Experiment set1IT073 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_02735 +1.2 11.3 chemotaxis protein CheY compare
AO353_21830 +1.1 10.0 chemotaxis protein CheY compare
AO353_25585 +1.1 2.8 argininosuccinate lyase compare
AO353_19020 +0.9 1.6 hypothetical protein compare
AO353_26865 +0.9 2.7 transcriptional regulator compare
AO353_11340 +0.8 2.1 MarR family transcriptional regulator compare
AO353_19605 +0.8 2.4 hypothetical protein compare
AO353_20925 +0.8 2.1 hypothetical protein compare
AO353_27710 +0.8 2.1 DNA repair protein compare
AO353_06540 +0.8 1.3 hypothetical protein compare
AO353_08875 +0.8 2.4 amino acid ABC transporter ATP-binding protein compare
AO353_03100 +0.8 2.0 XRE family transcriptional regulator compare
AO353_16055 +0.8 3.2 hypothetical protein compare
AO353_05240 +0.8 2.7 rod shape-determining protein MreD compare
AO353_22855 +0.8 2.4 hypothetical protein compare
AO353_22360 +0.7 2.3 ABC transporter ATP-binding protein compare
AO353_00115 +0.7 1.5 hypothetical protein compare
AO353_25925 +0.7 1.6 hypothetical protein compare
AO353_26115 +0.7 1.4 hypothetical protein compare
AO353_19340 +0.7 6.3 amino acid ABC transporter substrate-binding protein compare
AO353_07875 +0.7 2.7 hypothetical protein compare
AO353_22305 +0.7 2.1 LysR family transcriptional regulator compare
AO353_04090 +0.7 2.0 leucyl-tRNA synthetase compare
AO353_24595 +0.7 1.8 hypothetical protein compare
AO353_11190 +0.7 5.5 ABC transporter compare
AO353_11195 +0.7 5.7 hemolysin secretion protein D compare
AO353_02570 +0.6 2.6 hypothetical protein compare
AO353_00125 +0.6 1.7 hypothetical protein compare
AO353_23910 +0.6 2.1 response regulator compare
AO353_09875 +0.6 0.9 hypothetical protein compare
AO353_17940 +0.6 2.2 hypothetical protein compare
AO353_26935 +0.6 2.0 LysR family transcriptional regulator compare
AO353_11155 +0.6 5.2 thioesterase compare
AO353_12575 +0.6 2.5 type II secretion system protein GspJ compare
AO353_20495 +0.6 1.5 NUDIX hydrolase compare
AO353_19335 +0.6 4.2 TetR family transcriptional regulator compare
AO353_14485 +0.6 0.4 pseudouridine synthase compare
AO353_06745 +0.6 1.6 zinc-binding protein compare
AO353_19015 +0.6 4.7 hypothetical protein compare
AO353_00635 +0.6 1.6 hypothetical protein compare
AO353_12020 +0.5 2.1 hypothetical protein compare
AO353_18120 +0.5 1.8 hypothetical protein compare
AO353_11050 +0.5 2.4 hypothetical protein compare
AO353_11185 +0.5 4.6 channel protein TolC compare
AO353_01055 +0.5 4.5 AraC family transcriptional regulator compare
AO353_01770 +0.5 2.7 pirin compare
AO353_20115 +0.5 2.0 LysR family transcriptional regulator compare
AO353_21110 +0.5 1.4 hypothetical protein compare
AO353_01060 +0.5 3.3 3-ketoacyl-ACP reductase compare
AO353_09475 +0.5 2.3 hypothetical protein compare
AO353_17885 +0.5 1.1 hypothetical protein compare
AO353_01685 +0.5 1.0 hypothetical protein compare
AO353_22950 +0.5 1.6 universal stress protein UspA compare
AO353_07140 +0.5 4.4 peptidase M23 compare
AO353_11180 +0.5 4.7 large adhesive protein compare
AO353_08060 +0.5 1.4 hypothetical protein compare
AO353_09460 +0.5 2.0 hypothetical protein compare
AO353_10990 +0.5 2.9 glutamate:protein symporter compare
AO353_07770 +0.5 2.4 AraC family transcriptional regulator compare
AO353_10785 +0.5 3.1 protein tyrosine phosphatase compare
AO353_25450 +0.5 1.4 cyanate hydratase compare
AO353_17100 +0.5 1.7 hypothetical protein compare
