Experiment set1IT074 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Potassium acetate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_10670 -4.6 -4.4 shikimate dehydrogenase compare
AO353_27735 -4.2 -5.7 isocitrate lyase compare
AO353_09040 -4.0 -2.8 diaminopimelate epimerase compare
AO353_12070 -4.0 -5.4 imidazoleglycerol-phosphate dehydratase compare
AO353_13070 -3.9 -5.3 phosphoserine phosphatase compare
AO353_10815 -3.9 -7.5 carbonate dehydratase conserved
AO353_00430 -3.8 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_02550 -3.7 -5.1 TetR family transcriptional regulator compare
AO353_07075 -3.6 -4.3 elongation factor Tu compare
AO353_07230 -3.6 -13.4 anthranilate synthase compare
AO353_12090 -3.6 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05115 -3.6 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20625 -3.5 -3.4 3-isopropylmalate dehydratase compare
AO353_12085 -3.5 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08185 -3.5 -9.0 methionine biosynthesis protein MetW compare
AO353_08475 -3.5 -7.7 phosphoserine phosphatase compare
AO353_20635 -3.4 -11.2 3-isopropylmalate dehydrogenase compare
AO353_05625 -3.4 -2.3 transcription elongation factor GreA compare
AO353_10035 -3.4 -7.9 LysR family transcriptional regulator compare
AO353_08470 -3.4 -4.0 RNA pyrophosphohydrolase compare
AO353_08345 -3.3 -7.4 dihydroxy-acid dehydratase compare
AO353_07210 -3.3 -5.1 indole-3-glycerol-phosphate synthase compare
AO353_20665 -3.3 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20695 -3.3 -5.9 O-succinylhomoserine sulfhydrylase compare
AO353_22800 -3.3 -3.8 sulfite reductase compare
AO353_02075 -3.3 -9.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_14505 -3.3 -10.2 ketol-acid reductoisomerase compare
AO353_11850 -3.2 -4.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_12365 -3.2 -3.8 phosphoribosyl-AMP cyclohydrolase compare
AO353_05110 -3.2 -9.6 histidinol dehydrogenase compare
AO353_20620 -3.2 -6.7 isopropylmalate isomerase compare
AO353_13165 -3.2 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
AO353_00310 -3.1 -8.3 transaldolase compare
AO353_12515 -3.1 -17.9 glutamate synthase compare
AO353_12075 -3.1 -7.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08180 -3.1 -11.4 homoserine O-acetyltransferase compare
AO353_07475 -3.1 -8.2 sulfurase compare
AO353_07220 -3.0 -7.2 anthranilate synthase compare
AO353_07155 -3.0 -6.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_02555 -3.0 -13.0 histidine kinase compare
AO353_02710 -3.0 -11.9 (p)ppGpp synthetase compare
AO353_02070 -2.9 -6.8 prephenate dehydratase compare
AO353_07560 -2.9 -11.9 malate synthase G compare
AO353_20540 -2.9 -7.5 aromatic amino acid aminotransferase compare
AO353_12520 -2.9 -10.9 glutamate synthase compare
AO353_04155 -2.9 -10.5 ornithine carbamoyltransferase compare
AO353_12105 -2.8 -5.1 peptidase S41 compare
AO353_11775 -2.8 -7.3 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_19060 -2.8 -4.3 CysB family transcriptional regulator compare
AO353_12115 -2.8 -3.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13100 -2.8 -1.9 GTPase RsgA compare
AO353_03020 -2.8 -8.0 arginine N-succinyltransferase compare
AO353_07480 -2.8 -11.4 LysR family transcriptional regulator compare
AO353_14495 -2.8 -10.2 acetolactate synthase 3 catalytic subunit compare
AO353_09905 -2.8 -9.0 phosphate-binding protein compare
AO353_14775 -2.8 -5.8 hypothetical protein compare
AO353_09865 -2.7 -10.5 hypothetical protein compare
AO353_23610 -2.7 -7.5 serine/threonine protein phosphatase conserved
AO353_08685 -2.7 -8.0 N-acetylglutamate synthase compare
AO353_09000 -2.7 -5.1 argininosuccinate lyase compare
AO353_04105 -2.7 -7.7 argininosuccinate synthase compare
AO353_11750 -2.7 -2.6 ATPase compare
AO353_14115 -2.7 -5.4 gamma-glutamyl kinase compare
AO353_00515 -2.6 -4.0 hypothetical protein compare
AO353_07215 -2.6 -7.0 anthranilate phosphoribosyltransferase compare
AO353_05075 -2.6 -9.6 adenylylsulfate kinase compare
