Experiment set1IT075 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
AO353_07220 -4.9 -5.8 anthranilate synthase compare
AO353_02070 -4.8 -4.7 prephenate dehydratase compare
AO353_00430 -4.8 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12070 -4.6 -7.0 imidazoleglycerol-phosphate dehydratase compare
AO353_10670 -4.4 -8.9 shikimate dehydrogenase compare
AO353_20635 -4.3 -12.5 3-isopropylmalate dehydrogenase compare
AO353_20625 -4.3 -4.2 3-isopropylmalate dehydratase compare
AO353_20665 -4.3 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_11775 -4.3 -8.7 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_12365 -4.2 -4.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_12515 -4.2 -21.4 glutamate synthase compare
AO353_05115 -4.1 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_14505 -4.1 -12.1 ketol-acid reductoisomerase compare
AO353_09240 -4.1 -2.8 acetylglutamate kinase compare
AO353_07210 -4.1 -6.3 indole-3-glycerol-phosphate synthase compare
AO353_13165 -4.1 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_13070 -4.0 -8.9 phosphoserine phosphatase compare
AO353_07230 -4.0 -17.0 anthranilate synthase compare
AO353_12520 -4.0 -12.7 glutamate synthase compare
AO353_22800 -4.0 -4.7 sulfite reductase compare
AO353_08185 -4.0 -11.1 methionine biosynthesis protein MetW compare
AO353_12085 -4.0 -8.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20620 -3.9 -8.0 isopropylmalate isomerase compare
AO353_08180 -3.9 -14.0 homoserine O-acetyltransferase compare
AO353_05110 -3.7 -12.1 histidinol dehydrogenase compare
AO353_12075 -3.7 -8.9 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20695 -3.7 -7.0 O-succinylhomoserine sulfhydrylase compare
AO353_08345 -3.7 -9.8 dihydroxy-acid dehydratase compare
AO353_14500 -3.7 -7.0 acetolactate synthase 3 regulatory subunit compare
AO353_10710 -3.6 -5.6 tryptophan synthase subunit beta compare
AO353_07215 -3.6 -9.0 anthranilate phosphoribosyltransferase compare
AO353_21625 -3.6 -3.5 Fe/S biogenesis protein NfuA compare
AO353_19060 -3.6 -4.9 CysB family transcriptional regulator compare
AO353_08685 -3.6 -9.8 N-acetylglutamate synthase compare
AO353_02075 -3.6 -12.0 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20540 -3.6 -8.8 aromatic amino acid aminotransferase compare
AO353_02800 -3.6 -13.3 C4-dicarboxylate transporter conserved
AO353_08475 -3.5 -10.9 phosphoserine phosphatase compare
AO353_04155 -3.5 -13.4 ornithine carbamoyltransferase compare
AO353_12500 -3.5 -2.4 shikimate kinase compare
AO353_14495 -3.5 -12.9 acetolactate synthase 3 catalytic subunit compare
AO353_14115 -3.4 -6.5 gamma-glutamyl kinase compare
AO353_03795 -3.3 -6.2 fumarate hydratase compare
AO353_12360 -3.2 -10.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08510 -3.2 -6.1 3-phosphoglycerate dehydrogenase compare
AO353_04105 -3.1 -10.5 argininosuccinate synthase compare
AO353_15185 -3.1 -6.3 ATPase compare
AO353_14150 -3.0 -2.9 peptidylprolyl isomerase compare
AO353_15925 -3.0 -12.4 2-isopropylmalate synthase compare
AO353_07155 -3.0 -9.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_11860 -3.0 -8.5 Fis family transcriptional regulator conserved
AO353_10705 -2.9 -6.1 tryptophan synthase subunit alpha compare
AO353_09000 -2.9 -7.2 argininosuccinate lyase compare
AO353_14370 -2.9 -8.2 glucose-6-phosphate isomerase compare
AO353_07355 -2.8 -6.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_12115 -2.8 -3.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08015 -2.8 -8.1 5,10-methylenetetrahydrofolate reductase compare
AO353_16940 -2.7 -7.8 deoxycytidine triphosphate deaminase compare
AO353_05105 -2.7 -11.4 histidinol-phosphate aminotransferase compare
AO353_12460 -2.6 -9.4 malate dehydrogenase compare
AO353_02685 -2.6 -4.9 phosphoribosylglycinamide formyltransferase compare
AO353_00825 -2.6 -4.8 porin compare
