Experiment set1IT075 for Rahnella sp. WP5

Compare to:

L-Serine nitrogen source; ShewMM media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS12400 -5.8 -4.0 RNA polymerase factor sigma-54 compare
EX31_RS05785 -5.2 -3.6 superoxide dismutase [Mn] compare
EX31_RS02520 -4.4 -5.3 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS09965 -4.4 -7.9 anthranilate phosphoribosyltransferase compare
EX31_RS23415 -4.3 -10.4 citrate synthase compare
EX31_RS20495 -4.3 -12.3 outer membrane protein assembly factor BamB compare
EX31_RS22750 -4.2 -6.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS03830 -4.2 -21.3 carbamoyl-phosphate synthase large subunit compare
EX31_RS02530 -4.0 -6.5 ABC transporter ATP-binding protein compare
EX31_RS23245 -4.0 -23.2 asparagine synthase B compare
EX31_RS18540 -4.0 -3.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS02515 -4.0 -7.1 PAS domain-containing protein compare
EX31_RS03695 -4.0 -6.4 3-isopropylmalate dehydratase small subunit compare
EX31_RS14180 -3.9 -18.4 argininosuccinate lyase compare
EX31_RS11440 -3.8 -9.2 histidinol dehydrogenase compare
EX31_RS15880 -3.8 -11.0 nitrogen regulation protein NR(I) compare
EX31_RS23490 -3.7 -3.6 cell envelope integrity protein TolA compare
EX31_RS18525 -3.7 -3.6 DNA translocase FtsK compare
EX31_RS03685 -3.7 -15.4 3-isopropylmalate dehydrogenase compare
EX31_RS03690 -3.6 -15.1 3-isopropylmalate dehydratase large subunit compare
EX31_RS03945 -3.6 -22.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS09855 -3.6 -5.9 orotidine-5'-phosphate decarboxylase compare
EX31_RS16860 -3.6 -20.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03940 -3.5 -13.4 homoserine kinase compare
EX31_RS22250 -3.5 -7.0 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS09970 -3.4 -10.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS15875 -3.4 -13.8 nitrogen regulation protein NR(II) compare
EX31_RS13275 -3.4 -12.1 diaminopimelate decarboxylase compare
EX31_RS03835 -3.4 -11.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS02690 -3.4 -8.1 pyrroline-5-carboxylate reductase compare
EX31_RS09980 -3.4 -8.4 tryptophan synthase subunit alpha compare
EX31_RS11445 -3.4 -10.5 histidinol-phosphate transaminase compare
EX31_RS13445 -3.4 -16.6 argininosuccinate synthase compare
EX31_RS12515 -3.3 -23.7 glutamate synthase large subunit compare
EX31_RS15005 -3.3 -14.0 dihydroxy-acid dehydratase compare
EX31_RS12510 -3.3 -12.1 FAD-dependent oxidoreductase compare
EX31_RS11470 -3.3 -5.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS15020 -3.3 -15.8 ketol-acid reductoisomerase compare
EX31_RS06595 -3.3 -3.8 electron transport complex subunit E compare
EX31_RS20175 -3.2 -7.6 cysteine synthase A compare
EX31_RS09955 -3.2 -10.7 anthranilate synthase component 1 compare
EX31_RS13160 -3.2 -12.2 amino-acid N-acetyltransferase compare
EX31_RS22245 -3.2 -5.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS09960 -3.2 -7.0 glutamine amidotransferase compare
EX31_RS20735 -3.1 -5.9 exodeoxyribonuclease V subunit beta compare
EX31_RS03935 -3.1 -13.2 threonine synthase compare
EX31_RS14340 -3.1 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS21895 -3.1 -18.9 phosphoribosylformylglycinamidine synthase compare
EX31_RS23440 -3.1 -3.6 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS14200 -3.1 -13.0 phosphoenolpyruvate carboxylase compare
EX31_RS11450 -3.1 -8.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS12825 -3.0 -7.7 ornithine carbamoyltransferase compare
EX31_RS16855 -3.0 -13.4 phosphoribosylamine--glycine ligase compare
EX31_RS13045 -2.9 -16.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS14190 -2.8 -8.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14185 -2.8 -6.7 acetylglutamate kinase compare
EX31_RS07590 -2.8 -3.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS22695 -2.8 -8.6 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS21850 -2.8 -3.2 pyridoxine 5'-phosphate synthase compare
EX31_RS15870 -2.7 -5.2 glutamate--ammonia ligase compare
EX31_RS11735 -2.7 -10.1 homoserine O-succinyltransferase compare
EX31_RS24385 -2.7 -6.2 dihydroorotase compare
EX31_RS14215 -2.7 -14.2 cystathionine gamma-synthase compare
EX31_RS09895 -2.7 -4.7 type I DNA topoisomerase compare
EX31_RS09975 -2.7 -9.9 tryptophan synthase subunit beta compare
