Experiment set1IT073 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -4.7 -3.3 3-isopropylmalate dehydratase compare
AO353_10670 -4.5 -6.9 shikimate dehydrogenase compare
AO353_02070 -4.5 -6.1 prephenate dehydratase compare
AO353_12085 -4.3 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12090 -4.3 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_13070 -4.3 -8.3 phosphoserine phosphatase compare
AO353_20620 -4.3 -8.1 isopropylmalate isomerase compare
AO353_05115 -4.2 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12070 -4.1 -8.9 imidazoleglycerol-phosphate dehydratase compare
AO353_14505 -4.1 -12.1 ketol-acid reductoisomerase compare
AO353_09240 -4.1 -2.8 acetylglutamate kinase compare
AO353_07230 -4.0 -16.7 anthranilate synthase compare
AO353_07220 -3.9 -8.7 anthranilate synthase compare
AO353_00310 -3.9 -10.0 transaldolase compare
AO353_12520 -3.9 -12.4 glutamate synthase compare
AO353_20695 -3.9 -7.8 O-succinylhomoserine sulfhydrylase compare
AO353_20635 -3.9 -14.2 3-isopropylmalate dehydrogenase compare
AO353_12115 -3.9 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_10030 -3.8 -10.7 pyruvate carboxylase subunit A compare
AO353_08185 -3.8 -11.5 methionine biosynthesis protein MetW compare
AO353_02075 -3.8 -11.2 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20665 -3.8 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_14400 -3.8 -4.5 Fis family transcriptional regulator compare
AO353_12515 -3.8 -22.3 glutamate synthase compare
AO353_12075 -3.7 -9.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08180 -3.6 -14.3 homoserine O-acetyltransferase compare
AO353_08345 -3.6 -10.1 dihydroxy-acid dehydratase compare
AO353_10710 -3.6 -6.0 tryptophan synthase subunit beta compare
AO353_07155 -3.5 -8.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14495 -3.5 -12.7 acetolactate synthase 3 catalytic subunit compare
AO353_12365 -3.5 -5.3 phosphoribosyl-AMP cyclohydrolase compare
AO353_06495 -3.5 -5.8 gamma-glutamyl phosphate reductase compare
AO353_07210 -3.5 -6.6 indole-3-glycerol-phosphate synthase compare
AO353_12500 -3.5 -2.4 shikimate kinase compare
AO353_08475 -3.5 -10.4 phosphoserine phosphatase compare
AO353_10025 -3.4 -16.0 pyruvate carboxylase subunit B compare
AO353_08510 -3.4 -6.1 3-phosphoglycerate dehydrogenase compare
AO353_05110 -3.4 -12.5 histidinol dehydrogenase compare
AO353_07215 -3.4 -8.7 anthranilate phosphoribosyltransferase compare
AO353_04155 -3.3 -13.3 ornithine carbamoyltransferase compare
AO353_03245 -3.3 -10.8 permease DsdX compare
AO353_12360 -3.2 -10.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_22800 -3.2 -4.9 sulfite reductase compare
AO353_20540 -3.2 -9.0 aromatic amino acid aminotransferase compare
AO353_16940 -3.2 -7.4 deoxycytidine triphosphate deaminase compare
AO353_14500 -3.2 -8.3 acetolactate synthase 3 regulatory subunit compare
AO353_08015 -3.2 -7.8 5,10-methylenetetrahydrofolate reductase compare
AO353_10035 -3.2 -10.0 LysR family transcriptional regulator compare
AO353_04105 -3.1 -10.1 argininosuccinate synthase compare
AO353_08685 -3.1 -10.4 N-acetylglutamate synthase compare
AO353_07525 -3.1 -15.6 biotin synthase compare
AO353_13165 -3.0 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
AO353_14370 -3.0 -8.0 glucose-6-phosphate isomerase compare
AO353_09000 -3.0 -7.1 argininosuccinate lyase compare
AO353_14115 -2.9 -7.3 gamma-glutamyl kinase compare
AO353_19060 -2.9 -5.6 CysB family transcriptional regulator compare
AO353_00825 -2.9 -3.9 porin compare
AO353_02685 -2.9 -4.7 phosphoribosylglycinamide formyltransferase compare
AO353_14595 -2.8 -10.3 carbonate dehydratase compare
AO353_03360 -2.7 -9.1 glucose-6-phosphate dehydrogenase compare
AO353_26885 -2.6 -9.2 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) conserved
AO353_21625 -2.5 -3.4 Fe/S biogenesis protein NfuA compare
AO353_15925 -2.5 -10.3 2-isopropylmalate synthase compare
