Experiment set1IT074 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 10 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS06325 +1.0 4.4 hypothetical protein compare
MMP_RS07345 +0.9 4.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS01570 +0.9 2.3 hypothetical protein compare
MMP_RS00655 +0.8 3.0 hypothetical protein compare
MMP_RS06975 +0.8 2.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06395 +0.7 2.0 ThiF family adenylyltransferase compare
MMP_RS08310 +0.7 2.1 TMEM165/GDT1 family protein compare
MMP_RS08845 +0.7 5.5 archaellum operon transcriptional activator EarA family protein compare
MMP_RS06710 +0.7 3.5 selenium-binding protein compare
MMP_RS00735 +0.7 3.2 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS07695 +0.7 3.8 DUF3236 domain-containing protein compare
MMP_RS07765 +0.7 3.4 sodium:alanine symporter family protein compare
MMP_RS02475 +0.7 1.7 hypothetical protein compare
MMP_RS08275 +0.6 4.1 hypothetical protein compare
MMP_RS08850 +0.6 5.3 hypothetical protein compare
MMP_RS08700 +0.6 4.4 hypothetical protein compare
MMP_RS06335 +0.6 2.9 HAD family hydrolase compare
MMP_RS06910 +0.6 4.1 RlmF-related methyltransferase compare
MMP_RS00395 +0.6 1.3 MGMT family protein compare
MMP_RS07125 +0.6 2.3 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07650 +0.5 3.6 TldD/PmbA family protein compare
MMP_RS00730 +0.5 1.7 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS07915 +0.5 2.0 DUF4870 domain-containing protein compare
MMP_RS08480 +0.5 3.4 molybdate ABC transporter substrate-binding protein compare
MMP_RS08500 +0.5 1.7 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS05675 +0.5 1.9 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS02680 +0.5 3.1 ABC transporter permease compare
MMP_RS01055 +0.5 1.3 hypothetical protein compare
MMP_RS05975 +0.5 1.2 hypothetical protein compare
MMP_RS02045 +0.5 1.2 tRNA-Met compare
MMP_RS00545 +0.5 2.1 XRE family transcriptional regulator compare
MMP_RS00430 +0.5 0.9 hypothetical protein compare
MMP_RS00725 +0.5 2.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS00345 +0.5 2.4 DUF2666 domain-containing protein compare
MMP_RS06930 +0.5 3.1 MBL fold metallo-hydrolase compare
MMP_RS08080 +0.5 3.1 YchF/TatD family DNA exonuclease compare
MMP_RS07890 +0.4 1.1 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS04610 +0.4 2.2 Dabb family protein compare
MMP_RS02790 +0.4 0.7 class III signal peptide-containing protein compare
MMP_RS03450 +0.4 1.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS09025 +0.4 0.7 hypothetical protein compare
MMP_RS00295 +0.4 1.4 gamma carbonic anhydrase family protein compare
MMP_RS05715 +0.4 3.0 hypothetical protein compare
MMP_RS05835 +0.4 0.5 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS03965 +0.4 1.3 hypothetical protein compare
MMP_RS08160 +0.4 2.2 EamA family transporter compare
MMP_RS03220 +0.4 1.2 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS00085 +0.4 2.4 DNA cytosine methyltransferase compare
MMP_RS07700 +0.4 2.7 DUF1188 domain-containing protein compare
MMP_RS01630 +0.4 2.1 N-glycosylase/DNA lyase compare
MMP_RS07895 +0.4 1.4 cytochrome c compare
MMP_RS06520 +0.4 1.1 DUF1786 domain-containing protein compare
MMP_RS08315 +0.4 1.8 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS05720 +0.4 1.6 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS01980 +0.4 3.3 trimeric intracellular cation channel family protein compare
MMP_RS01675 +0.4 0.9 hypothetical protein compare
MMP_RS00825 +0.4 1.2 fumarylacetoacetate hydrolase family protein compare
MMP_RS06545 +0.4 1.1 ferredoxin family protein compare
MMP_RS08430 +0.4 1.4 HAD family hydrolase compare
MMP_RS00290 +0.4 2.1 hypothetical protein compare
MMP_RS05970 +0.4 2.0 class II SORL domain-containing protein compare
MMP_RS07155 +0.4 1.9 MFS transporter compare
MMP_RS07550 +0.4 2.5 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS07925 +0.4 1.4 haloacid dehalogenase compare
MMP_RS00240 +0.4 2.8 type II secretion system F family protein compare