AO353_25160 +0.5 1.7 ABC transporter substrate-binding protein compare
AO353_27430 +0.5 1.8 hypothetical protein compare
AO353_21290 +0.5 1.3 hypothetical protein compare
AO353_16070 +0.5 2.0 PadR family transcriptional regulator compare
AO353_22150 +0.5 1.1 iron transporter compare
AO353_12790 +0.5 1.2 hypothetical protein compare
AO353_11160 +0.5 3.0 GntR family transcriptional regulator compare
AO353_15395 +0.5 1.5 transcriptional regulator compare
AO353_23220 +0.5 1.4 hypothetical protein compare
AO353_11610 +0.5 1.9 glutamine ABC transporter ATP-binding protein compare
AO353_03290 +0.5 1.1 peptide deformylase compare
AO353_03035 +0.5 1.9 AraC family transcriptional regulator compare
AO353_01190 +0.5 1.1 hypothetical protein compare
AO353_24735 +0.4 2.2 hypothetical protein compare
AO353_12895 +0.4 2.2 lipopolysaccharide kinase compare
AO353_08640 +0.4 1.3 hypothetical protein compare
AO353_23410 +0.4 1.1 hypothetical protein compare
AO353_17365 +0.4 1.6 hypothetical protein compare
AO353_22600 +0.4 1.3 hypothetical protein compare
AO353_20590 +0.4 1.2 hydrolase compare
AO353_13660 +0.4 2.4 tRNA-dihydrouridine synthase B compare
AO353_25475 +0.4 1.9 multidrug resistance protein compare
AO353_08615 +0.4 2.4 hypothetical protein compare
AO353_23405 +0.4 1.2 hypothetical protein compare
AO353_09200 +0.4 2.2 transcriptional regulator compare
AO353_04185 +0.4 2.6 DeoR family transcriptional regulator compare
AO353_18475 +0.4 2.3 AraC family transcriptional regulator compare
AO353_09945 +0.4 2.1 LysR family transcriptional regulator compare
AO353_00065 +0.4 1.7 oxidoreductase compare
AO353_19025 +0.4 3.4 acetyltransferase compare
AO353_21175 +0.4 1.3 hypothetical protein compare
AO353_01065 +0.4 2.8 acetyl-CoA acetyltransferase compare
AO353_24605 +0.4 1.4 hypothetical protein compare
AO353_29305 +0.4 2.1 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) compare
AO353_12935 +0.4 1.6 glycosyltransferase compare
AO353_17945 +0.4 1.1 cyclic nucleotide-binding protein compare
AO353_12540 +0.4 1.4 hypothetical protein compare
AO353_26995 +0.4 2.1 hypothetical protein compare
AO353_25000 +0.4 1.9 magnesium transporter compare
AO353_06455 +0.4 1.2 D-alanyl-D-alanine carboxypeptidase compare
AO353_01795 +0.4 1.1 hypothetical protein compare
AO353_09330 +0.4 1.6 helicase compare
AO353_27365 +0.4 1.3 hypothetical protein compare
AO353_22720 +0.4 2.2 curli production assembly protein CsgG compare
AO353_16615 +0.4 3.3 RNA polymerase sigma factor RpoS compare
AO353_09705 +0.4 1.3 hypothetical protein compare
AO353_08775 +0.4 1.2 cell division protein ZapA compare
AO353_06425 +0.4 1.3 lipoyl synthase compare
AO353_12330 +0.4 2.1 peptide ABC transporter ATP-binding protein compare
AO353_23520 +0.4 1.9 muconolactone delta-isomerase compare
AO353_22520 +0.4 1.1 hypothetical protein compare
AO353_28515 +0.4 2.2 malate:quinone oxidoreductase compare
AO353_08545 +0.4 2.0 thiol-disulfide isomerase compare
AO353_17785 +0.4 1.2 hypothetical protein compare
AO353_08130 +0.4 1.2 uracil phosphoribosyltransferase compare
AO353_19680 +0.4 2.5 mechanosensitive ion channel protein MscS compare
AO353_23655 +0.4 2.1 hypothetical protein compare
AO353_16955 +0.4 1.9 succinylglutamate desuccinylase compare
AO353_27925 +0.4 1.3 hypothetical protein compare
AO353_16155 +0.4 1.3 antibiotic biosynthesis monooxygenase compare
AO353_24885 +0.4 1.8 Crp/Fnr family transcriptional regulator compare
