Experiment set1IT075 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 10 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -10.6 -4.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05280 -10.2 -7.0 COG1361 S-layer family protein compare
MMP_RS07845 -9.0 -2.4 LL-diaminopimelate aminotransferase compare
MMP_RS07075 -8.7 -4.0 phosphomannomutase/phosphoglucomutase compare
MMP_RS03580 -8.5 -3.2 signal recognition particle-docking protein FtsY compare
MMP_RS03025 -8.3 -4.8 molybdenum cofactor guanylyltransferase compare
MMP_RS06285 -8.3 -2.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04710 -8.3 -2.2 hypothetical protein compare
MMP_RS06700 -8.0 -10.8 hypothetical protein compare
MMP_RS01795 -8.0 -2.1 methanogenesis marker 6 protein compare
MMP_RS06400 -7.9 -2.1 4Fe-4S binding protein compare
MMP_RS01325 -7.9 -2.4 dihydroneopterin aldolase family protein compare
MMP_RS06020 -7.9 -4.0 archaeoflavoprotein AfpA compare
MMP_RS08745 -7.8 -5.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01265 -7.8 -3.4 hypothetical protein compare
MMP_RS02145 -7.6 -10.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS06895 -7.5 -2.0 selenocysteine-specific translation elongation factor compare
MMP_RS08650 -7.5 -3.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08195 -7.4 -9.8 hypothetical protein compare
MMP_RS07380 -7.1 -2.5 transcription elongation factor Spt5 compare
MMP_RS05290 -7.1 -8.3 TetR/AcrR family transcriptional regulator compare
MMP_RS06670 -7.1 -6.6 glucose-6-phosphate isomerase compare
MMP_RS06295 -7.0 -8.3 methanogenesis marker 14 protein compare
MMP_RS00130 -6.9 -1.1 nickel-responsive transcriptional regulator NikR compare
MMP_RS01020 -6.9 -1.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03445 -6.8 -1.0 methanogenesis marker 17 protein compare
MMP_RS07630 -6.7 -1.8 ATP-binding cassette domain-containing protein compare
MMP_RS08460 -6.6 -2.5 proteasome-activating nucleotidase compare
MMP_RS05285 -6.6 -7.5 MMPL family transporter compare
MMP_RS07820 -6.6 -4.8 UPF0104 family protein compare
MMP_RS04780 -6.5 -2.8 ribonuclease P compare
MMP_RS05345 -6.5 -6.3 hypothetical protein compare
MMP_RS08720 -6.5 -2.0 4Fe-4S binding protein compare
MMP_RS06110 -6.5 -3.0 ATP-dependent protease LonB compare
MMP_RS05515 -6.5 -4.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01985 -6.4 -6.0 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS06680 -6.4 -8.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06355 -6.4 -2.5 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01500 -6.4 -2.6 CBS domain-containing protein compare
MMP_RS06625 -6.4 -2.7 DNA primase compare
MMP_RS02280 -6.3 -1.0 DUF211 domain-containing protein compare
MMP_RS06105 -6.2 -7.9 hydrogenase maturation peptidase HycI compare
MMP_RS03315 -6.1 -1.6 ferrous iron transport protein A compare
MMP_RS06230 -6.1 -2.5 helix-turn-helix domain-containing protein compare
MMP_RS00305 -5.9 -2.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS06685 -5.9 -9.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS04870 -5.9 -5.4 TIGR02253 family HAD-type hydrolase compare
MMP_RS03015 -5.9 -7.6 GTP 3' 8-cyclase MoaA compare
MMP_RS01925 -5.9 -12.0 DUF1616 domain-containing protein compare
MMP_RS03700 -5.9 -9.9 sodium:proton antiporter compare
MMP_RS01885 -5.8 -9.1 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07635 -5.7 -6.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00300 -5.7 -0.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01005 -5.6 -1.2 riboflavin synthase compare
MMP_RS05640 -5.6 -7.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01380 -5.6 -4.1 PHP domain-containing protein compare
MMP_RS01755 -5.6 -1.2 DUF2097 domain-containing protein compare
MMP_RS07350 -5.6 -2.4 preprotein translocase subunit Sec61beta compare
MMP_RS01220 -5.6 -6.4 hypothetical protein compare
MMP_RS08300 -5.5 -1.4 metal-sulfur cluster assembly factor compare
MMP_RS07330 -5.4 -15.6 membrane protein compare
MMP_RS03475 -5.4 -0.8 hypothetical protein compare
MMP_RS01890 -5.4 -6.2 nucleotide sugar dehydrogenase compare
MMP_RS04685 -5.4 -3.6 DUF126 domain-containing protein compare
MMP_RS08440 -5.4 -3.2 cell division protein SepF compare