AO353_10705 -2.5 -5.7 tryptophan synthase subunit alpha compare
AO353_03020 -2.5 -9.5 arginine N-succinyltransferase compare
AO353_09890 -2.4 -6.5 phosphate ABC transporter ATP-binding protein compare
AO353_08780 -2.3 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_07520 -2.3 -12.3 8-amino-7-oxononanoate synthase compare
AO353_08045 -2.3 -14.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_03250 -2.2 -3.3 gluconokinase compare
AO353_09285 -2.2 -10.5 reactive intermediate/imine deaminase compare
AO353_07505 -2.1 -9.3 dethiobiotin synthetase compare
AO353_07515 -2.0 -2.7 transporter compare
AO353_10730 -2.0 -2.1 hypothetical protein compare
AO353_08165 -1.9 -3.6 pyrroline-5-carboxylate reductase compare
AO353_13100 -1.9 -2.2 GTPase RsgA compare
AO353_06040 -1.9 -4.4 exodeoxyribonuclease V subunit alpha compare
AO353_04355 -1.8 -2.8 homoserine dehydrogenase compare
AO353_04220 -1.8 -6.1 chemotaxis protein CheY compare
AO353_07510 -1.8 -9.2 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_12420 -1.8 -4.2 predicted FeS cluster maintenance protein (from data) compare
AO353_03775 -1.8 -8.3 pyruvate kinase compare
AO353_12145 -1.8 -5.0 nitrogen regulation protein NR(I) compare
AO353_04175 -1.8 -5.1 glycerol uptake facilitator GlpF compare
AO353_08880 -1.8 -3.1 exopolyphosphatase compare
AO353_13140 -1.8 -6.3 tRNA dimethylallyltransferase compare
AO353_05075 -1.7 -9.4 adenylylsulfate kinase compare
AO353_07075 -1.7 -5.5 elongation factor Tu compare
AO353_04565 -1.7 -6.1 nucleoid-associated protein compare
AO353_03580 -1.7 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_08885 -1.7 -12.2 polyphosphate kinase compare
AO353_03425 -1.7 -8.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_00490 -1.7 -2.3 PasA protein compare
AO353_03585 -1.6 -3.4 ATP-dependent DNA helicase RuvA compare
AO353_13640 -1.6 -4.1 histidine kinase compare
AO353_07355 -1.6 -6.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03420 -1.6 -4.5 phosphogluconate dehydratase compare
AO353_06050 -1.6 -6.6 exodeoxyribonuclease V subunit gamma compare
AO353_02465 -1.6 -2.4 hypothetical protein compare
AO353_02250 -1.6 -2.8 chorismate synthase compare
AO353_11165 -1.6 -8.4 hypothetical protein compare
AO353_14420 -1.6 -4.1 molecular chaperone DnaK compare
AO353_15185 -1.5 -5.1 ATPase compare
AO353_05690 -1.5 -3.7 SsrA-binding protein compare
AO353_10455 -1.5 -2.3 tRNA modification GTPase MnmE compare
AO353_02720 -1.5 -5.5 cysteine synthase compare
AO353_02710 -1.5 -9.4 (p)ppGpp synthetase compare
AO353_20175 -1.4 -3.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_06320 -1.3 -3.9 AsnC family transcriptional regulator compare
AO353_05625 -1.3 -1.8 transcription elongation factor GreA compare
AO353_05105 -1.3 -7.3 histidinol-phosphate aminotransferase compare
AO353_14405 -1.3 -8.0 ATPase compare
AO353_03795 -1.3 -3.8 fumarate hydratase compare
AO353_05080 -1.3 -7.8 sulfate adenylyltransferase compare
AO353_13225 -1.3 -3.3 50S ribosomal protein L9 compare
AO353_06045 -1.3 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_01410 -1.3 -2.9 ribonuclease E compare
AO353_27650 -1.3 -3.9 cell division protein FtsK compare
AO353_08485 -1.3 -8.8 threonine dehydratase compare
AO353_28425 -1.2 -3.4 TetR family transcriptional regulator compare
AO353_20410 -1.2 -2.4 hypothetical protein compare
AO353_11770 -1.2 -2.1 molecular chaperone Hsp33 compare
AO353_16440 -1.2 -3.2 ArsC family transcriptional regulator compare
AO353_18505 -1.2 -2.1 translation initiation factor 2 compare
AO353_07325 -1.2 -1.9 diadenosine tetraphosphatase compare
AO353_04055 -1.2 -1.9 methionine--tRNA ligase compare
AO353_18960 -1.2 -2.3 terminase compare
AO353_05415 -1.2 -1.9 hypothetical protein compare
AO353_11850 -1.2 -3.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_20095 -1.2 -4.3 histidine kinase compare