EX31_RS07870 -2.5 -6.7 adenylyl-sulfate kinase compare
EX31_RS09890 -2.5 -12.6 HTH-type transcriptional regulator CysB compare
EX31_RS19655 -2.5 -6.5 beta-ketoacyl-ACP synthase I compare
EX31_RS09775 -2.5 -2.8 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS14310 -2.5 -5.9 6-phosphofructokinase compare
EX31_RS19570 -2.4 -12.1 amidophosphoribosyltransferase compare
EX31_RS10030 -2.4 -3.0 YciY family protein compare
EX31_RS07895 -2.3 -8.4 phosphoadenylyl-sulfate reductase compare
EX31_RS03250 -2.3 -7.6 RNA polymerase-binding protein DksA compare
EX31_RS04925 -2.3 -4.1 Fe-S biogenesis protein NfuA compare
EX31_RS20980 -2.3 -6.7 glutamate 5-kinase compare
EX31_RS25365 -2.3 -2.1 50S ribosomal protein L31 compare
EX31_RS07585 -2.2 -6.1 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS11465 -2.2 -7.9 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS02365 -2.1 -1.8 hypothetical protein compare
EX31_RS03955 -2.1 -7.6 two-component system response regulator ArcA compare
EX31_RS11455 -2.1 -4.1 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS03680 -2.1 -8.3 2-isopropylmalate synthase compare
EX31_RS14205 -2.1 -9.6 methylenetetrahydrofolate reductase compare
EX31_RS14335 -2.1 -2.8 serine O-acetyltransferase compare
EX31_RS18530 -2.0 -10.1 leucine-responsive transcriptional regulator Lrp compare
EX31_RS03480 -2.0 -4.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS19375 -2.0 -4.8 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS03400 -2.0 -6.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS06070 -1.9 -8.1 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS18095 -1.9 -5.8 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS06055 -1.9 -3.7 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS08150 -1.9 -9.8 inorganic triphosphatase compare
EX31_RS19420 -1.9 -3.1 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS11675 -1.9 -2.8 Holliday junction branch migration protein RuvA compare
EX31_RS15155 -1.9 -2.8 diaminopimelate epimerase compare
EX31_RS15010 -1.9 -8.5 threonine ammonia-lyase, biosynthetic compare
EX31_RS07900 -1.9 -10.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS22625 -1.8 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS07875 -1.8 -11.8 sulfate adenylyltransferase subunit CysN compare
EX31_RS25375 -1.8 -4.9 ilv operon leader peptide compare
EX31_RS22620 -1.8 -4.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS07955 -1.8 -12.3 GTP diphosphokinase compare
EX31_RS20975 -1.8 -5.4 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS07905 -1.7 -10.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS14500 -1.7 -7.5 orotate phosphoribosyltransferase compare
EX31_RS07880 -1.7 -10.4 sulfate adenylyltransferase subunit CysD compare
EX31_RS26075 -1.6 -1.5 hypothetical protein compare
EX31_RS18255 -1.6 -3.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS15540 -1.6 -2.5 SDR family oxidoreductase compare
EX31_RS01595 -1.6 -1.2 phage minor tail protein G compare
EX31_RS10100 -1.6 -2.5 two-component system response regulator RssB compare
EX31_RS07560 -1.6 -11.5 ATP-dependent chaperone ClpB compare
EX31_RS17790 -1.6 -2.8 citrate lyase acyl carrier protein compare
EX31_RS12785 -1.6 -7.7 aspartate carbamoyltransferase compare
EX31_RS19480 -1.6 -6.4 acetate kinase compare
EX31_RS23485 -1.5 -2.0 colicin uptake protein TolR compare
EX31_RS19205 -1.5 -2.8 50S ribosomal protein L25 compare
EX31_RS01620 -1.5 -2.1 DUF2190 family protein compare
EX31_RS19385 -1.5 -4.3 NADH-quinone oxidoreductase subunit L compare
EX31_RS22740 -1.5 -6.6 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS23455 -1.4 -3.0 succinate--CoA ligase subunit alpha compare
EX31_RS11435 -1.4 -4.7 ATP phosphoribosyltransferase compare
EX31_RS20220 -1.4 -4.0 sulfate/thiosulfate ABC transporter permease CysT compare
EX31_RS25215 -1.4 -2.3 polysulfide reductase NrfD compare
EX31_RS06065 -1.4 -5.2 phosphate ABC transporter permease PstC compare
EX31_RS05880 -1.4 -2.2 DNA-3-methyladenine glycosylase I compare
EX31_RS20180 -1.4 -1.7 phosphocarrier protein Hpr compare
EX31_RS11460 -1.4 -3.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS03285 -1.4 -3.4 pantoate--beta-alanine ligase compare
EX31_RS03020 -1.4 -3.4 AzlD domain-containing protein compare
EX31_RS25110 -1.3 -1.9 DUF2474 domain-containing protein compare