AO353_08885 -2.6 -15.0 polyphosphate kinase compare
AO353_27710 -2.6 -2.5 DNA repair protein compare
AO353_20565 -2.6 -2.0 tRNA-Ala compare
AO353_14380 -2.6 -5.2 pantoate--beta-alanine ligase compare
AO353_08510 -2.6 -4.6 3-phosphoglycerate dehydrogenase compare
AO353_06455 -2.6 -3.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_11075 -2.5 -14.2 acetyl-CoA hydrolase conserved
AO353_15830 -2.5 -3.5 transcriptional regulator compare
AO353_10455 -2.5 -1.7 tRNA modification GTPase MnmE compare
AO353_20175 -2.5 -3.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_10710 -2.5 -5.7 tryptophan synthase subunit beta compare
AO353_15925 -2.5 -11.6 2-isopropylmalate synthase compare
AO353_14500 -2.5 -6.5 acetolactate synthase 3 regulatory subunit compare
AO353_12360 -2.5 -7.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_10025 -2.5 -12.4 pyruvate carboxylase subunit B compare
AO353_19360 -2.5 -3.6 peroxiredoxin compare
AO353_28425 -2.5 -3.7 TetR family transcriptional regulator compare
AO353_16835 -2.4 -2.9 LuxR family transcriptional regulator compare
AO353_08170 -2.4 -4.6 hypothetical protein compare
AO353_08015 -2.4 -6.4 5,10-methylenetetrahydrofolate reductase compare
AO353_10030 -2.4 -9.5 pyruvate carboxylase subunit A compare
AO353_05690 -2.4 -4.2 SsrA-binding protein compare
AO353_09240 -2.4 -3.6 acetylglutamate kinase compare
AO353_08595 -2.3 -8.9 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO353_07315 -2.3 -2.3 rRNA methyltransferase compare
AO353_09890 -2.3 -5.4 phosphate ABC transporter ATP-binding protein compare
AO353_03590 -2.3 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_14370 -2.3 -6.4 glucose-6-phosphate isomerase compare
AO353_10705 -2.3 -4.9 tryptophan synthase subunit alpha compare
AO353_04190 -2.3 -2.7 glycerol-3-phosphate dehydrogenase compare
AO353_06550 -2.3 -8.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase conserved
AO353_20200 -2.3 -3.7 peptidylprolyl isomerase compare
AO353_16310 -2.3 -8.6 phosphoenolpyruvate carboxylase compare
AO353_13685 -2.2 -5.3 3-dehydroquinate dehydratase compare
AO353_03715 -2.2 -3.0 H-NS histone compare
AO353_08780 -2.2 -7.0 5-formyltetrahydrofolate cyclo-ligase compare
AO353_15900 -2.2 -2.6 GTP-binding protein compare
AO353_02250 -2.1 -3.7 chorismate synthase compare
AO353_04175 -2.1 -4.4 glycerol uptake facilitator GlpF compare
AO353_04035 -2.1 -4.4 exclusion suppressor FxsA compare
AO353_03670 -2.1 -5.1 ornithine acetyltransferase compare
AO353_08465 -2.1 -10.6 phosphoenolpyruvate-protein phosphotransferase compare
AO353_04825 -2.1 -6.0 hypothetical protein compare
AO353_13140 -2.0 -5.2 tRNA dimethylallyltransferase compare
AO353_08165 -2.0 -2.4 pyrroline-5-carboxylate reductase compare
AO353_14385 -2.0 -5.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_07470 -2.0 -9.1 acetylornithine aminotransferase conserved
AO353_00750 -2.0 -4.3 GntR family transcriptional regulator compare
AO353_06365 -2.0 -11.0 hypothetical protein compare
AO353_06040 -2.0 -3.6 exodeoxyribonuclease V subunit alpha compare
AO353_09860 -2.0 -9.9 histidine kinase compare
AO353_00825 -2.0 -3.3 porin compare
AO353_12500 -2.0 -1.9 shikimate kinase compare
AO353_09015 -2.0 -3.8 DNA-binding protein compare
AO353_11730 -1.9 -8.1 glutamate--cysteine ligase compare
AO353_06045 -1.9 -6.8 exodeoxyribonuclease V subunit beta compare
AO353_09875 -1.9 -1.2 hypothetical protein compare
AO353_26945 -1.9 -2.5 transcriptional regulator compare
AO353_18540 -1.9 -3.3 pseudouridine synthase compare
AO353_05080 -1.9 -9.0 sulfate adenylyltransferase compare
AO353_14150 -1.9 -2.2 peptidylprolyl isomerase compare
AO353_01780 -1.8 -9.1 heat-shock protein Hsp90 compare
AO353_11770 -1.8 -1.8 molecular chaperone Hsp33 compare
AO353_04835 -1.8 -9.5 fusaric acid resistance protein compare
AO353_20185 -1.8 -5.9 DNA-binding protein compare
AO353_15185 -1.8 -4.8 ATPase compare
AO353_29280 -1.8 -2.6 hypothetical protein compare
