Experiment set1IT076 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_26685 -5.2 -6.1 cobalt efflux pump (from data) conserved
AO353_20695 -5.0 -6.0 O-succinylhomoserine sulfhydrylase compare
AO353_20625 -5.0 -3.5 3-isopropylmalate dehydratase compare
AO353_10670 -4.9 -8.8 shikimate dehydrogenase compare
AO353_13165 -4.8 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20635 -4.8 -13.0 3-isopropylmalate dehydrogenase compare
AO353_05115 -4.7 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13070 -4.7 -8.4 phosphoserine phosphatase compare
AO353_02070 -4.6 -7.6 prephenate dehydratase compare
AO353_20540 -4.6 -9.2 aromatic amino acid aminotransferase compare
AO353_12090 -4.5 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12070 -4.5 -9.1 imidazoleglycerol-phosphate dehydratase compare
AO353_02075 -4.4 -10.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_00430 -4.4 -5.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07210 -4.4 -6.0 indole-3-glycerol-phosphate synthase compare
AO353_08425 -4.3 -4.2 Cd(II)/Pb(II)-responsive transcriptional regulator conserved
AO353_12085 -4.3 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_14505 -4.3 -13.5 ketol-acid reductoisomerase compare
AO353_17590 -4.3 -9.5 transcriptional regulator conserved
AO353_07220 -4.3 -9.1 anthranilate synthase compare
AO353_07230 -4.2 -18.4 anthranilate synthase compare
AO353_08345 -4.1 -10.3 dihydroxy-acid dehydratase compare
AO353_08685 -4.1 -9.9 N-acetylglutamate synthase compare
AO353_20665 -4.1 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_14400 -4.0 -4.8 Fis family transcriptional regulator compare
AO353_12515 -4.0 -23.6 glutamate synthase compare
AO353_17575 -4.0 -12.3 hypothetical protein conserved
AO353_09000 -4.0 -6.1 argininosuccinate lyase compare
AO353_17595 -3.9 -14.5 histidine kinase conserved
AO353_08185 -3.8 -12.5 methionine biosynthesis protein MetW compare
AO353_08475 -3.8 -10.8 phosphoserine phosphatase compare
AO353_20175 -3.8 -4.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_08180 -3.8 -15.7 homoserine O-acetyltransferase compare
AO353_20620 -3.8 -7.9 isopropylmalate isomerase compare
AO353_12115 -3.8 -4.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12520 -3.8 -14.1 glutamate synthase compare
AO353_05110 -3.6 -13.7 histidinol dehydrogenase compare
AO353_14495 -3.6 -14.3 acetolactate synthase 3 catalytic subunit compare
AO353_08420 -3.6 -15.7 ATPase P conserved
AO353_07215 -3.6 -9.7 anthranilate phosphoribosyltransferase compare
AO353_22800 -3.5 -5.4 sulfite reductase compare
AO353_00490 -3.5 -4.8 PasA protein compare
AO353_09240 -3.5 -4.8 acetylglutamate kinase compare
AO353_08510 -3.5 -6.6 3-phosphoglycerate dehydrogenase compare
AO353_12075 -3.5 -10.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_00310 -3.5 -13.3 transaldolase compare
AO353_04105 -3.5 -11.0 argininosuccinate synthase compare
AO353_10710 -3.4 -6.9 tryptophan synthase subunit beta compare
AO353_17580 -3.4 -11.9 tricarboxylic transporter conserved
AO353_14500 -3.3 -9.0 acetolactate synthase 3 regulatory subunit compare
AO353_17570 -3.3 -11.0 tripartite tricarboxylate transporter TctA conserved
AO353_02685 -3.3 -5.4 phosphoribosylglycinamide formyltransferase compare
AO353_06155 -3.3 -11.1 copper-transporting ATPase compare
AO353_02710 -3.2 -15.8 (p)ppGpp synthetase compare
AO353_12365 -3.2 -5.6 phosphoribosyl-AMP cyclohydrolase compare
AO353_07155 -3.1 -10.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14990 -3.1 -3.9 hypothetical protein compare
AO353_05075 -3.1 -13.3 adenylylsulfate kinase compare
AO353_04155 -3.1 -13.9 ornithine carbamoyltransferase compare
AO353_15925 -3.1 -11.8 2-isopropylmalate synthase compare
AO353_12360 -3.1 -10.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08015 -3.0 -9.3 5,10-methylenetetrahydrofolate reductase compare
AO353_00825 -3.0 -4.9 porin compare
AO353_12500 -3.0 -2.8 shikimate kinase compare
