.6 50S ribosomal protein L37e compare
MMP_RS04870 -4.8 -3.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS07005 -4.8 -0.5 4Fe-4S binding protein compare
MMP_RS08635 -4.8 -1.3 UbiA family prenyltransferase compare
MMP_RS01385 -4.7 -0.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00695 -4.7 -0.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06630 -4.7 -0.8 UPF0058 family protein compare
MMP_RS06600 -4.7 -0.8 class III signal peptide-containing protein compare
MMP_RS03145 -4.6 -4.5 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS02885 -4.6 -8.2 molybdopterin biosynthesis protein compare
MMP_RS08645 -4.6 -5.0 UPF0179 family protein compare
MMP_RS07605 -4.5 -2.2 diadenylate cyclase compare
MMP_RS04720 -4.5 -2.5 DedA family protein compare
MMP_RS06315 -4.5 -0.7 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01750 -4.5 -6.0 DUF63 family protein compare
MMP_RS02900 -4.5 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05440 -4.5 -5.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS05925 -4.4 -2.1 small nuclear ribonucleoprotein compare
MMP_RS07090 -4.3 -5.9 tRNA (adenine-N1)-methyltransferase compare
MMP_RS08595 -4.3 -0.7 flagellar protein C compare
MMP_RS03590 -4.3 -3.2 METTL5 family protein compare
MMP_RS01945 -4.2 -5.9 DUF4350 domain-containing protein compare
MMP_RS01940 -4.2 -3.4 MoxR family ATPase compare
MMP_RS07735 -4.1 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01960 -4.1 -0.7 hypothetical protein compare
MMP_RS01700 -4.1 -0.7 dihydroxy-acid dehydratase compare
MMP_RS04890 -4.0 -0.7 adenylyltransferase/cytidyltransferase family protein compare


Specific Phenotypes

For 7 genes in this experiment

For mixed community Ethanolamine in Methanococcus maripaludis S2

For mixed community Ethanolamine across organisms