MMP_RS06440 +0.4 2.2 CBS domain-containing protein compare
MMP_RS08630 +0.4 1.8 archaellar assembly protein FlaJ compare
MMP_RS08130 +0.4 2.5 IGHMBP2 family helicase compare
MMP_RS06590 +0.4 1.2 GNAT family N-acetyltransferase compare
MMP_RS05985 +0.4 0.7 hypothetical protein compare
MMP_RS06540 +0.4 1.2 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS05365 +0.4 0.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS03300 +0.3 0.4 TOBE domain-containing protein compare
MMP_RS07590 +0.3 2.5 hypothetical protein compare
MMP_RS08555 +0.3 1.4 hypothetical protein compare
MMP_RS00660 +0.3 2.7 alkaline phosphatase family protein compare
MMP_RS08670 +0.3 1.9 metallophosphoesterase compare
MMP_RS06140 +0.3 1.4 radical SAM protein compare
MMP_RS01635 +0.3 1.9 thiamine pyrophosphate-dependent enzyme compare
MMP_RS07775 +0.3 1.7 alanine dehydrogenase compare
MMP_RS02740 +0.3 1.5 hypothetical protein compare
MMP_RS07985 +0.3 2.4 nitroreductase family protein compare
MMP_RS00285 +0.3 2.3 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS07815 +0.3 0.6 DUF2120 domain-containing protein compare
MMP_RS07120 +0.3 2.1 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS05090 +0.3 1.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS06070 +0.3 2.3 iron ABC transporter substrate-binding protein compare
MMP_RS08325 +0.3 2.0 hypothetical protein compare
MMP_RS06190 +0.3 2.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS05530 +0.3 2.1 signal peptide peptidase SppA compare
MMP_RS08260 +0.3 2.2 DUF99 family protein compare
MMP_RS01965 +0.3 1.8 DUF1616 domain-containing protein compare
MMP_RS08285 +0.3 1.9 serine/threonine protein kinase compare
MMP_RS06530 +0.3 1.4 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS07095 +0.3 1.2 PspC domain-containing protein compare
MMP_RS08980 +0.3 1.4 hypothetical protein compare
MMP_RS00375 +0.3 1.8 ammonium transporter compare
MMP_RS00245 +0.3 2.5 type II secretion system F family protein compare
MMP_RS09050 +0.3 0.7 CAP domain-containing protein compare
MMP_RS02500 +0.3 1.4 minichromosome maintenance protein MCM compare
MMP_RS05785 +0.3 2.4 ATP-binding protein compare
MMP_RS02705 +0.3 1.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08470 +0.3 1.3 ATP-binding cassette domain-containing protein compare
MMP_RS03420 +0.3 0.8 acetolactate synthase small subunit compare
MMP_RS07100 +0.3 1.8 hypothetical protein compare
MMP_RS08380 +0.3 1.0 phosphatase PAP2 family protein compare
MMP_RS08640 +0.3 1.8 TIM barrel protein compare
MMP_RS06060 +0.3 2.2 hypothetical protein compare
MMP_RS01320 +0.3 1.3 hypothetical protein compare
MMP_RS05990 +0.3 1.2 DsrE family protein compare
MMP_RS09060 +0.3 2.1 hypothetical protein compare
MMP_RS05490 +0.3 1.2 IMPACT family protein compare
MMP_RS01525 +0.3 0.8 nucleoside-diphosphate kinase compare
MMP_RS01620 +0.3 1.6 hypothetical protein compare
MMP_RS08835 +0.3 1.8 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS08930 +0.3 0.4 hypothetical protein compare
MMP_RS08685 +0.3 2.0 hypothetical protein compare
MMP_RS01165 +0.3 1.5 DUF434 domain-containing protein compare
MMP_RS09065 +0.3 1.9 hypothetical protein compare
MMP_RS01290 +0.3 1.8 class III signal peptide-containing protein compare
MMP_RS05900 +0.3 1.4 tetratricopeptide repeat protein compare
MMP_RS03150 +0.3 2.2 phosphoglycerate mutase compare
MMP_RS02360 +0.3 1.7 hypothetical protein compare
MMP_RS03895 +0.3 0.9 hypothetical protein compare
MMP_RS00280 +0.3 1.7 DUF2118 domain-containing protein compare
MMP_RS04205 +0.3 1.1 carboxymuconolactone decarboxylase family protein compare
MMP_RS01785 +0.3 1.3 hypothetical protein compare
MMP_RS07675 +0.3 2.2 S-layer protein compare
MMP_RS07715 +0.3 1.6 YfcE family phosphodiesterase compare
MMP_RS02300 +0.3 1.0 NAD(P)H-dependent oxidoreductase compare
MMP_RS06045 +0.3 1.5 DNA polymerase compare
MMP_RS03625 +0.3 1.3 cell wall-binding protein compare
MMP_RS05505 +0.3 1.5 class IV adenylate cyclase compare
