Experiment set1IT074 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS01175 -10.9 -5.2 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01500 -10.1 -3.3 CBS domain-containing protein compare
MMP_RS06700 -8.7 -15.9 hypothetical protein compare
MMP_RS05285 -8.4 -10.0 MMPL family transporter compare
MMP_RS06625 -8.0 -3.1 DNA primase compare
MMP_RS01985 -7.9 -6.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS01020 -7.1 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS08650 -7.0 -5.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06685 -6.9 -15.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS05250 -6.8 -2.6 NFYB/HAP3 family transcription factor subunit compare
MMP_RS04710 -6.7 -2.9 hypothetical protein compare
MMP_RS05280 -6.7 -11.4 COG1361 S-layer family protein compare
MMP_RS05290 -6.6 -10.2 TetR/AcrR family transcriptional regulator compare
MMP_RS02280 -6.5 -1.3 DUF211 domain-containing protein compare
MMP_RS06295 -6.5 -11.0 methanogenesis marker 14 protein compare
MMP_RS06105 -6.5 -9.9 hydrogenase maturation peptidase HycI compare
MMP_RS03315 -6.4 -2.1 ferrous iron transport protein A compare
MMP_RS03960 -6.4 -1.2 hypothetical protein compare
MMP_RS03700 -6.4 -14.3 sodium:proton antiporter compare
MMP_RS06230 -6.4 -3.2 helix-turn-helix domain-containing protein compare
MMP_RS03580 -6.3 -4.5 signal recognition particle-docking protein FtsY compare
MMP_RS07445 -6.2 -7.2 helix-turn-helix domain-containing protein compare
MMP_RS00305 -6.2 -2.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS06680 -6.2 -14.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08745 -6.2 -10.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01005 -5.8 -1.6 riboflavin synthase compare
MMP_RS01380 -5.8 -6.4 PHP domain-containing protein compare
MMP_RS02145 -5.8 -10.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS07350 -5.8 -2.8 preprotein translocase subunit Sec61beta compare
MMP_RS07845 -5.7 -2.7 LL-diaminopimelate aminotransferase compare
MMP_RS00130 -5.7 -1.6 nickel-responsive transcriptional regulator NikR compare
MMP_RS03475 -5.7 -1.1 hypothetical protein compare
MMP_RS03015 -5.6 -9.8 GTP 3' 8-cyclase MoaA compare
MMP_RS01225 -5.6 -6.8 DUF5379 domain-containing protein compare
MMP_RS07390 -5.5 -4.4 cell division protein FtsZ compare
MMP_RS02875 -5.4 -11.4 chorismate pyruvate-lyase family protein compare
MMP_RS08460 -5.4 -3.8 proteasome-activating nucleotidase compare
MMP_RS00515 -5.4 -1.5 DUF655 domain-containing protein compare
MMP_RS08720 -5.3 -2.7 4Fe-4S binding protein compare
MMP_RS07005 -5.3 -1.0 4Fe-4S binding protein compare
MMP_RS06400 -5.3 -2.8 4Fe-4S binding protein compare
MMP_RS01220 -5.3 -11.8 hypothetical protein compare
MMP_RS07635 -5.3 -8.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS04775 -5.1 -6.0 adenosylhomocysteinase compare
MMP_RS04780 -5.0 -5.1 ribonuclease P compare
MMP_RS07380 -5.0 -3.3 transcription elongation factor Spt5 compare
MMP_RS06350 -5.0 -8.6 HesA/MoeB/ThiF family protein compare
MMP_RS05515 -5.0 -6.2 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06110 -5.0 -5.4 ATP-dependent protease LonB compare
MMP_RS01925 -5.0 -13.6 DUF1616 domain-containing protein compare
MMP_RS06285 -4.8 -3.4 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01900 -4.8 -19.2 hypothetical protein compare
MMP_RS05345 -4.8 -9.1 hypothetical protein compare
MMP_RS06355 -4.7 -3.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05640 -4.7 -7.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08440 -4.7 -4.5 cell division protein SepF compare
MMP_RS08635 -4.7 -2.9 UbiA family prenyltransferase compare
MMP_RS03025 -4.6 -7.4 molybdenum cofactor guanylyltransferase compare
MMP_RS06270 -4.6 -6.6 TIGR00300 family protein compare
MMP_RS01800 -4.5 -5.4 TIGR00303 family protein compare
MMP_RS01960 -4.5 -1.2 hypothetical protein compare
MMP_RS02135 -4.5 -4.9 DUF5612 domain-containing protein compare
MMP_RS07075 -4.5 -6.3 phosphomannomutase/phosphoglucomutase compare
MMP_RS00685 -4.4 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01830 -4.4 -1.6 tRNA-Val compare
