Experiment set1IT076 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Trisodium citrate dihydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_16615 +2.8 24.1 RNA polymerase sigma factor RpoS compare
AO353_02735 +2.1 18.5 chemotaxis protein CheY compare
AO353_21830 +2.0 16.9 chemotaxis protein CheY compare
AO353_09250 +1.8 8.6 exodeoxyribonuclease III compare
AO353_00495 +1.5 5.3 DNA topoisomerase I compare
AO353_19340 +1.5 13.1 amino acid ABC transporter substrate-binding protein compare
AO353_16530 +1.2 3.2 ribonuclease HII compare
AO353_06320 +1.1 4.8 AsnC family transcriptional regulator compare
AO353_11155 +1.0 9.3 thioesterase compare
AO353_11195 +1.0 9.0 hemolysin secretion protein D compare
AO353_11190 +1.0 8.7 ABC transporter compare
AO353_12580 +1.0 2.9 type II secretory protein PulK compare
AO353_14030 +1.0 8.3 ABC transporter ATP-binding protein compare
AO353_11180 +1.0 9.2 large adhesive protein compare
AO353_11185 +1.0 8.3 channel protein TolC compare
AO353_19335 +1.0 7.3 TetR family transcriptional regulator compare
AO353_14590 +1.0 2.1 serine kinase/phosphatase compare
AO353_00105 +0.9 1.9 hypothetical protein compare
AO353_20925 +0.9 2.3 hypothetical protein compare
AO353_16350 +0.9 4.2 SAM-dependent methyltransferase compare
AO353_09945 +0.9 4.8 LysR family transcriptional regulator compare
AO353_09275 +0.9 2.7 DNA-directed RNA polymerase subunit omega compare
AO353_12915 +0.8 5.7 carbamoyltransferase compare
AO353_23410 +0.8 2.1 hypothetical protein compare
AO353_11945 +0.8 0.9 4-oxalocrotonate tautomerase compare
AO353_15050 +0.8 3.0 nitrate transport permease nrtB compare
AO353_10890 +0.8 4.2 methionine ABC transporter ATP-binding protein compare
AO353_27905 +0.8 3.1 N-formylglutamate amidohydrolase compare
AO353_05490 +0.7 4.0 transcriptional regulator compare
AO353_15410 +0.7 1.9 hypothetical protein compare
AO353_15290 +0.7 5.0 methyltransferase compare
AO353_26220 +0.7 2.3 hypothetical protein compare
AO353_22530 +0.7 3.0 hypothetical protein compare
AO353_06540 +0.7 1.9 hypothetical protein compare
AO353_13300 +0.7 2.1 LOG family protein compare
AO353_05130 +0.7 1.7 anti-anti-sigma factor compare
AO353_09315 +0.7 5.5 LysR family transcriptional regulator compare
AO353_09340 +0.7 2.5 hypothetical protein compare
AO353_08875 +0.7 1.4 amino acid ABC transporter ATP-binding protein compare
AO353_22510 +0.7 3.1 hypothetical protein compare
AO353_04090 +0.7 2.1 leucyl-tRNA synthetase compare
AO353_19040 +0.7 3.9 thioredoxin compare
AO353_08030 +0.7 4.6 DEAD/DEAH box helicase compare
AO353_08965 +0.7 3.7 transcriptional regulator compare
AO353_08855 +0.6 2.7 GntR family transcriptional regulator compare
AO353_00125 +0.6 1.5 hypothetical protein compare
AO353_13660 +0.6 4.5 tRNA-dihydrouridine synthase B compare
AO353_15260 +0.6 3.5 stringent starvation protein A compare
AO353_12575 +0.6 2.7 type II secretion system protein GspJ compare
AO353_04810 +0.6 1.6 hypothetical protein compare
AO353_21355 +0.6 1.0 xylose isomerase compare
AO353_16745 +0.6 2.0 ArsR family transcriptional regulator compare
AO353_25450 +0.6 2.0 cyanate hydratase compare
AO353_24120 +0.6 1.4 hypothetical protein compare
AO353_03420 +0.6 3.2 phosphogluconate dehydratase compare
AO353_11170 +0.6 4.5 hypothetical protein compare
AO353_26935 +0.6 1.8 LysR family transcriptional regulator compare
AO353_17160 +0.6 1.5 aspartate-semialdehyde dehydrogenase compare
AO353_19025 +0.6 4.7 acetyltransferase compare
AO353_24440 +0.6 1.9 reactive intermediate/imine deaminase compare
AO353_11160 +0.6 3.5 GntR family transcriptional regulator compare
AO353_22420 +0.6 2.5 histidine kinase compare
AO353_10990 +0.6 4.1 glutamate:protein symporter compare
AO353_24135 +0.6 2.0 hypothetical protein compare
