Experiment set1IT074 for Rahnella sp. WP5

Compare to:

L-Serine nitrogen source; ShewMM media; no shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS12400 -5.7 -5.6 RNA polymerase factor sigma-54 compare
EX31_RS02530 -5.1 -6.1 ABC transporter ATP-binding protein compare
EX31_RS14185 -4.9 -10.0 acetylglutamate kinase compare
EX31_RS22625 -4.9 -4.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS23415 -4.9 -8.7 citrate synthase compare
EX31_RS03835 -4.8 -10.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS15880 -4.6 -10.6 nitrogen regulation protein NR(I) compare
EX31_RS02515 -4.6 -6.2 PAS domain-containing protein compare
EX31_RS03695 -4.6 -6.8 3-isopropylmalate dehydratase small subunit compare
EX31_RS20495 -4.6 -12.8 outer membrane protein assembly factor BamB compare
EX31_RS18540 -4.5 -3.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS14180 -4.5 -18.9 argininosuccinate lyase compare
EX31_RS22750 -4.5 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS12825 -4.4 -10.1 ornithine carbamoyltransferase compare
EX31_RS03685 -4.3 -17.3 3-isopropylmalate dehydrogenase compare
EX31_RS03935 -4.3 -14.6 threonine synthase compare
EX31_RS11460 -4.2 -5.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS02690 -4.2 -8.5 pyrroline-5-carboxylate reductase compare
EX31_RS23245 -4.1 -23.6 asparagine synthase B compare
EX31_RS14190 -4.1 -12.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS03830 -4.1 -22.0 carbamoyl-phosphate synthase large subunit compare
EX31_RS15020 -4.1 -18.6 ketol-acid reductoisomerase compare
EX31_RS13445 -4.0 -19.9 argininosuccinate synthase compare
EX31_RS03690 -4.0 -15.4 3-isopropylmalate dehydratase large subunit compare
EX31_RS16860 -4.0 -23.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS02520 -3.9 -6.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS11470 -3.9 -5.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS11440 -3.8 -10.1 histidinol dehydrogenase compare
EX31_RS12515 -3.8 -28.1 glutamate synthase large subunit compare
EX31_RS11735 -3.7 -12.6 homoserine O-succinyltransferase compare
EX31_RS03945 -3.7 -24.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS15005 -3.7 -18.0 dihydroxy-acid dehydratase compare
EX31_RS22250 -3.6 -6.8 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS11450 -3.5 -8.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS07590 -3.5 -2.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS14500 -3.5 -10.0 orotate phosphoribosyltransferase compare
EX31_RS12510 -3.5 -14.7 FAD-dependent oxidoreductase compare
EX31_RS13275 -3.5 -14.7 diaminopimelate decarboxylase compare
EX31_RS09980 -3.4 -8.4 tryptophan synthase subunit alpha compare
EX31_RS13160 -3.4 -14.2 amino-acid N-acetyltransferase compare
EX31_RS14200 -3.4 -15.3 phosphoenolpyruvate carboxylase compare
EX31_RS15875 -3.4 -14.7 nitrogen regulation protein NR(II) compare
EX31_RS09975 -3.3 -10.6 tryptophan synthase subunit beta compare
EX31_RS09970 -3.3 -10.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS22695 -3.3 -11.2 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS14340 -3.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS21895 -3.3 -20.3 phosphoribosylformylglycinamidine synthase compare
EX31_RS24385 -3.3 -6.5 dihydroorotase compare
EX31_RS22245 -3.2 -5.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS05785 -3.2 -4.8 superoxide dismutase [Mn] compare
EX31_RS03940 -3.2 -13.3 homoserine kinase compare
EX31_RS16855 -3.2 -16.0 phosphoribosylamine--glycine ligase compare
EX31_RS14335 -3.1 -2.2 serine O-acetyltransferase compare
EX31_RS09855 -3.1 -6.2 orotidine-5'-phosphate decarboxylase compare
EX31_RS20175 -3.1 -9.6 cysteine synthase A compare
EX31_RS15870 -3.1 -4.7 glutamate--ammonia ligase compare
EX31_RS18095 -3.1 -8.6 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS19570 -3.1 -15.8 amidophosphoribosyltransferase compare
EX31_RS20980 -3.0 -8.2 glutamate 5-kinase compare
EX31_RS14215 -3.0 -16.3 cystathionine gamma-synthase compare
EX31_RS14205 -3.0 -12.8 methylenetetrahydrofolate reductase compare
EX31_RS07895 -2.9 -10.4 phosphoadenylyl-sulfate reductase compare
EX31_RS09955 -2.9 -10.4 anthranilate synthase component 1 compare
EX31_RS07585 -2.8 -8.5 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS07955 -2.8 -17.3 GTP diphosphokinase compare
