Experiment set1IT074 for Pantoea sp. MT58

Compare to:

Defined media control, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_08085 -5.0 -7.4 helix-turn-helix domain-containing protein compare
IAI47_10520 -4.9 -3.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_17225 -4.9 -25.0 sulfite reductase subunit alpha compare
IAI47_09580 -4.6 -4.5 FNR family transcription factor compare
IAI47_00780 -4.6 -5.5 6-phosphofructokinase compare
IAI47_15635 -4.6 -5.2 RNA polymerase-binding protein DksA compare
IAI47_16205 -4.5 -12.1 threonine synthase compare
IAI47_01040 -4.5 -14.1 threonine ammonia-lyase, biosynthetic compare
IAI47_17220 -4.5 -31.1 glutamate synthase large subunit compare
IAI47_17965 -4.4 -17.1 glucose-6-phosphate isomerase compare
IAI47_12215 -4.4 -18.2 dihydroorotase compare
IAI47_09185 -4.4 -7.3 glutamine amidotransferase compare
IAI47_13690 -4.3 -1.5 cell envelope integrity protein TolA compare
IAI47_14945 -4.2 -4.1 pyrroline-5-carboxylate reductase compare
IAI47_09190 -4.2 -16.1 anthranilate synthase component 1 compare
IAI47_13900 -4.0 -21.1 asparagine synthase B compare
IAI47_07065 -4.0 -13.0 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_00905 -3.9 -13.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_07085 -3.9 -16.8 histidinol-phosphate transaminase compare
IAI47_07075 -3.8 -12.8 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_01050 -3.8 -19.2 ketol-acid reductoisomerase compare
IAI47_16120 -3.8 -13.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_05275 -3.8 -7.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_09180 -3.7 -14.0 anthranilate phosphoribosyltransferase compare
IAI47_17185 -3.7 -6.7 RNA polymerase factor sigma-54 compare
IAI47_01030 -3.7 -15.5 branched-chain amino acid transaminase compare
IAI47_04895 -3.7 -5.8 pyridoxine 5'-phosphate synthase compare
IAI47_16015 -3.7 -7.8 3-isopropylmalate dehydratase small subunit compare
IAI47_16350 -3.7 -12.5 phosphoserine phosphatase compare
IAI47_07090 -3.6 -11.4 histidinol dehydrogenase compare
IAI47_16115 -3.6 -20.4 carbamoyl-phosphate synthase large subunit compare
IAI47_13770 -3.6 -15.3 citrate synthase compare
IAI47_16215 -3.6 -19.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_15115 -3.6 -14.3 glutamate-5-semialdehyde dehydrogenase compare
IAI47_00895 -3.6 -19.8 phosphoenolpyruvate carboxylase compare
IAI47_07080 -3.6 -11.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_18040 -3.5 -18.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_09165 -3.5 -12.5 tryptophan synthase subunit alpha compare
IAI47_01035 -3.4 -17.9 dihydroxy-acid dehydratase compare
IAI47_03860 -3.4 -14.1 diaminopimelate decarboxylase compare
IAI47_06235 -3.4 -9.5 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_00910 -3.4 -11.5 acetylglutamate kinase compare
IAI47_13480 -3.4 -2.6 molybdopterin synthase sulfur carrier subunit compare
IAI47_18830 -3.3 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_16210 -3.3 -12.4 homoserine kinase compare
IAI47_16080 -3.3 -10.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_03975 -3.3 -15.3 amino-acid N-acetyltransferase compare
IAI47_18015 -3.3 -15.4 homoserine O-succinyltransferase compare
IAI47_00915 -3.3 -13.6 argininosuccinate synthase compare
IAI47_17215 -3.3 -1.6 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_00890 -3.3 -13.2 methylenetetrahydrofolate reductase compare
IAI47_00880 -3.3 -15.3 cystathionine gamma-synthase compare
IAI47_00920 -3.3 -14.8 argininosuccinate lyase compare
IAI47_16830 -3.2 -16.0 ornithine carbamoyltransferase compare
IAI47_09170 -3.2 -14.9 tryptophan synthase subunit beta compare
IAI47_12705 -3.2 -13.3 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_05180 -3.2 -13.3 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_09175 -3.1 -12.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_16005 -3.1 -11.2 3-isopropylmalate dehydrogenase compare
IAI47_04120 -3.1 -16.7 GTP diphosphokinase compare
IAI47_06275 -3.1 -16.9 amidophosphoribosyltransferase compare
IAI47_14350 -3.0 -10.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_07060 -3.0 -9.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_04930 -3.0 -17.3 phosphoribosylformylglycinamidine synthase compare
