Experiment set1IT076 for Bacteroides thetaiotaomicron VPI-5482
L-Fucose carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + L-Fucose (20 mM)
Culturing: Btheta_ML6, 24-well transparent microplate, Anaerobic, at 37 (C), shaken=0 rpm
By: Hualan on 8-May-17
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 5 genes in this experiment
For carbon source L-Fucose in Bacteroides thetaiotaomicron VPI-5482
For carbon source L-Fucose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| L-fucose utilization | 4 |
| L-fucose utilization temp | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Pentose and glucuronate interconversions
- Pyrimidine metabolism
- Drug metabolism - other enzymes
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| D-arabinose degradation I | 2 | 2 | 2 |
| L-fucose degradation I | 4 | 4 | 3 |
| D-arabinose degradation II | 4 | 3 | 3 |
| pyrimidine ribonucleosides salvage I | 3 | 3 | 2 |
| ribitol degradation I | 2 | 1 | 1 |
| D-arabinose degradation V | 3 | 1 | 1 |
| superpathway of fucose and rhamnose degradation | 12 | 10 | 3 |
| superpathway of pyrimidine ribonucleosides salvage | 10 | 9 | 2 |
| lactate biosynthesis (archaea) | 5 | 2 | 1 |
| nucleoside and nucleotide degradation (halobacteria) | 6 | 3 | 1 |
| nucleoside and nucleotide degradation (archaea) | 10 | 4 | 1 |
| superpathway of pentose and pentitol degradation | 42 | 12 | 4 |