AO353_27350 +0.6 1.7 hypothetical protein compare
AO353_05280 +0.6 1.9 4-carboxymuconolactone decarboxylase compare
AO353_20815 +0.6 1.9 LacI family transcriptional regulator compare
AO353_12600 +0.6 2.9 LysR family transcriptional regulator compare
AO353_18325 +0.5 1.8 hypothetical protein compare
AO353_21770 +0.5 2.3 3-hydroxybutyrate dehydrogenase compare
AO353_17855 +0.5 2.0 ribonuclease D compare
AO353_11940 +0.5 1.8 hypothetical protein compare
AO353_02520 +0.5 1.8 sodium transporter compare
AO353_04625 +0.5 4.4 ATP-dependent RNA helicase RhlB compare
AO353_05880 +0.5 0.9 plasmid stabilization protein compare
AO353_07465 +0.5 1.3 addiction module toxin RelE compare
AO353_24740 +0.5 1.3 hypothetical protein compare
AO353_07875 +0.5 2.0 hypothetical protein compare
AO353_24260 +0.5 1.4 hypothetical protein compare
AO353_02630 +0.5 1.4 5,6-dimethylbenzimidazole synthase compare
AO353_13670 +0.5 2.5 ribosomal protein L11 methyltransferase compare
AO353_27575 +0.5 1.6 hypothetical protein compare
AO353_13050 +0.5 1.9 DNA topoisomerase IV compare
AO353_22930 +0.5 2.0 hypothetical protein compare
AO353_12700 +0.5 2.8 3-oxoacyl-ACP synthase compare
AO353_25065 +0.5 3.6 tricarballylate dehydrogenase compare
AO353_01060 +0.5 2.6 3-ketoacyl-ACP reductase compare
AO353_24405 +0.5 1.4 ArsR family transcriptional regulator compare
AO353_01795 +0.5 1.3 hypothetical protein compare
AO353_14485 +0.5 0.6 pseudouridine synthase compare
AO353_13465 +0.5 3.1 hypothetical protein compare
AO353_18595 +0.5 3.0 flagellar biosynthesis protein FlgF compare
AO353_23430 +0.5 2.2 (2Fe-2S)-binding protein compare
AO353_17130 +0.5 3.4 hypothetical protein compare
AO353_00195 +0.5 0.9 virion morphogenesis protein compare
AO353_03450 +0.5 2.6 heme oxygenase compare
AO353_20790 +0.5 1.8 penicillin-binding protein activator LpoB compare
AO353_19610 +0.5 2.0 hypothetical protein compare
AO353_27660 +0.5 1.5 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_26070 +0.5 1.6 hypothetical protein compare
AO353_03935 +0.5 1.6 fructose-bisphosphate aldolase compare
AO353_26815 +0.5 1.7 transcriptional regulator compare
AO353_06100 +0.5 1.5 thymidylate synthase compare
AO353_12730 +0.4 2.2 hypothetical protein compare
AO353_06250 +0.4 2.3 GNAT family acetyltransferase compare
AO353_21595 +0.4 2.6 serine/threonine protein kinase compare
AO353_02815 +0.4 2.6 transcriptional regulator compare
AO353_08525 +0.4 2.0 purine nucleoside phosphorylase compare
AO353_22415 +0.4 1.8 alcohol dehydrogenase compare
AO353_15640 +0.4 1.9 acetylornithine aminotransferase compare
AO353_05125 +0.4 2.2 BolA family transcriptional regulator compare
AO353_17870 +0.4 1.9 NADH dehydrogenase compare
AO353_16795 +0.4 1.7 lysozyme compare
AO353_27415 +0.4 1.5 hypothetical protein compare
AO353_12470 +0.4 3.8 peptidase compare
AO353_27890 +0.4 2.1 RpiR family transcriptional regulator compare
AO353_26620 +0.4 1.7 ArsR family transcriptional regulator compare
AO353_29160 +0.4 1.4 GTP pyrophosphokinase compare
AO353_11770 +0.4 1.1 molecular chaperone Hsp33 compare
AO353_01810 +0.4 3.0 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_11695 +0.4 1.8 hypothetical protein compare
AO353_17665 +0.4 2.8 glycine cleavage system protein R compare
AO353_00120 +0.4 1.6 DNA-binding protein compare
AO353_12455 +0.4 1.8 nuclease compare
AO353_27330 +0.4 2.1 hypothetical protein compare
AO353_17975 +0.4 2.9 arabinose ABC transporter permease compare
AO353_21410 +0.4 1.0 hypothetical protein compare
AO353_03140 +0.4 2.1 hypothetical protein compare
AO353_09565 +0.4 2.8 type VI secretion protein compare
AO353_04100 +0.4 2.3 hypothetical protein compare
AO353_08635 +0.4 2.3 hypothetical protein compare
AO353_21320 +0.4 1.4 glutathione S-transferase compare
AO353_00330 +0.4 3.2 hypothetical protein compare