EX31_RS24715 -1.3 -6.3 L-serine ammonia-lyase compare
EX31_RS10115 -1.3 -5.7 formyltetrahydrofolate deformylase compare
EX31_RS10020 -1.3 -1.9 YciI family protein compare
EX31_RS08720 -1.3 -7.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS20190 -1.3 -1.3 PTS glucose transporter subunit IIA compare
EX31_RS19435 -1.3 -2.1 NADH-quinone oxidoreductase subunit A compare
EX31_RS11625 -1.3 -1.1 hypothetical protein compare
EX31_RS10955 -1.3 -2.3 AI-2E family transporter compare
EX31_RS23480 -1.3 -2.6 Tol-Pal system protein TolQ compare
EX31_RS17275 -1.3 -2.6 DUF72 domain-containing protein compare
EX31_RS07380 -1.3 -1.5 redox-regulated ATPase YchF compare
EX31_RS25140 -1.3 -1.5 AlpA family transcriptional regulator compare
EX31_RS19485 -1.3 -4.5 phosphate acetyltransferase compare
EX31_RS24390 -1.2 -2.7 antibiotic biosynthesis monooxygenase compare
EX31_RS24375 -1.2 -2.6 biofilm formation regulator BssS compare
EX31_RS01500 -1.2 -3.0 transcriptional regulator compare
EX31_RS20450 -1.2 -5.3 IMP dehydrogenase compare
EX31_RS03890 -1.2 -3.1 Na+/H+ antiporter NhaA compare
EX31_RS11815 -1.2 -6.3 glucose-6-phosphate isomerase compare
EX31_RS17025 -1.2 -3.4 FadR family transcriptional regulator compare
EX31_RS21020 -1.2 -1.7 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS03860 -1.2 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
EX31_RS03035 -1.2 -4.7 LysE family transporter compare
EX31_RS25400 -1.2 -2.2 transcriptional regulator compare
EX31_RS03085 -1.1 -4.9 hypothetical protein compare
EX31_RS14990 -1.1 -6.5 acetolactate synthase 2 catalytic subunit compare
EX31_RS11355 -1.1 -2.8 chemotaxis protein CheY compare
EX31_RS21805 -1.1 -1.6 anti-sigma-E factor RseA compare
EX31_RS06140 -1.1 -6.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS26000 -1.1 -2.1 GntR family transcriptional regulator compare
EX31_RS25070 -1.1 -1.8 DUF551 domain-containing protein compare
EX31_RS07800 -1.1 -5.1 recombinase RecA compare
EX31_RS11115 -1.1 -1.6 creatininase family protein compare
EX31_RS16425 -1.1 -2.0 DUF421 domain-containing protein compare
EX31_RS09790 -1.1 -2.2 autoinducer 2 ABC transporter permease LsrD compare
EX31_RS12875 -1.1 -2.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS06150 -1.1 -7.3 transcriptional regulator AsnC compare
EX31_RS00820 -1.0 -2.5 VOC family protein compare
EX31_RS09170 -1.0 -1.9 ABC transporter ATP-binding protein compare
EX31_RS15000 -1.0 -6.4 branched-chain amino acid transaminase compare
EX31_RS22715 -1.0 -1.7 arsenate reductase (glutaredoxin) compare
EX31_RS09820 -1.0 -2.2 fructose-6-phosphate aldolase compare
EX31_RS03220 -1.0 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS02525 -1.0 -3.8 ABC transporter permease compare
EX31_RS06325 -1.0 -3.6 pyrimidine (deoxy)nucleoside triphosphate diphosphatase compare
EX31_RS02565 -1.0 -1.5 3-oxoacyl-ACP synthase compare
EX31_RS01590 -1.0 -2.0 phage tail assembly protein T compare
EX31_RS01255 -1.0 -1.7 Crp/Fnr family transcriptional regulator compare
EX31_RS10430 -1.0 -3.0 5-oxoprolinase subunit PxpB compare
EX31_RS01805 -1.0 -0.8 hypothetical protein compare
EX31_RS14220 -1.0 -1.6 met regulon transcriptional regulator MetJ compare
EX31_RS19280 -1.0 -3.6 transcriptional regulator RcsB compare
EX31_RS17100 -1.0 -1.3 colicin immunity protein Cui compare
EX31_RS23460 -1.0 -4.9 cytochrome ubiquinol oxidase subunit I compare
EX31_RS01655 -1.0 -2.0 hypothetical protein compare
EX31_RS07200 -1.0 -3.7 FNR family transcription factor compare
EX31_RS14550 -1.0 -1.5 Trk system potassium transporter TrkH compare
EX31_RS01090 -0.9 -2.1 metal ABC transporter permease compare
EX31_RS00585 -0.9 -2.0 multidrug efflux SMR transporter compare
EX31_RS24395 -0.9 -2.5 ribonuclease E compare
EX31_RS23495 -0.9 -3.7 Tol-Pal system protein TolB compare
EX31_RS22320 -0.9 -5.2 ammonium transporter AmtB compare
EX31_RS06060 -0.9 -2.2 phosphate ABC transporter permease PstA compare
EX31_RS09080 -0.9 -1.2 LysR family transcriptional regulator compare
EX31_RS15425 -0.9 -2.2 DUF2461 family protein compare
EX31_RS25125 -0.9 -2.5 thr operon leader peptide compare
EX31_RS04105 -0.9 -1.3 helix-turn-helix domain-containing protein compare
EX31_RS09700 -0.9 -2.0 GlpM family protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Serine in Rahnella sp. WP5

For nitrogen source L-Serine across organisms