AO353_12510 -1.2 -7.3 cell division protein compare
AO353_03015 -1.1 -3.7 arginine N-succinyltransferase compare
AO353_03615 -1.1 -3.0 cold-shock protein compare
AO353_07460 -1.1 -2.5 DNA-binding protein compare
AO353_08265 -1.1 -4.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_10040 -1.1 -5.8 transcriptional regulator compare
AO353_27550 -1.1 -2.1 hypothetical protein compare
AO353_12345 -1.1 -2.0 twin-arginine protein translocation system subunit TatC compare
AO353_02060 -1.1 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_20170 -1.1 -3.7 trigger factor compare
AO353_12150 -1.1 -4.1 histidine kinase compare
AO353_15725 -1.1 -3.1 hypothetical protein compare
AO353_20510 -1.1 -1.8 amidase compare
AO353_11530 -1.1 -5.8 diguanylate cyclase compare
AO353_01375 -1.1 -4.8 phosphate acyltransferase compare
AO353_02975 -1.1 -2.6 aspartate kinase compare
AO353_17750 -1.1 -2.7 transcriptional regulator compare
AO353_09560 -1.0 -1.1 type VI secretion protein compare
AO353_14775 -1.0 -4.1 hypothetical protein compare
AO353_00185 -1.0 -2.1 phage tail protein compare
AO353_02595 -1.0 -2.0 cobalamin synthase compare
AO353_02040 -1.0 -2.2 integration host factor subunit beta compare
AO353_10780 -1.0 -1.6 DNA-binding protein compare
AO353_07850 -1.0 -3.3 ATP-dependent RNA helicase compare
AO353_00355 -1.0 -2.0 transcriptional regulator compare
AO353_03430 -1.0 -2.7 methylglyoxal synthase compare
AO353_19360 -1.0 -2.3 peroxiredoxin compare
AO353_09905 -1.0 -5.2 phosphate-binding protein compare
AO353_14935 -1.0 -2.9 aminopeptidase compare
AO353_03590 -1.0 -2.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_02270 -0.9 -3.5 isochorismatase compare
AO353_14990 -0.9 -1.8 hypothetical protein compare
AO353_20660 -0.9 -2.6 pseudouridine synthase compare
AO353_12080 -0.9 -3.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_16810 -0.9 -2.9 recombinase RecX compare
AO353_27090 -0.9 -1.8 hypothetical protein compare
AO353_06720 -0.9 -1.0 NrdR family transcriptional regulator compare
AO353_09860 -0.9 -6.0 histidine kinase compare
AO353_09265 -0.9 -2.0 hypothetical protein compare
AO353_20630 -0.9 -4.8 SAM-dependent methyltransferase compare
AO353_03715 -0.9 -1.9 H-NS histone compare
AO353_12105 -0.8 -3.5 peptidase S41 compare
AO353_10985 -0.8 -1.7 hypothetical protein compare
AO353_18540 -0.8 -2.2 pseudouridine synthase compare
AO353_02810 -0.8 -4.4 histidine kinase compare
AO353_16450 -0.8 -5.3 protein-PII uridylyltransferase compare
AO353_13245 -0.8 -4.1 hypothetical protein compare
AO353_04035 -0.8 -2.8 exclusion suppressor FxsA compare
AO353_14740 -0.8 -2.6 GTP-binding protein compare
AO353_03025 -0.8 -2.7 acetylornithine aminotransferase compare
AO353_16805 -0.8 -3.5 recombinase RecA compare
AO353_26550 -0.8 -1.5 hypothetical protein compare
AO353_00860 -0.8 -2.4 EstX protein compare
AO353_04810 -0.8 -1.3 hypothetical protein compare
AO353_03825 -0.8 -2.6 hypothetical protein compare
AO353_16375 -0.8 -1.4 hypothetical protein compare
AO353_00495 -0.8 -1.6 DNA topoisomerase I compare
AO353_09900 -0.8 -4.5 phosphate ABC transporter permease compare
AO353_15170 -0.8 -1.8 cytochrome D ubiquinol oxidase subunit III compare
AO353_02640 -0.8 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_20185 -0.8 -3.6 DNA-binding protein compare
AO353_10435 -0.8 -4.6 chromosome partitioning protein compare
AO353_03760 -0.7 -2.6 pilus assembly protein PilZ compare
AO353_12395 -0.7 -2.2 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_08100 -0.7 -2.0 chemotaxis protein CheY compare
AO353_28295 -0.7 -1.9 GNAT family acetyltransferase compare
AO353_11485 -0.7 -2.5 hypothetical protein compare
AO353_00750 -0.7 -2.3 GntR family transcriptional regulator compare
AO353_08645 -0.7 -1.2 transporter compare
AO353_21615 -0.7 -4.8 methionine synthase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Gluconic Acid sodium salt across organisms