AO353_05690 -2.5 -4.9 SsrA-binding protein compare
AO353_03580 -2.4 -4.6 ATP-dependent DNA helicase RuvB compare
AO353_12090 -2.3 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_06495 -2.2 -5.4 gamma-glutamyl phosphate reductase compare
AO353_03020 -2.1 -7.0 arginine N-succinyltransferase compare
AO353_04355 -2.1 -3.1 homoserine dehydrogenase compare
AO353_13640 -2.1 -5.4 histidine kinase compare
AO353_14940 -2.0 -4.3 malate:quinone oxidoreductase compare
AO353_06320 -2.0 -5.0 AsnC family transcriptional regulator compare
AO353_00610 -1.9 -3.1 cytochrome C oxidase Cbb3 compare
AO353_09285 -1.9 -9.5 reactive intermediate/imine deaminase compare
AO353_13225 -1.9 -3.4 50S ribosomal protein L9 compare
AO353_08165 -1.9 -3.5 pyrroline-5-carboxylate reductase compare
AO353_09890 -1.8 -5.7 phosphate ABC transporter ATP-binding protein compare
AO353_06045 -1.8 -7.6 exodeoxyribonuclease V subunit beta compare
AO353_23620 -1.8 -3.5 hypothetical protein compare
AO353_06050 -1.8 -6.8 exodeoxyribonuclease V subunit gamma compare
AO353_14400 -1.8 -5.1 Fis family transcriptional regulator compare
AO353_14420 -1.8 -4.3 molecular chaperone DnaK compare
AO353_11865 -1.7 -7.5 ATPase conserved
AO353_02250 -1.7 -3.0 chorismate synthase compare
AO353_13140 -1.7 -5.9 tRNA dimethylallyltransferase compare
AO353_12145 -1.7 -4.2 nitrogen regulation protein NR(I) compare
AO353_15725 -1.6 -4.8 hypothetical protein compare
AO353_14220 -1.6 -1.5 ribosomal large subunit pseudouridine synthase D compare
AO353_03585 -1.6 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_03590 -1.6 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_06040 -1.6 -4.0 exodeoxyribonuclease V subunit alpha compare
AO353_04565 -1.5 -5.6 nucleoid-associated protein compare
AO353_27650 -1.5 -4.6 cell division protein FtsK compare
AO353_05075 -1.5 -8.5 adenylylsulfate kinase compare
AO353_08130 -1.5 -2.9 uracil phosphoribosyltransferase compare
AO353_12930 -1.5 -3.7 GlcNAc-PI de-N-acetylase compare
AO353_16210 -1.4 -9.0 XRE family transcriptional regulator compare
AO353_15250 -1.4 -3.5 cytochrome B compare
AO353_22685 -1.4 -3.7 peroxidase compare
AO353_11850 -1.4 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_04175 -1.4 -4.6 glycerol uptake facilitator GlpF compare
AO353_03015 -1.4 -4.5 arginine N-succinyltransferase compare
AO353_02720 -1.4 -5.1 cysteine synthase compare
AO353_10455 -1.3 -2.0 tRNA modification GTPase MnmE compare
AO353_16810 -1.3 -3.6 recombinase RecX compare
AO353_18540 -1.3 -3.2 pseudouridine synthase compare
AO353_08880 -1.3 -2.2 exopolyphosphatase compare
AO353_19360 -1.3 -2.9 peroxiredoxin compare
AO353_03615 -1.3 -3.2 cold-shock protein compare
AO353_00660 -1.3 -3.0 transcriptional regulator compare
AO353_11165 -1.3 -7.1 hypothetical protein compare
AO353_00460 -1.3 -2.6 TetR family transcriptional regulator compare
AO353_12710 -1.3 -2.1 thioredoxin compare
AO353_08780 -1.3 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
AO353_10320 -1.2 -2.2 hypothetical protein compare
AO353_02710 -1.2 -8.3 (p)ppGpp synthetase compare
AO353_11530 -1.2 -6.7 diguanylate cyclase compare
AO353_12420 -1.2 -3.2 predicted FeS cluster maintenance protein (from data) compare
AO353_00495 -1.2 -1.6 DNA topoisomerase I compare
AO353_05520 -1.2 -4.5 nicotinate-nucleotide pyrophosphorylase compare
AO353_00490 -1.2 -2.9 PasA protein compare
AO353_13160 -1.1 -2.2 membrane protease HflC compare
AO353_00650 -1.1 -2.3 cytochrome biogenesis protein compare
AO353_04220 -1.1 -4.5 chemotaxis protein CheY compare
AO353_23165 -1.1 -3.3 cupin compare
AO353_02280 -1.1 -1.6 DNA mismatch repair protein MutS compare
AO353_06155 -1.1 -6.0 copper-transporting ATPase compare
AO353_12650 -1.1 -1.4 hypothetical protein compare
AO353_10435 -1.1 -5.9 chromosome partitioning protein compare
AO353_02810 -1.0 -5.6 histidine kinase compare
AO353_20185 -1.0 -4.7 DNA-binding protein compare