MMP_RS04890 -4.4 -1.2 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06670 -4.3 -9.2 glucose-6-phosphate isomerase compare
MMP_RS00110 -4.3 -3.7 hypothetical protein compare
MMP_RS02355 -4.3 -4.4 30S ribosomal protein S27ae compare
MMP_RS07710 -4.3 -10.5 cell division protein FtsZ compare
MMP_RS06630 -4.3 -1.6 UPF0058 family protein compare
MMP_RS02800 -4.2 -6.0 nucleotidyltransferase domain-containing protein compare
MMP_RS05550 -4.2 -1.1 cation:proton antiporter compare
MMP_RS04870 -4.2 -5.6 TIGR02253 family HAD-type hydrolase compare
MMP_RS07330 -4.1 -19.6 membrane protein compare
MMP_RS01905 -4.1 -16.8 glycosyltransferase compare
MMP_RS03445 -4.0 -1.7 methanogenesis marker 17 protein compare
MMP_RS06705 -3.9 -8.9 formate/nitrite transporter family protein compare
MMP_RS01955 -3.9 -5.9 hypothetical protein compare
MMP_RS08840 -3.9 -13.3 class I SAM-dependent methyltransferase compare
MMP_RS04685 -3.9 -4.3 DUF126 domain-containing protein compare
MMP_RS03205 -3.9 -2.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS06315 -3.9 -1.4 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS04720 -3.9 -4.2 DedA family protein compare
MMP_RS01385 -3.8 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08715 -3.8 -2.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08320 -3.7 -10.0 molybdopterin molybdotransferase MoeA compare
MMP_RS01325 -3.7 -3.2 dihydroneopterin aldolase family protein compare
MMP_RS01975 -3.7 -21.3 hypothetical protein compare
MMP_RS05920 -3.7 -1.0 50S ribosomal protein L37e compare
MMP_RS06345 -3.7 -14.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01755 -3.6 -2.0 DUF2097 domain-containing protein compare
MMP_RS07730 -3.6 -3.3 pyruvate synthase subunit beta compare
MMP_RS06730 -3.6 -2.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS01265 -3.6 -3.4 hypothetical protein compare
MMP_RS02240 -3.5 -3.3 methanogenesis marker 7 protein compare
MMP_RS02175 -3.5 -1.3 DUF1611 domain-containing protein compare
MMP_RS03400 -3.5 -3.0 archease compare
MMP_RS06940 -3.4 -2.9 polyprenyl diphosphate synthase compare
MMP_RS08195 -3.4 -11.1 hypothetical protein compare
MMP_RS06925 -3.4 -3.5 ribonuclease VapC4 compare
MMP_RS03640 -3.4 -5.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02195 -3.4 -6.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08790 -3.3 -2.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS01795 -3.3 -3.2 methanogenesis marker 6 protein compare
MMP_RS01890 -3.3 -8.5 nucleotide sugar dehydrogenase compare
MMP_RS08590 -3.3 -6.2 flagellin compare
MMP_RS08300 -3.2 -1.8 metal-sulfur cluster assembly factor compare
MMP_RS01610 -3.2 -4.8 hypothetical protein compare
MMP_RS01875 -3.2 -13.7 N-acetyltransferase compare
MMP_RS01880 -3.2 -11.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS02885 -3.1 -17.5 molybdopterin biosynthesis protein compare
MMP_RS07525 -3.1 -6.3 4Fe-4S binding protein compare
MMP_RS02165 -3.1 -10.6 tRNA-dihydrouridine synthase compare
MMP_RS03600 -3.1 -3.0 triose-phosphate isomerase compare
MMP_RS01700 -3.1 -1.4 dihydroxy-acid dehydratase compare
MMP_RS03435 -3.1 -2.6 ketol-acid reductoisomerase compare
MMP_RS06020 -3.0 -5.6 archaeoflavoprotein AfpA compare
MMP_RS08605 -3.0 -8.0 flagellar protein E compare
MMP_RS03110 -3.0 -6.8 glycosyltransferase family 2 protein compare
MMP_RS01885 -3.0 -11.4 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS08435 -3.0 -2.6 Era-like GTP-binding protein compare
MMP_RS05430 -3.0 -2.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS05555 -3.0 -2.3 DUF4040 domain-containing protein compare
MMP_RS06130 -3.0 -5.6 peptidylprolyl isomerase compare
MMP_RS00695 -2.9 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06895 -2.9 -2.5 selenocysteine-specific translation elongation factor compare
MMP_RS04875 -2.9 -5.4 energy-converting hydrogenase B subunit P compare
MMP_RS06035 -2.9 -9.7 glycosyltransferase family 2 protein compare
MMP_RS06720 -2.9 -7.3 response regulator transcription factor compare
MMP_RS00810 -2.8 -10.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS00335 -2.8 -5.6 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS07200 -2.8 -7.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05635 -2.8 -11.1 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS06715 -2.7 -18.2 cache domain-containing protein compare