EX31_RS13045 -2.8 -16.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS06055 -2.8 -4.6 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS09890 -2.8 -14.2 HTH-type transcriptional regulator CysB compare
EX31_RS09965 -2.8 -8.2 anthranilate phosphoribosyltransferase compare
EX31_RS09960 -2.7 -7.4 glutamine amidotransferase compare
EX31_RS03250 -2.7 -11.2 RNA polymerase-binding protein DksA compare
EX31_RS11445 -2.7 -10.1 histidinol-phosphate transaminase compare
EX31_RS18530 -2.7 -14.7 leucine-responsive transcriptional regulator Lrp compare
EX31_RS23440 -2.7 -4.4 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS20975 -2.6 -9.1 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS07870 -2.6 -9.8 adenylyl-sulfate kinase compare
EX31_RS14310 -2.5 -6.1 6-phosphofructokinase compare
EX31_RS12785 -2.5 -11.3 aspartate carbamoyltransferase compare
EX31_RS18525 -2.5 -5.0 DNA translocase FtsK compare
EX31_RS11455 -2.5 -4.8 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS11465 -2.4 -8.4 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS07475 -2.3 -2.1 hypothetical protein compare
EX31_RS06070 -2.3 -10.0 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS03680 -2.3 -9.2 2-isopropylmalate synthase compare
EX31_RS22620 -2.2 -7.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS23495 -2.2 -7.7 Tol-Pal system protein TolB compare
EX31_RS20190 -2.2 -2.5 PTS glucose transporter subunit IIA compare
EX31_RS06060 -2.2 -4.9 phosphate ABC transporter permease PstA compare
EX31_RS15010 -2.2 -10.6 threonine ammonia-lyase, biosynthetic compare
EX31_RS07900 -2.1 -13.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS08150 -2.1 -12.0 inorganic triphosphatase compare
EX31_RS04645 -2.1 -1.4 DUF2559 family protein compare
EX31_RS08720 -2.1 -12.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07905 -2.0 -14.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS03400 -2.0 -6.9 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS13815 -1.9 -1.7 ribonuclease T compare
EX31_RS07880 -1.9 -13.7 sulfate adenylyltransferase subunit CysD compare
EX31_RS07560 -1.9 -14.9 ATP-dependent chaperone ClpB compare
EX31_RS14620 -1.9 -2.5 SCP2 domain-containing protein compare
EX31_RS07875 -1.9 -12.6 sulfate adenylyltransferase subunit CysN compare
EX31_RS16655 -1.8 -2.0 hypothetical protein compare
EX31_RS18570 -1.8 -2.1 cold shock-like protein CspD compare
EX31_RS08745 -1.8 -2.4 50S ribosomal protein L9 compare
EX31_RS06065 -1.7 -6.6 phosphate ABC transporter permease PstC compare
EX31_RS03480 -1.7 -4.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS10115 -1.7 -9.0 formyltetrahydrofolate deformylase compare
EX31_RS20735 -1.6 -4.9 exodeoxyribonuclease V subunit beta compare
EX31_RS03775 -1.6 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS19480 -1.6 -7.5 acetate kinase compare
EX31_RS07785 -1.6 -1.7 carbon storage regulator CsrA compare
EX31_RS19655 -1.6 -4.7 beta-ketoacyl-ACP synthase I compare
EX31_RS09895 -1.6 -2.8 type I DNA topoisomerase compare
EX31_RS23490 -1.5 -3.0 cell envelope integrity protein TolA compare
EX31_RS25375 -1.5 -2.3 ilv operon leader peptide compare
EX31_RS11435 -1.5 -4.8 ATP phosphoribosyltransferase compare
EX31_RS04105 -1.5 -2.6 helix-turn-helix domain-containing protein compare
EX31_RS20450 -1.5 -6.0 IMP dehydrogenase compare
EX31_RS03035 -1.5 -7.3 LysE family transporter compare
EX31_RS12875 -1.4 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS10215 -1.4 -2.6 NAD(P)-dependent oxidoreductase compare
EX31_RS23450 -1.4 -4.2 ADP-forming succinate--CoA ligase subunit beta compare
EX31_RS06150 -1.4 -10.3 transcriptional regulator AsnC compare
EX31_RS13480 -1.4 -4.1 site-specific tyrosine recombinase XerD compare
EX31_RS17615 -1.4 -2.1 hypothetical protein compare
EX31_RS14990 -1.4 -7.8 acetolactate synthase 2 catalytic subunit compare
EX31_RS02740 -1.4 -1.6 oxidative damage protection protein compare
EX31_RS18445 -1.3 -2.5 DUF2732 domain-containing protein compare
EX31_RS19385 -1.3 -3.9 NADH-quinone oxidoreductase subunit L compare
EX31_RS01595 -1.3 -1.2 phage minor tail protein G compare
EX31_RS26000 -1.3 -2.3 GntR family transcriptional regulator compare
EX31_RS19600 -1.3 -6.0 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS11525 -1.3 -2.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS07380 -1.3 -2.1 redox-regulated ATPase YchF compare