IAI47_14355 -3.0 -10.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_07070 -2.9 -7.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_09275 -2.9 -8.3 orotidine-5'-phosphate decarboxylase compare
IAI47_15120 -2.9 -9.8 glutamate 5-kinase compare
IAI47_12865 -2.9 -13.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_03725 -2.8 -8.5 phosphoglycerate dehydrogenase compare
IAI47_09240 -2.8 -3.3 HTH-type transcriptional regulator CysB compare
IAI47_16000 -2.7 -15.7 2-isopropylmalate synthase compare
IAI47_07550 -2.7 -1.8 tRNA-Asn compare
IAI47_12915 -2.7 -10.0 leucine-responsive transcriptional regulator Lrp compare
IAI47_07095 -2.7 -8.4 ATP phosphoribosyltransferase compare
IAI47_16010 -2.6 -12.7 3-isopropylmalate dehydratase large subunit compare
IAI47_17120 -2.5 -5.2 BolA family iron metabolism protein IbaG compare
IAI47_18045 -2.5 -8.1 phosphoribosylamine--glycine ligase compare
IAI47_04410 -2.5 -11.9 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_16860 -2.4 -12.0 aspartate carbamoyltransferase compare
IAI47_06325 -2.4 -7.8 acetate kinase compare
IAI47_06320 -2.4 -8.5 phosphate acetyltransferase compare
IAI47_06980 -2.4 -4.3 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_10925 -2.3 -4.9 EAL domain-containing protein compare
IAI47_05425 -2.3 -5.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_13685 -2.2 -5.1 Tol-Pal system protein TolB compare
IAI47_05070 -2.2 -1.1 outer membrane protein assembly factor BamB compare
IAI47_05440 -2.1 -9.5 cysteine synthase A compare
IAI47_16870 -2.1 -6.9 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_00600 -2.1 -9.4 orotate phosphoribosyltransferase compare
IAI47_12880 -2.1 -14.8 formate C-acetyltransferase compare
IAI47_09055 -2.1 -11.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_12885 -2.1 -7.8 pyruvate formate lyase 1-activating protein compare
IAI47_00460 -2.1 -2.0 glutamate--ammonia ligase compare
IAI47_16085 -2.0 -1.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_02695 -1.9 -9.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_16390 -1.9 -0.9 tRNA-Leu compare
IAI47_00410 -1.8 -10.5 molybdenum cofactor guanylyltransferase MobA compare
IAI47_19690 -1.8 -2.1 hypothetical protein compare
IAI47_07165 -1.7 -1.8 exodeoxyribonuclease I compare
IAI47_00445 -1.7 -8.4 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_01955 -1.7 -9.1 aspartate aminotransferase family protein compare
IAI47_04270 -1.7 -7.4 respiratory nitrate reductase subunit gamma compare
IAI47_13495 -1.6 -6.1 GTP 3',8-cyclase MoaA compare
IAI47_06395 -1.6 -1.7 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_12110 -1.6 -3.6 ribonuclease E compare
IAI47_11450 -1.6 -5.8 ankyrin repeat domain-containing protein compare
IAI47_17035 -1.6 -2.5 ribosome maturation factor RimP compare
IAI47_04255 -1.6 -12.8 nitrate reductase subunit alpha compare
IAI47_04265 -1.6 -7.5 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_00455 -1.6 -7.3 nitrogen regulation protein NR(II) compare
IAI47_04160 -1.6 -9.6 phosphoadenylyl-sulfate reductase compare
IAI47_07040 -1.6 -3.1 acyltransferase compare
IAI47_19945 -1.6 -1.2 hypothetical protein compare
IAI47_13740 -1.6 -1.7 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_00465 -1.5 -2.6 ribosome-dependent GTPase TypA compare
IAI47_00300 -1.5 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_03820 -1.5 -3.8 site-specific tyrosine recombinase XerD compare
IAI47_16190 -1.5 -4.0 molybdopterin adenylyltransferase compare
IAI47_08845 -1.4 -2.0 cell division topological specificity factor MinE compare
IAI47_13475 -1.4 -2.9 molybdopterin synthase catalytic subunit MoaE compare
IAI47_13140 -1.4 -7.3 molybdopterin molybdotransferase MoeA compare
IAI47_15485 -1.4 -1.3 molecular chaperone Skp compare
IAI47_15540 -1.4 -6.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_06245 -1.4 -3.3 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_12030 -1.3 -8.4 PTS glucose transporter subunit IIBC compare
IAI47_15605 -1.3 -1.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_13145 -1.3 -5.9 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_05155 -1.3 -9.7 polyphosphate kinase 1 compare
IAI47_04260 -1.3 -9.4 nitrate reductase subunit beta compare
IAI47_03855 -1.3 -5.9 LysR family transcriptional regulator compare
IAI47_09010 -1.3 -4.8 formyltetrahydrofolate deformylase compare