AO353_23590 -1.8 -2.5 ArsR family transcriptional regulator compare
AO353_08590 -1.7 -8.5 glutamine synthetase compare
AO353_06775 -1.7 -6.0 dTDP-4-dehydrorhamnose reductase compare
AO353_10065 -1.7 -6.7 hypothetical protein compare
AO353_09050 -1.7 -3.8 recombinase XerC compare
AO353_24405 -1.7 -1.9 ArsR family transcriptional regulator compare
AO353_14585 -1.7 -4.7 ribosomal-protein-alanine acetyltransferase compare
AO353_00460 -1.7 -3.2 TetR family transcriptional regulator compare
AO353_05105 -1.7 -8.3 histidinol-phosphate aminotransferase compare
AO353_20810 -1.7 -2.6 hypothetical protein compare
AO353_26045 -1.7 -2.5 hypothetical protein compare
AO353_01375 -1.7 -6.6 phosphate acyltransferase compare
AO353_06390 -1.7 -4.8 magnesium transporter compare
AO353_09885 -1.7 -2.1 transcriptional regulator PhoU compare
AO353_18135 -1.7 -2.7 hypothetical protein compare
AO353_09060 -1.6 -2.6 hypothetical protein compare
AO353_06050 -1.6 -5.7 exodeoxyribonuclease V subunit gamma compare
AO353_08440 -1.6 -3.4 hypothetical protein compare
AO353_05695 -1.6 -9.4 transcriptional regulator PdhR compare
AO353_03025 -1.6 -5.1 acetylornithine aminotransferase compare
AO353_17165 -1.6 -2.9 ATP-dependent helicase compare
AO353_02440 -1.6 -9.1 peptidase S41 compare
AO353_04180 -1.6 -6.3 glycerol kinase compare
AO353_24340 -1.6 -1.8 TetR family transcriptional regulator compare
AO353_29145 -1.6 -3.9 HxlR family transcriptional regulator compare
AO353_06495 -1.6 -4.0 gamma-glutamyl phosphate reductase compare
AO353_03015 -1.6 -3.6 arginine N-succinyltransferase compare
AO353_08100 -1.6 -3.4 chemotaxis protein CheY compare
AO353_08265 -1.6 -4.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_15555 -1.6 -4.3 fumarylacetoacetase compare
AO353_17625 -1.6 -7.1 RNA polymerase subunit sigma compare
AO353_20800 -1.6 -1.3 hypothetical protein compare
AO353_12240 -1.6 -4.5 histidine utilization repressor compare
AO353_27130 -1.5 -2.2 hypothetical protein compare
AO353_09900 -1.5 -7.0 phosphate ABC transporter permease compare
AO353_07505 -1.5 -6.8 dethiobiotin synthetase compare
AO353_15490 -1.5 -2.0 hypothetical protein compare
AO353_26835 -1.5 -2.7 transcriptional regulator compare
AO353_04840 -1.5 -7.5 RND transporter compare
AO353_08505 -1.5 -8.0 FAD-linked oxidase compare
AO353_26840 -1.5 -2.7 RND transporter compare
AO353_03585 -1.5 -2.5 ATP-dependent DNA helicase RuvA compare
AO353_27665 -1.5 -6.5 arginyl-tRNA-protein transferase compare
AO353_09950 -1.5 -4.2 aspartate ammonia-lyase compare
AO353_08910 -1.5 -1.8 hypothetical protein compare
AO353_16350 -1.5 -3.4 SAM-dependent methyltransferase compare
AO353_13720 -1.5 -9.1 arginine decarboxylase compare
AO353_15875 -1.4 -4.1 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_16195 -1.4 -1.5 DNA mismatch repair protein MutT compare
AO353_09485 -1.4 -3.8 hypothetical protein compare
AO353_13640 -1.4 -3.8 histidine kinase compare
AO353_07180 -1.4 -5.3 zinc-binding protein conserved
AO353_18560 -1.4 -1.7 class I peptide chain release factor compare
AO353_03580 -1.4 -3.1 ATP-dependent DNA helicase RuvB compare
AO353_14030 -1.4 -7.5 ABC transporter ATP-binding protein compare
AO353_03360 -1.4 -5.9 glucose-6-phosphate dehydrogenase compare
AO353_00490 -1.4 -2.2 PasA protein compare
AO353_26845 -1.4 -7.0 acriflavine resistance protein B compare
AO353_20660 -1.4 -3.4 pseudouridine synthase compare
AO353_15785 -1.4 -6.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_28990 -1.4 -4.8 LOG family protein compare
AO353_07515 -1.4 -1.6 transporter compare
AO353_02975 -1.4 -2.2 aspartate kinase compare
AO353_08485 -1.4 -8.9 threonine dehydratase compare
AO353_23405 -1.4 -1.5 hypothetical protein compare
AO353_19090 -1.4 -2.2 MarR family transcriptional regulator compare
AO353_06415 -1.4 -3.0 hypothetical protein compare


Specific Phenotypes

For 21 genes in this experiment

For carbon source Potassium acetate in Pseudomonas fluorescens FW300-N2E3

For carbon source Potassium acetate across organisms