AO353_08165 -3.0 -3.5 pyrroline-5-carboxylate reductase compare
AO353_16940 -2.9 -8.8 deoxycytidine triphosphate deaminase compare
AO353_14370 -2.8 -8.7 glucose-6-phosphate isomerase compare
AO353_06495 -2.7 -7.1 gamma-glutamyl phosphate reductase compare
AO353_06040 -2.7 -5.7 exodeoxyribonuclease V subunit alpha compare
AO353_17585 -2.7 -10.9 porin conserved
AO353_05080 -2.6 -12.9 sulfate adenylyltransferase compare
AO353_03020 -2.6 -9.7 arginine N-succinyltransferase compare
AO353_12420 -2.5 -5.2 predicted FeS cluster maintenance protein (from data) compare
AO353_11775 -2.4 -9.3 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_09040 -2.4 -3.1 diaminopimelate epimerase compare
AO353_14115 -2.4 -8.3 gamma-glutamyl kinase compare
AO353_21625 -2.3 -3.6 Fe/S biogenesis protein NfuA compare
AO353_14150 -2.3 -3.1 peptidylprolyl isomerase compare
AO353_10705 -2.3 -5.1 tryptophan synthase subunit alpha compare
AO353_10025 -2.3 -14.9 pyruvate carboxylase subunit B compare
AO353_03580 -2.3 -5.0 ATP-dependent DNA helicase RuvB compare
AO353_19060 -2.3 -6.4 CysB family transcriptional regulator compare
AO353_27675 -2.2 -9.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_02270 -2.1 -6.4 isochorismatase compare
AO353_13640 -2.1 -4.2 histidine kinase compare
AO353_14220 -2.1 -2.5 ribosomal large subunit pseudouridine synthase D compare
AO353_13140 -2.1 -6.3 tRNA dimethylallyltransferase compare
AO353_10030 -2.0 -10.2 pyruvate carboxylase subunit A compare
AO353_07075 -2.0 -6.0 elongation factor Tu compare
AO353_14405 -2.0 -10.5 ATPase compare
AO353_06045 -2.0 -8.9 exodeoxyribonuclease V subunit beta compare
AO353_10035 -1.9 -8.0 LysR family transcriptional regulator compare
AO353_08470 -1.9 -4.7 RNA pyrophosphohydrolase compare
AO353_08780 -1.9 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_02300 -1.9 -3.2 MarR family transcriptional regulator compare
AO353_14410 -1.8 -8.5 MFS transporter compare
AO353_04175 -1.8 -5.9 glycerol uptake facilitator GlpF compare
AO353_08885 -1.7 -12.7 polyphosphate kinase compare
AO353_14935 -1.7 -4.7 aminopeptidase compare
AO353_06050 -1.7 -6.3 exodeoxyribonuclease V subunit gamma compare
AO353_00750 -1.7 -4.2 GntR family transcriptional regulator compare
AO353_01550 -1.7 -5.7 hypothetical protein compare
AO353_04180 -1.6 -8.8 glycerol kinase compare
AO353_05010 -1.6 -1.8 HopJ type III effector protein compare
AO353_16425 -1.6 -2.0 Fe-S metabolism protein SufE compare
AO353_03590 -1.6 -3.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_02250 -1.5 -2.2 chorismate synthase compare
AO353_02000 -1.5 -3.2 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_01410 -1.5 -3.9 ribonuclease E compare
AO353_20095 -1.5 -4.8 histidine kinase compare
AO353_10730 -1.4 -2.2 hypothetical protein compare
AO353_05105 -1.4 -7.9 histidinol-phosphate aminotransferase compare
AO353_22345 -1.4 -7.1 ATPase compare
AO353_04565 -1.4 -5.7 nucleoid-associated protein compare
AO353_23620 -1.3 -3.1 hypothetical protein compare
AO353_04650 -1.3 -3.5 molybdenum cofactor biosynthesis protein MoaE compare
AO353_19090 -1.3 -2.2 MarR family transcriptional regulator compare
AO353_09285 -1.3 -7.5 reactive intermediate/imine deaminase compare
AO353_02005 -1.3 -2.0 hypothetical protein compare
AO353_26945 -1.3 -1.9 transcriptional regulator compare
AO353_08995 -1.3 -7.8 chemotaxis protein CheY compare
AO353_15185 -1.3 -4.8 ATPase compare
AO353_02940 -1.3 -2.3 DNA-binding protein compare
AO353_16005 -1.3 -6.0 copper oxidase conserved
AO353_03015 -1.3 -4.6 arginine N-succinyltransferase compare
AO353_15250 -1.3 -3.5 cytochrome B compare
AO353_03980 -1.3 -6.0 thiol oxidoreductase conserved
AO353_04355 -1.2 -1.8 homoserine dehydrogenase compare
AO353_11165 -1.2 -6.7 hypothetical protein compare
AO353_12240 -1.2 -4.1 histidine utilization repressor compare
AO353_27650 -1.2 -4.3 cell division protein FtsK compare
AO353_11040 -1.2 -7.6 citrate transporter conserved