AO353_16355 +0.4 2.0 TetR family transcriptional regulator compare
AO353_13200 +0.4 3.2 exoribonuclease R compare
AO353_02640 +0.4 1.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_22675 +0.4 2.1 hypothetical protein compare
AO353_23385 +0.4 2.2 trans-2-enoyl-CoA reductase compare
AO353_10085 +0.4 1.8 pyridoxamine kinase compare
AO353_12930 +0.4 1.7 GlcNAc-PI de-N-acetylase compare
AO353_09400 +0.4 1.6 hypothetical protein compare
AO353_07970 +0.4 2.3 aromatic ring-opening dioxygenase LigA compare
AO353_02765 +0.4 1.6 NAD(P)H-quinone oxidoreductase compare
AO353_14970 +0.4 1.9 hypothetical protein compare
AO353_28780 +0.4 1.9 hypothetical protein compare
AO353_21825 +0.4 2.7 GNAT family acetyltransferase compare
AO353_09765 +0.4 2.0 hypothetical protein compare
AO353_19015 +0.4 3.3 hypothetical protein compare
AO353_24810 +0.4 2.0 transcriptional regulator compare
AO353_03515 +0.4 1.0 cold-shock protein compare
AO353_02860 +0.4 1.8 flagellar biosynthesis protein FlgB compare
AO353_20535 +0.4 1.4 hypothetical protein compare
AO353_16635 +0.4 2.1 pyocin R2, holin compare
AO353_23910 +0.4 1.0 response regulator compare
AO353_04585 +0.4 2.1 ketosteroid isomerase compare
AO353_17005 +0.4 1.1 hypothetical protein compare
AO353_04325 +0.4 0.9 hypothetical protein compare
AO353_03065 +0.4 2.4 hypothetical protein compare
AO353_22350 +0.4 2.0 LuxR family transcriptional regulator compare
AO353_28670 +0.4 1.6 hypothetical protein compare
AO353_03660 +0.4 1.6 hypothetical protein compare
AO353_04500 +0.4 1.1 DNA repair protein RecO compare
AO353_20860 +0.4 1.3 hypothetical protein compare
AO353_00160 +0.4 1.9 hypothetical protein compare
AO353_01540 +0.4 2.3 ABC transporter substrate-binding protein compare
AO353_24820 +0.4 2.2 histidine kinase compare
AO353_14585 +0.4 2.1 ribosomal-protein-alanine acetyltransferase compare
AO353_06135 +0.4 1.6 NADPH:quinone reductase compare
AO353_02660 +0.4 1.7 peptidase P60 compare
AO353_08380 +0.4 1.8 GTPase SAR1 compare
AO353_08395 +0.4 1.9 FAD-dependent oxidoreductase compare
AO353_24785 +0.4 2.0 AraC family transcriptional regulator compare
AO353_10905 +0.4 2.7 zinc ABC transporter ATP-binding protein compare
AO353_00470 +0.4 2.3 CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase compare
AO353_01185 +0.4 2.0 superfamily II DNA/RNA helicase, SNF2 family protein compare
AO353_29355 +0.4 1.3 hypothetical protein compare
AO353_08595 +0.4 2.5 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO353_01020 +0.4 1.3 hypothetical protein compare
AO353_23235 +0.4 1.7 NADP oxidoreductase compare
AO353_26115 +0.4 0.9 hypothetical protein compare
AO353_14865 +0.4 2.0 cupin compare
AO353_20910 +0.4 2.0 MerR family transcriptional regulator compare
AO353_04480 +0.4 1.6 NGG1p interacting factor NIF3 compare
AO353_24000 +0.4 1.8 isochorismate synthase compare
AO353_26080 +0.3 1.1 hypothetical protein compare
AO353_13405 +0.3 0.9 urease accessory protein UreF compare
AO353_29365 +0.3 1.0 paraquat-inducible protein A compare
AO353_12690 +0.3 0.5 acyl carrier protein compare
AO353_07910 +0.3 1.1 hypothetical protein compare
AO353_21465 +0.3 1.2 cation:proton antiporter compare
AO353_19265 +0.3 1.6 hypothetical protein compare
AO353_24335 +0.3 1.7 L-asparagine permease compare
AO353_09500 +0.3 2.0 hypothetical protein compare
AO353_26810 +0.3 1.4 (2Fe-2S)-binding protein compare
AO353_21990 +0.3 1.5 cytochrome C compare
AO353_28235 +0.3 1.9 acetylornithine deacetylase compare
AO353_00435 +0.3 3.1 transcription-repair coupling factor compare
AO353_18185 +0.3 1.8 hypothetical protein compare
AO353_02920 +0.3 1.6 serine recombinase compare
AO353_22645 +0.3 1.0 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source Trisodium citrate dihydrate across organisms