MMP_RS03110 -5.3 -7.2 glycosyltransferase family 2 protein compare
MMP_RS08635 -5.2 -2.0 UbiA family prenyltransferase compare
MMP_RS01975 -5.2 -14.9 hypothetical protein compare
MMP_RS00515 -5.2 -1.1 DUF655 domain-containing protein compare
MMP_RS01905 -5.2 -14.5 glycosyltransferase compare
MMP_RS07005 -5.1 -0.8 4Fe-4S binding protein compare
MMP_RS01225 -5.0 -4.7 DUF5379 domain-containing protein compare
MMP_RS00695 -5.0 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS03640 -4.9 -3.9 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06120 -4.9 -2.3 UPF0147 family protein compare
MMP_RS05250 -4.9 -2.0 NFYB/HAP3 family transcription factor subunit compare
MMP_RS02800 -4.9 -6.4 nucleotidyltransferase domain-containing protein compare
MMP_RS06630 -4.9 -1.1 UPF0058 family protein compare
MMP_RS01900 -4.8 -16.7 hypothetical protein compare
MMP_RS01880 -4.8 -8.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS08715 -4.7 -2.3 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06315 -4.7 -1.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS08595 -4.6 -1.0 flagellar protein C compare
MMP_RS02900 -4.6 -0.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07445 -4.5 -4.5 helix-turn-helix domain-containing protein compare
MMP_RS06885 -4.5 -2.8 50S ribosome-binding GTPase compare
MMP_RS02875 -4.4 -5.0 chorismate pyruvate-lyase family protein compare
MMP_RS01800 -4.4 -4.0 TIGR00303 family protein compare
MMP_RS01960 -4.3 -0.9 hypothetical protein compare
MMP_RS01875 -4.2 -9.8 N-acetyltransferase compare
MMP_RS06350 -4.2 -5.4 HesA/MoeB/ThiF family protein compare
MMP_RS04890 -4.2 -0.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS00685 -4.0 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00335 -4.0 -4.6 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS05845 -4.0 -2.0 tRNA-intron lyase compare
MMP_RS08320 -3.9 -5.3 molybdopterin molybdotransferase MoeA compare
MMP_RS01910 -3.8 -10.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS08840 -3.8 -7.5 class I SAM-dependent methyltransferase compare
MMP_RS05635 -3.7 -7.7 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS01610 -3.7 -2.5 hypothetical protein compare
MMP_RS07710 -3.6 -7.0 cell division protein FtsZ compare
MMP_RS06940 -3.5 -3.7 polyprenyl diphosphate synthase compare
MMP_RS00985 -3.5 -5.2 CDC48 family AAA ATPase compare
MMP_RS06035 -3.5 -5.5 glycosyltransferase family 2 protein compare
MMP_RS08590 -3.4 -4.3 flagellin compare
MMP_RS01915 -3.4 -13.5 DUF354 domain-containing protein compare
MMP_RS01895 -3.4 -11.5 flippase compare
MMP_RS07875 -3.3 -5.0 hypothetical protein compare
MMP_RS03400 -3.3 -3.1 archease compare
MMP_RS01970 -3.3 -12.2 TIGR04279 domain-containing protein compare
MMP_RS07200 -3.3 -5.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS06730 -3.2 -1.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS00915 -3.2 -6.2 DUF116 domain-containing protein compare
MMP_RS07525 -3.1 -5.7 4Fe-4S binding protein compare
MMP_RS03960 -3.1 -1.1 hypothetical protein compare
MMP_RS02135 -3.1 -3.3 DUF5612 domain-containing protein compare
MMP_RS01725 -3.1 -3.9 class I SAM-dependent methyltransferase family protein compare
MMP_RS01955 -3.0 -3.4 hypothetical protein compare
MMP_RS02100 -3.0 -5.0 metallophosphoesterase compare
MMP_RS03600 -3.0 -2.0 triose-phosphate isomerase compare
MMP_RS03155 -3.0 -6.3 precorrin-6A reductase compare
MMP_RS04875 -3.0 -3.2 energy-converting hydrogenase B subunit P compare
MMP_RS02240 -3.0 -3.4 methanogenesis marker 7 protein compare
MMP_RS04090 -3.0 -2.1 hypothetical protein compare
MMP_RS06270 -2.9 -4.1 TIGR00300 family protein compare
MMP_RS01720 -2.8 -2.1 replication factor C large subunit compare
MMP_RS05430 -2.8 -2.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS06130 -2.8 -3.3 peptidylprolyl isomerase compare
MMP_RS05525 -2.7 -3.8 calcium/sodium antiporter compare
MMP_RS08605 -2.7 -5.1 flagellar protein E compare
MMP_RS06925 -2.7 -2.4 ribonuclease VapC4 compare
MMP_RS00110 -2.7 -2.6 hypothetical protein compare
MMP_RS07420 -2.6 -2.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS02165 -2.6 -7.7 tRNA-dihydrouridine synthase compare
MMP_RS02885 -2.6 -9.9 molybdopterin biosynthesis protein compare