AO353_12080 -1.2 -3.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_29215 -1.2 -2.2 alpha/beta hydrolase compare
AO353_05625 -1.2 -1.5 transcription elongation factor GreA compare
AO353_14595 -1.2 -7.0 carbonate dehydratase compare
AO353_20585 -1.2 -3.3 TetR family transcriptional regulator compare
AO353_22340 -1.2 -5.3 GfdT protein compare
AO353_08100 -1.2 -3.0 chemotaxis protein CheY compare
AO353_06405 -1.2 -4.7 hypothetical protein compare
AO353_12045 -1.1 -4.2 iron transporter compare
AO353_08505 -1.1 -7.2 FAD-linked oxidase compare
AO353_17750 -1.1 -3.0 transcriptional regulator compare
AO353_10435 -1.1 -6.7 chromosome partitioning protein compare
AO353_20185 -1.1 -4.8 DNA-binding protein compare
AO353_04930 -1.1 -2.5 flavodoxin compare
AO353_04015 -1.1 -5.8 histidine kinase compare
AO353_05325 -1.1 -4.4 GntR family transcriptional regulator compare
AO353_19360 -1.1 -2.4 peroxiredoxin compare
AO353_12460 -1.1 -5.5 malate dehydrogenase compare
AO353_12345 -1.1 -2.0 twin-arginine protein translocation system subunit TatC compare
AO353_04130 -1.0 -5.3 (2Fe-2S)-binding protein compare
AO353_05690 -1.0 -3.2 SsrA-binding protein compare
AO353_28425 -1.0 -3.0 TetR family transcriptional regulator compare
AO353_14420 -1.0 -3.5 molecular chaperone DnaK compare
AO353_09045 -1.0 -2.3 hypothetical protein compare
AO353_16605 -1.0 -7.3 protein-L-isoaspartate O-methyltransferase compare
AO353_12880 -1.0 -2.2 ADP-heptose--LPS heptosyltransferase compare
AO353_10510 -1.0 -1.8 benzoate transporter compare
AO353_10455 -1.0 -1.3 tRNA modification GTPase MnmE compare
AO353_10430 -1.0 -2.7 chromosome partitioning protein ParB compare
AO353_16805 -1.0 -4.5 recombinase RecA compare
AO353_10040 -1.0 -5.8 transcriptional regulator compare
AO353_03025 -1.0 -3.4 acetylornithine aminotransferase compare
AO353_02810 -1.0 -5.6 histidine kinase compare
AO353_02195 -1.0 -3.8 spermidine synthase compare
AO353_08265 -0.9 -3.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_19085 -0.9 -2.7 organic hydroperoxide resistance protein compare
AO353_20810 -0.9 -2.2 hypothetical protein compare
AO353_11850 -0.9 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_03975 -0.9 -5.0 peptidase conserved
AO353_11530 -0.9 -4.7 diguanylate cyclase compare
AO353_05420 -0.9 -1.7 peptide chain release factor 3 compare
AO353_15295 -0.9 -4.3 division/cell wall cluster transcriptional repressor MraZ compare
AO353_08115 -0.9 -3.3 energy transducer TonB compare
AO353_15975 -0.9 -3.3 GntR family transcriptional regulator compare
AO353_13160 -0.9 -2.0 membrane protease HflC compare
AO353_13925 -0.9 -2.1 XRE family transcriptional regulator compare
AO353_11035 -0.9 -4.9 hypothetical protein compare
AO353_14395 -0.9 -3.0 poly(A) polymerase compare
AO353_09260 -0.8 -4.2 ribonuclease PH compare
AO353_24130 -0.8 -2.5 hypothetical protein compare
AO353_04220 -0.8 -3.2 chemotaxis protein CheY compare
AO353_05550 -0.8 -4.1 pseudouridine synthase compare
AO353_01355 -0.8 -5.0 3-oxoacyl-ACP synthase compare
AO353_23245 -0.8 -2.3 DNA-3-methyladenine glycosylase compare
AO353_05520 -0.8 -3.4 nicotinate-nucleotide pyrophosphorylase compare
AO353_13245 -0.8 -4.3 hypothetical protein compare
AO353_19770 -0.8 -1.5 peptidase compare
AO353_15785 -0.8 -4.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_10440 -0.8 -3.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_20510 -0.8 -1.6 amidase compare
AO353_03585 -0.8 -2.1 ATP-dependent DNA helicase RuvA compare
AO353_04410 -0.8 -2.2 phosphoribosylglycinamide formyltransferase compare
AO353_19055 -0.8 -4.5 universal stress protein UspA compare
AO353_19310 -0.8 -1.7 enoyl-CoA hydratase compare
AO353_02320 -0.8 -4.5 allantoinase compare
AO353_02970 -0.8 -2.5 carbon storage regulator compare
AO353_00510 -0.8 -3.7 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_10825 -0.8 -6.0 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source Trisodium citrate dihydrate across organisms