MMP_RS02605 +0.3 0.3 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS02725 +0.2 1.8 molybdate ABC transporter permease subunit compare
MMP_RS08665 +0.2 2.1 hypothetical protein compare
MMP_RS00540 +0.2 1.3 PLP-dependent aminotransferase family protein compare
MMP_RS06015 +0.2 1.4 flavodoxin family protein compare
MMP_RS02490 +0.2 1.0 hypothetical protein compare
MMP_RS06860 +0.2 0.5 4Fe-4S binding protein compare
MMP_RS01115 +0.2 1.5 molybdopterin molybdotransferase MoeA compare
MMP_RS07835 +0.2 0.6 TldD/PmbA family protein compare
MMP_RS00535 +0.2 0.4 TIGR00375 family protein compare
MMP_RS07130 +0.2 1.4 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS01420 +0.2 0.4 hypothetical protein compare
MMP_RS08830 +0.2 1.4 GTP-binding protein compare
MMP_RS06115 +0.2 1.8 class II aldolase/adducin family protein compare
MMP_RS05175 +0.2 1.2 hypothetical protein compare
MMP_RS08625 +0.2 1.7 type II/IV secretion system ATPase subunit compare
MMP_RS06150 +0.2 1.6 hypothetical protein compare
MMP_RS05275 +0.2 1.5 AI-2E family transporter compare
MMP_RS08205 +0.2 1.7 stage II sporulation protein M compare
MMP_RS06090 +0.2 1.4 iron ABC transporter permease compare
MMP_RS09030 +0.2 1.0 hypothetical protein compare
MMP_RS08490 +0.2 1.8 hypothetical protein compare
MMP_RS02310 +0.2 0.5 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS08760 +0.2 0.6 hypothetical protein compare
MMP_RS02685 +0.2 1.1 molybdate ABC transporter substrate-binding protein compare
MMP_RS08855 +0.2 1.0 hypothetical protein compare
MMP_RS08390 +0.2 1.2 DUF5400 domain-containing protein compare
MMP_RS06655 +0.2 1.3 glycoside hydrolase family 15 protein compare
MMP_RS08770 +0.2 1.4 hypothetical protein compare
MMP_RS07185 +0.2 1.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS03785 +0.2 0.9 cupin domain-containing protein compare
MMP_RS05085 +0.2 1.1 AAA family ATPase compare
MMP_RS02425 +0.2 1.1 hypothetical protein compare
MMP_RS06905 +0.2 0.8 hypothetical protein compare
MMP_RS04985 +0.2 0.8 DUF2180 family protein compare
MMP_RS07145 +0.2 0.9 AmmeMemoRadiSam system protein B compare
MMP_RS00665 +0.2 1.0 hypothetical protein compare
MMP_RS00035 +0.2 1.5 DUF2098 family protein compare
MMP_RS06970 +0.2 1.1 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS02410 +0.2 0.6 ABC transporter substrate-binding protein compare
MMP_RS02825 +0.2 1.4 mechanosensitive ion channel family protein compare
MMP_RS04265 +0.2 0.8 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07900 +0.2 0.4 YeeE/YedE family protein compare
MMP_RS02810 +0.2 1.2 hypothetical protein compare
MMP_RS07140 +0.2 1.6 TIGR00341 family protein compare
MMP_RS06560 +0.2 1.1 hypothetical protein compare
MMP_RS04410 +0.2 0.8 hypothetical protein compare
MMP_RS00390 +0.2 1.3 ammonium transporter compare
MMP_RS00435 +0.2 1.5 CPBP family intramembrane metalloprotease compare
MMP_RS06875 +0.2 0.9 FAD-dependent oxidoreductase compare
MMP_RS04165 +0.2 1.0 TetR/AcrR family transcriptional regulator compare
MMP_RS07805 +0.2 1.1 ABC transporter permease compare
MMP_RS08410 +0.2 1.1 DUF169 domain-containing protein compare
MMP_RS00855 +0.2 1.0 DUF367 family protein compare
MMP_RS07840 +0.2 0.7 ribonuclease III compare
MMP_RS01490 +0.2 1.3 tetratricopeptide repeat protein compare
MMP_RS04060 +0.2 1.0 hypothetical protein compare
MMP_RS05480 +0.2 1.6 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS08250 +0.2 1.0 pyruvate kinase compare
MMP_RS05270 +0.2 1.6 PEGA domain-containing protein compare
MMP_RS00100 +0.2 1.5 tRNA pseudouridine(13) synthase TruD compare
MMP_RS00800 +0.2 1.1 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08395 +0.2 1.0 DsrE family protein compare
MMP_RS05075 +0.2 1.5 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS02585 +0.2 1.5 methyl-accepting chemotaxis protein compare
MMP_RS05235 +0.2 1.1 exodeoxyribonuclease III compare
MMP_RS06050 +0.2 1.0 ZIP family metal transporter compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanolamine across organisms