MMP_RS03035 -2.6 -3.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06705 -2.5 -4.7 formate/nitrite transporter family protein compare
MMP_RS05580 -2.5 -11.8 glycosyltransferase compare
MMP_RS07545 -2.5 -1.2 HTH domain-containing protein compare
MMP_RS00120 -2.5 -4.8 LysR family transcriptional regulator compare
MMP_RS06345 -2.5 -7.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS05925 -2.5 -3.0 small nuclear ribonucleoprotein compare
MMP_RS08155 -2.4 -5.4 hypothetical protein compare
MMP_RS04215 -2.4 -6.5 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01920 -2.4 -11.9 glycosyltransferase family 2 protein compare
MMP_RS08645 -2.3 -5.8 UPF0179 family protein compare
MMP_RS01665 -2.3 -3.5 DUF2111 domain-containing protein compare
MMP_RS03305 -2.3 -5.5 winged helix-turn-helix domain-containing protein compare
MMP_RS01365 -2.3 -1.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS02870 -2.3 -4.9 hypothetical protein compare
MMP_RS07795 -2.3 -8.6 site-2 protease family protein compare
MMP_RS02195 -2.3 -3.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06375 -2.3 -6.4 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06175 -2.3 -4.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS07090 -2.3 -7.1 tRNA (adenine-N1)-methyltransferase compare
MMP_RS07600 -2.2 -2.5 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS05920 -2.2 -0.7 50S ribosomal protein L37e compare
MMP_RS08070 -2.2 -5.6 DUF2096 domain-containing protein compare
MMP_RS04720 -2.2 -2.6 DedA family protein compare
MMP_RS07385 -2.1 -1.7 protein translocase SEC61 complex subunit gamma compare
MMP_RS04585 -2.1 -8.1 AIR synthase related protein compare
MMP_RS08600 -2.1 -2.0 flagellar protein D compare
MMP_RS08210 -2.1 -2.3 phosphatidylglycerophosphatase A compare
MMP_RS01150 -2.1 -3.4 aldo/keto reductase compare
MMP_RS08915 -2.1 -1.7 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS01455 -2.1 -5.7 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01940 -2.0 -4.3 MoxR family ATPase compare
MMP_RS01385 -2.0 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS02355 -2.0 -2.2 30S ribosomal protein S27ae compare
MMP_RS06600 -2.0 -0.9 class III signal peptide-containing protein compare
MMP_RS01335 -1.9 -2.1 prefoldin subunit beta compare
MMP_RS03020 -1.9 -3.1 peptidylprolyl isomerase compare
MMP_RS01945 -1.8 -6.1 DUF4350 domain-containing protein compare
MMP_RS01445 -1.8 -5.6 hypothetical protein compare
MMP_RS07390 -1.8 -1.2 cell division protein FtsZ compare
MMP_RS03385 -1.8 -1.1 cation diffusion facilitator family transporter compare
MMP_RS01545 -1.8 -1.1 CBS domain-containing protein compare
MMP_RS07365 -1.8 -7.5 2-phosphoglycerate kinase compare
MMP_RS03390 -1.8 -5.8 malate dehydrogenase compare
MMP_RS04605 -1.7 -3.0 cobalt ECF transporter T component CbiQ compare
MMP_RS05440 -1.7 -6.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS01930 -1.7 -9.0 hypothetical protein compare
MMP_RS01935 -1.7 -7.8 DUF58 domain-containing protein compare
MMP_RS05445 -1.7 -4.7 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS01950 -1.6 -6.6 hypothetical protein compare
MMP_RS04775 -1.6 -2.2 adenosylhomocysteinase compare
MMP_RS07580 -1.6 -1.2 DUF356 domain-containing protein compare
MMP_RS02110 -1.6 -1.6 hypothetical protein compare
MMP_RS08435 -1.6 -1.9 Era-like GTP-binding protein compare
MMP_RS08890 -1.6 -8.8 glycosyltransferase family 4 protein compare
MMP_RS05450 -1.6 -3.4 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS04695 -1.5 -6.1 selenide water dikinase SelD compare
MMP_RS07605 -1.5 -2.0 diadenylate cyclase compare
MMP_RS00620 -1.5 -3.6 4Fe-4S binding protein compare
MMP_RS07735 -1.5 -0.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01750 -1.5 -7.2 DUF63 family protein compare
MMP_RS06760 -1.5 -1.3 hypothetical protein compare
MMP_RS02130 -1.5 -3.7 zinc metalloprotease HtpX compare
MMP_RS00060 -1.4 -1.5 3-dehydroquinate synthase II compare
MMP_RS07625 -1.4 -2.1 cobalt ECF transporter T component CbiQ compare


Specific Phenotypes

For 5 genes in this experiment

For mixed community Ethanolamine in Methanococcus maripaludis S2

For mixed community Ethanolamine across organisms