AO353_10430 -1.0 -2.9 chromosome partitioning protein ParB compare
AO353_00515 -1.0 -2.7 hypothetical protein compare
AO353_16805 -1.0 -4.4 recombinase RecA compare
AO353_07645 -1.0 -1.4 sarcosine oxidase subunit gamma compare
AO353_16495 -1.0 -4.1 zinc metallopeptidase RseP compare
AO353_22520 -1.0 -2.0 hypothetical protein compare
AO353_00865 -1.0 -6.1 phosphoenolpyruvate synthase compare
AO353_03525 -1.0 -5.7 quinolinate synthase A compare
AO353_05010 -1.0 -1.7 HopJ type III effector protein compare
AO353_08910 -1.0 -2.3 hypothetical protein compare
AO353_01410 -1.0 -2.2 ribonuclease E compare
AO353_21330 -1.0 -5.0 RpiR family transcriptional regulator compare
AO353_07525 -0.9 -6.8 biotin synthase compare
AO353_12665 -0.9 -1.8 glycosyl transferase compare
AO353_02520 -0.9 -2.1 sodium transporter compare
AO353_27335 -0.9 -1.6 hypothetical protein compare
AO353_02975 -0.9 -2.5 aspartate kinase compare
AO353_10945 -0.9 -1.9 cytochrome C compare
AO353_19530 -0.9 -1.6 quinohemoprotein amine dehydrogenase compare
AO353_12105 -0.9 -4.0 peptidase S41 compare
AO353_02595 -0.9 -2.5 cobalamin synthase compare
AO353_11770 -0.9 -1.6 molecular chaperone Hsp33 compare
AO353_13600 -0.9 -2.9 precorrin-6Y C5,15-methyltransferase compare
AO353_19205 -0.9 -2.5 hypothetical protein compare
AO353_09440 -0.9 -1.9 type VI secretion protein compare
AO353_28910 -0.9 -2.4 hypothetical protein compare
AO353_10440 -0.9 -3.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_13605 -0.9 -5.0 oxidoreductase compare
AO353_07075 -0.9 -3.1 elongation factor Tu compare
AO353_07445 -0.9 -1.7 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_01685 -0.9 -1.8 hypothetical protein compare
AO353_16980 -0.9 -1.9 isochorismatase compare
AO353_27985 -0.9 -2.0 peptidase M14 compare
AO353_19250 -0.9 -1.6 molybdenum cofactor guanylyltransferase compare
AO353_21430 -0.8 -1.9 hypothetical protein compare
AO353_11730 -0.8 -5.3 glutamate--cysteine ligase compare
AO353_04365 -0.8 -3.4 recombinase XerD compare
AO353_10825 -0.8 -6.1 hypothetical protein compare
AO353_26680 -0.8 -3.0 hypothetical protein compare
AO353_05080 -0.8 -5.0 sulfate adenylyltransferase compare
AO353_00620 -0.8 -1.3 cytochrome C oxidase Cbb3 compare
AO353_20785 -0.8 -3.2 carbon storage regulator CsrA compare
AO353_13200 -0.8 -5.5 exoribonuclease R compare
AO353_21630 -0.8 -1.7 precorrin-4 C11-methyltransferase compare
AO353_03025 -0.8 -2.8 acetylornithine aminotransferase compare
AO353_14775 -0.8 -3.8 hypothetical protein compare
AO353_00875 -0.8 -4.7 transcriptional regulator compare
AO353_14595 -0.8 -4.6 carbonate dehydratase compare
AO353_21615 -0.8 -5.4 methionine synthase compare
AO353_01595 -0.8 -1.8 Flp pilus assembly protein CpaB compare
AO353_20630 -0.8 -4.1 SAM-dependent methyltransferase compare
AO353_09905 -0.8 -4.4 phosphate-binding protein compare
AO353_00605 -0.8 -3.5 cytochrome C oxidase Cbb3 compare
AO353_06275 -0.8 -1.4 DNA polymerase III subunit epsilon compare
AO353_17620 -0.8 -6.2 L-aspartate oxidase compare
AO353_03630 -0.8 -5.6 porin compare
AO353_02195 -0.8 -2.5 spermidine synthase compare
AO353_13245 -0.8 -3.4 hypothetical protein compare
AO353_10495 -0.7 -2.1 serine hydroxymethyltransferase compare
AO353_10560 -0.7 -2.6 hypothetical protein compare
AO353_14935 -0.7 -2.3 aminopeptidase compare
AO353_09660 -0.7 -1.6 hypothetical protein compare
AO353_14010 -0.7 -2.9 GntR family transcriptional regulator compare
AO353_15555 -0.7 -2.8 fumarylacetoacetase compare
AO353_21645 -0.7 -1.9 cobalt transporter compare
AO353_20170 -0.7 -2.8 trigger factor compare
AO353_07515 -0.7 -1.4 transporter compare
AO353_28425 -0.7 -2.3 TetR family transcriptional regulator compare
AO353_03365 -0.7 -4.4 transcriptional regulator compare
AO353_26055 -0.7 -1.7 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium Fumarate dibasic across organisms