EX31_RS18370 -1.3 -2.6 tail protein X compare
EX31_RS04925 -1.2 -2.6 Fe-S biogenesis protein NfuA compare
EX31_RS17290 -1.2 -4.0 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
EX31_RS15555 -1.2 -1.7 amino acid ABC transporter ATP-binding protein compare
EX31_RS03790 -1.2 -1.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS11815 -1.2 -7.0 glucose-6-phosphate isomerase compare
EX31_RS25365 -1.2 -1.5 50S ribosomal protein L31 compare
EX31_RS15015 -1.2 -4.0 HTH-type transcriptional activator IlvY compare
EX31_RS19440 -1.2 -7.7 transcriptional regulator LrhA compare
EX31_RS19205 -1.2 -2.4 50S ribosomal protein L25 compare
EX31_RS20925 -1.2 -2.0 hypothetical protein compare
EX31_RS19420 -1.2 -2.8 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS21805 -1.2 -1.8 anti-sigma-E factor RseA compare
EX31_RS11010 -1.1 -1.1 DgsA anti-repressor MtfA compare
EX31_RS19485 -1.1 -4.9 phosphate acetyltransferase compare
EX31_RS23125 -1.1 -2.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS00920 -1.1 -1.7 DUF1493 family protein compare
EX31_RS25410 -1.1 -0.9 transposase compare
EX31_RS22740 -1.1 -5.7 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS18470 -1.1 -3.4 pyruvate formate lyase 1-activating protein compare
EX31_RS26025 -1.1 -1.7 conjugal transfer protein TraK compare
EX31_RS16285 -1.1 -1.9 conjugal transfer protein compare
EX31_RS25690 -1.1 -1.9 tyrosine-type recombinase/integrase compare
EX31_RS00625 -1.1 -1.5 YgdI/YgdR family lipoprotein compare
EX31_RS08535 -1.1 -1.8 30S ribosome-binding factor RbfA compare
EX31_RS10590 -1.1 -1.7 cell division topological specificity factor MinE compare
EX31_RS23485 -1.1 -1.6 colicin uptake protein TolR compare
EX31_RS03085 -1.0 -4.6 hypothetical protein compare
EX31_RS03955 -1.0 -4.1 two-component system response regulator ArcA compare
EX31_RS10100 -1.0 -2.0 two-component system response regulator RssB compare
EX31_RS19375 -1.0 -3.4 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS02385 -1.0 -1.4 hypothetical protein compare
EX31_RS07440 -1.0 -1.9 urea carboxylase-associated family protein compare
EX31_RS23500 -1.0 -2.6 peptidoglycan-associated lipoprotein Pal compare
EX31_RS18305 -1.0 -2.7 tail fiber assembly protein compare
EX31_RS02525 -1.0 -4.5 ABC transporter permease compare
EX31_RS18785 -1.0 -3.2 DUF2384 domain-containing protein compare
EX31_RS25970 -0.9 -2.0 glutathione transferase GstA compare
EX31_RS09530 -0.9 -3.4 hypothetical protein compare
EX31_RS15000 -0.9 -5.8 branched-chain amino acid transaminase compare
EX31_RS25645 -0.9 -0.7 K(+)-transporting ATPase subunit F compare
EX31_RS06225 -0.9 -1.4 hypothetical protein compare
EX31_RS21190 -0.9 -2.6 ribonuclease HI compare
EX31_RS25340 -0.9 -3.0 hypothetical protein compare
EX31_RS15155 -0.9 -2.0 diaminopimelate epimerase compare
EX31_RS09080 -0.9 -1.5 LysR family transcriptional regulator compare
EX31_RS09815 -0.9 -2.5 2-keto-3-deoxygluconate transporter compare
EX31_RS23315 -0.9 -4.2 replication initiation negative regulator SeqA compare
EX31_RS06405 -0.9 -1.6 SDR family oxidoreductase compare
EX31_RS04725 -0.9 -2.6 shikimate kinase AroK compare
EX31_RS20210 -0.9 -4.0 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS04630 -0.9 -5.9 aspartate aminotransferase family protein compare
EX31_RS18535 -0.9 -3.4 thioredoxin-disulfide reductase compare
EX31_RS23755 -0.9 -2.0 molybdopterin synthase sulfur carrier subunit compare
EX31_RS04710 -0.9 -2.5 adenine-specific DNA-methyltransferase compare
EX31_RS03030 -0.8 -4.6 helix-turn-helix transcriptional regulator compare
EX31_RS06325 -0.8 -3.3 pyrimidine (deoxy)nucleoside triphosphate diphosphatase compare
EX31_RS18270 -0.8 -6.4 formate C-acetyltransferase compare
EX31_RS08650 -0.8 -3.0 transcriptional regulator ArgR compare
EX31_RS01445 -0.8 -2.2 J domain-containing protein compare
EX31_RS11675 -0.8 -1.7 Holliday junction branch migration protein RuvA compare
EX31_RS20215 -0.8 -4.8 sulfate/thiosulfate ABC transporter permease CysW compare
EX31_RS19280 -0.8 -3.8 transcriptional regulator RcsB compare
EX31_RS07200 -0.8 -3.5 FNR family transcription factor compare
EX31_RS06680 -0.8 -0.8 cellulose biosynthesis protein BcsF compare
EX31_RS16845 -0.8 -2.0 DNA-binding protein HU-alpha compare
EX31_RS08825 -0.8 -5.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source L-Serine across organisms