MMP_RS03155 -2.6 -10.0 precorrin-6A reductase compare
MMP_RS02900 -2.6 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07755 -2.6 -2.0 DUF555 domain-containing protein compare
MMP_RS00300 -2.6 -1.2 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS00985 -2.6 -6.2 CDC48 family AAA ATPase compare
MMP_RS09020 -2.5 -2.1 hypothetical protein compare
MMP_RS07600 -2.5 -2.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01335 -2.5 -3.2 prefoldin subunit beta compare
MMP_RS06340 -2.5 -7.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00120 -2.5 -6.8 LysR family transcriptional regulator compare
MMP_RS07385 -2.5 -2.0 protein translocase SEC61 complex subunit gamma compare
MMP_RS01365 -2.4 -2.7 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS07420 -2.4 -3.2 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01910 -2.4 -13.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06600 -2.4 -1.4 class III signal peptide-containing protein compare
MMP_RS01895 -2.4 -13.7 flippase compare
MMP_RS06980 -2.4 -7.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS04585 -2.4 -9.7 AIR synthase related protein compare
MMP_RS01915 -2.4 -14.7 DUF354 domain-containing protein compare
MMP_RS08595 -2.4 -1.7 flagellar protein C compare
MMP_RS08210 -2.3 -4.1 phosphatidylglycerophosphatase A compare
MMP_RS06120 -2.3 -3.3 UPF0147 family protein compare
MMP_RS07820 -2.3 -6.8 UPF0104 family protein compare
MMP_RS01725 -2.3 -6.0 class I SAM-dependent methyltransferase family protein compare
MMP_RS06475 -2.3 -4.6 FAD-dependent oxidoreductase compare
MMP_RS00915 -2.3 -8.8 DUF116 domain-containing protein compare
MMP_RS03035 -2.3 -3.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS03305 -2.3 -7.7 winged helix-turn-helix domain-containing protein compare
MMP_RS04695 -2.2 -8.5 selenide water dikinase SelD compare
MMP_RS01665 -2.2 -4.0 DUF2111 domain-containing protein compare
MMP_RS08165 -2.2 -1.8 phosphoglycerate dehydrogenase compare
MMP_RS05425 -2.2 -6.4 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07545 -2.2 -1.5 HTH domain-containing protein compare
MMP_RS05525 -2.2 -5.7 calcium/sodium antiporter compare
MMP_RS05845 -2.2 -2.5 tRNA-intron lyase compare
MMP_RS05540 -2.2 -2.7 hypothetical protein compare
MMP_RS08445 -2.1 -5.3 DUF2099 family protein compare
MMP_RS04090 -2.1 -4.7 hypothetical protein compare
MMP_RS01970 -2.1 -12.4 TIGR04279 domain-containing protein compare
MMP_RS08600 -2.1 -3.3 flagellar protein D compare
MMP_RS05925 -2.1 -4.5 small nuclear ribonucleoprotein compare
MMP_RS07875 -2.0 -7.2 hypothetical protein compare
MMP_RS06310 -2.0 -3.7 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS08915 -2.0 -3.2 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS08155 -1.9 -8.4 hypothetical protein compare
MMP_RS04500 -1.9 -12.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05445 -1.9 -6.8 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS05580 -1.9 -13.0 glycosyltransferase compare
MMP_RS07705 -1.8 -8.9 transcriptional regulator compare
MMP_RS08645 -1.8 -7.2 UPF0179 family protein compare
MMP_RS08820 -1.8 -6.8 hypothetical protein compare
MMP_RS06370 -1.8 -5.0 biotin synthase BioB compare
MMP_RS01180 -1.8 -1.3 XTP/dITP diphosphatase compare
MMP_RS01720 -1.8 -1.3 replication factor C large subunit compare
MMP_RS05815 -1.8 -1.9 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06885 -1.8 -3.2 50S ribosome-binding GTPase compare
MMP_RS02870 -1.8 -4.5 hypothetical protein compare
MMP_RS01920 -1.7 -11.5 glycosyltransferase family 2 protein compare
MMP_RS02100 -1.7 -5.7 metallophosphoesterase compare
MMP_RS01445 -1.7 -8.6 hypothetical protein compare
MMP_RS07415 -1.7 -5.0 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS08330 -1.7 -4.6 NADH-quinone oxidoreductase subunit H compare
MMP_RS02010 -1.7 -6.6 PHP domain-containing protein compare
MMP_RS06175 -1.7 -6.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS03095 -1.6 -6.1 diphthine synthase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanolamine across organisms