IAI47_19550 -1.2 -1.6 DUF1471 domain-containing protein compare
IAI47_04835 -1.2 -5.4 ATP-dependent RNA helicase SrmB compare
IAI47_01365 -1.2 -1.2 inorganic phosphate transporter PitA compare
IAI47_20850 -1.2 -3.4 TetR/AcrR family transcriptional regulator compare
IAI47_06405 -1.1 -2.2 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_04245 -1.1 -5.9 two-component system response regulator NarL compare
IAI47_21665 -1.1 -1.2 DUF333 domain-containing protein compare
IAI47_12875 -1.1 -5.6 formate transporter FocA compare
IAI47_17005 -1.1 -4.9 polyribonucleotide nucleotidyltransferase compare
IAI47_13180 -1.1 -4.1 manganese-binding transcriptional regulator MntR compare
IAI47_10725 -1.1 -1.5 DUF1656 domain-containing protein compare
IAI47_08045 -1.1 -2.0 NUDIX domain-containing protein compare
IAI47_18530 -1.1 -1.6 thioredoxin TrxA compare
IAI47_04250 -1.1 -7.1 NarK family nitrate/nitrite MFS transporter compare
IAI47_18410 -1.1 -3.2 diaminopimelate epimerase compare
IAI47_00900 -1.0 -6.8 acetylornithine deacetylase compare
IAI47_13485 -1.0 -3.7 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_08855 -1.0 -3.9 septum site-determining protein MinC compare
IAI47_13545 -1.0 -5.4 6-phosphogluconolactonase compare
IAI47_16220 -1.0 -2.6 thr operon leader peptide compare
IAI47_12085 -1.0 -3.3 phosphate acyltransferase PlsX compare
IAI47_20250 -1.0 -1.2 DeoR family transcriptional regulator compare
IAI47_10840 -1.0 -2.8 pyruvate kinase PykF compare
IAI47_06380 -1.0 -1.8 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_20600 -1.0 -1.8 hypothetical protein compare
IAI47_01940 -1.0 -2.1 DUF2559 family protein compare
IAI47_10320 -0.9 -0.6 Rrf2 family transcriptional regulator compare
IAI47_11360 -0.9 -1.7 hypothetical protein compare
IAI47_11310 -0.9 -2.1 redox-regulated ATPase YchF compare
IAI47_15110 -0.9 -3.3 chromophore lyase compare
IAI47_05810 -0.9 -1.2 hypothetical protein compare
IAI47_19675 -0.9 -2.2 ParD-like family protein compare
IAI47_20705 -0.9 -1.1 sulfur carrier protein ThiS compare
IAI47_05520 -0.9 -1.1 tRNA-Ala compare
IAI47_18055 -0.8 -3.1 DNA-binding protein HU-alpha compare
IAI47_09395 -0.8 -1.4 phage shock protein PspA compare
IAI47_06240 -0.8 -4.0 aspartate-semialdehyde dehydrogenase compare
IAI47_10825 -0.8 -0.7 tRNA-Val compare
IAI47_03135 -0.8 -3.4 outer membrane channel protein TolC compare
IAI47_21635 -0.8 -3.5 hypothetical protein compare
IAI47_13695 -0.8 -0.6 colicin uptake protein TolR compare
IAI47_00450 -0.8 -5.5 nitrogen regulation protein NR(I) compare
IAI47_07350 -0.8 -0.7 hypothetical protein compare
IAI47_09040 -0.8 -1.0 NAD-dependent epimerase compare
IAI47_02090 -0.8 -2.3 elongation factor Tu compare
IAI47_18435 -0.8 -6.2 uroporphyrinogen-III C-methyltransferase compare
IAI47_18145 -0.8 -1.1 elongation factor Tu compare
IAI47_17385 -0.8 -2.3 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_07905 -0.8 -0.8 Arc family DNA-binding protein compare
IAI47_18820 -0.8 -2.8 helix-turn-helix domain-containing protein compare
IAI47_04155 -0.8 -5.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_13490 -0.8 -3.4 molybdenum cofactor biosynthesis protein B compare
IAI47_18315 -0.8 -3.8 HTH-type transcriptional regulator MetR compare
IAI47_20625 -0.7 -1.4 DUF2946 domain-containing protein compare
IAI47_17645 -0.7 -3.2 hypothetical protein compare
IAI47_21790 -0.7 -1.5 helix-turn-helix domain-containing protein compare
IAI47_06355 -0.7 -4.3 transcriptional regulator LrhA compare
IAI47_10890 -0.7 -5.6 FAD-binding oxidoreductase compare
IAI47_10455 -0.7 -1.8 electron transport complex subunit RsxC compare
IAI47_09265 -0.7 -1.9 LapA family protein compare
IAI47_16095 -0.7 -2.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_17205 -0.7 -1.3 PTS phosphocarrier protein NPr compare
IAI47_03685 -0.7 -3.8 erythrose-4-phosphate dehydrogenase compare
IAI47_07890 -0.7 -2.9 DgsA anti-repressor MtfA compare
IAI47_13950 -0.7 -0.8 PhoH family protein compare
IAI47_07180 -0.7 -4.2 DUF496 family protein compare
IAI47_12645 -0.7 -2.3 porin OmpA compare
IAI47_08445 -0.7 -0.7 Holliday junction branch migration protein RuvA compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in no stress control experiments

For no stress control Sodium nitrate across organisms