AO353_12565 +0.4 1.3 type II secretion system protein GspH compare
AO353_19490 +0.4 1.7 Fis family transcriptional regulator compare
AO353_12570 +0.4 1.6 type II secretion system protein GspI compare
AO353_26125 +0.4 1.5 hypothetical protein compare
AO353_03410 +0.4 1.2 chemotaxis protein CheY compare
AO353_18360 +0.4 2.0 hypothetical protein compare
AO353_17935 +0.4 0.9 hypothetical protein compare
AO353_25490 +0.4 1.5 transcriptional regulator compare
AO353_24685 +0.4 0.8 hypothetical protein compare
AO353_12690 +0.4 0.6 acyl carrier protein compare
AO353_16355 +0.4 1.7 TetR family transcriptional regulator compare
AO353_11170 +0.4 2.8 hypothetical protein compare
AO353_00890 +0.4 1.9 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_09600 +0.4 1.8 hypothetical protein compare
AO353_26450 +0.4 1.6 hypothetical protein compare
AO353_01070 +0.4 3.3 poly(R)-hydroxyalkanoic acid synthase compare
AO353_24880 +0.4 2.0 Crp/Fnr family transcriptional regulator compare
AO353_26390 +0.4 1.1 glyoxalase compare
AO353_21580 +0.4 1.9 type VI secretion protein compare
AO353_09340 +0.4 1.4 hypothetical protein compare
AO353_18335 +0.4 0.9 hypothetical protein compare
AO353_00810 +0.4 1.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_28450 +0.4 1.3 LysR family transcriptional regulator compare
AO353_28310 +0.4 1.1 deaminase compare
AO353_16860 +0.4 1.3 hypothetical protein compare
AO353_29000 +0.4 1.1 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_24135 +0.4 1.5 hypothetical protein compare
AO353_05510 +0.4 2.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_13950 +0.4 1.7 50S rRNA methyltransferase compare
AO353_04420 +0.4 1.2 Fe-S protein compare
AO353_05005 +0.3 1.6 hypothetical protein compare
AO353_22585 +0.3 2.3 HxlR family transcriptional regulator compare
AO353_07400 +0.3 2.2 hypothetical protein compare
AO353_24740 +0.3 1.2 hypothetical protein compare
AO353_16530 +0.3 0.7 ribonuclease HII compare
AO353_18435 +0.3 1.7 MarR family transcriptional regulator compare
AO353_11280 +0.3 1.5 phage tail protein compare
AO353_06350 +0.3 2.5 hydrogenase compare
AO353_23485 +0.3 2.4 lytic transglycosylase compare
AO353_26795 +0.3 1.3 NAD-dependent deacetylase compare
AO353_00970 +0.3 1.8 group II intron reverse transcriptase/maturase compare
AO353_19685 +0.3 1.3 alkylhydroperoxidase compare
AO353_28300 +0.3 1.4 cupin compare
AO353_17985 +0.3 1.7 LysR family transcriptional regulator compare
AO353_25760 +0.3 2.3 UDP pyrophosphate phosphatase compare
AO353_08035 +0.3 1.5 hypothetical protein compare
AO353_22845 +0.3 1.7 GNAT family acetyltransferase compare
AO353_27510 +0.3 2.1 hypothetical protein compare
AO353_13790 +0.3 1.9 hypothetical protein compare
AO353_03065 +0.3 2.1 hypothetical protein compare
AO353_20860 +0.3 1.0 hypothetical protein compare
AO353_24275 +0.3 0.5 transcriptional regulator compare
AO353_11060 +0.3 1.5 holliday junction resolvasome, helicase subunit compare
AO353_28055 +0.3 1.0 hypothetical protein compare
AO353_23725 +0.3 1.6 hypothetical protein compare
AO353_16655 +0.3 1.0 phage baseplate protein compare
AO353_18660 +0.3 2.1 AAA family ATPase compare
AO353_02860 +0.3 1.7 flagellar biosynthesis protein FlgB compare
AO353_16775 +0.3 2.2 baseplate J protein compare
AO353_13050 +0.3 1.4 DNA topoisomerase IV compare
AO353_22315 +0.3 2.1 MFS transporter compare
AO353_06290 +0.3 1.4 hypothetical protein compare
AO353_02220 +0.3 0.7 hypothetical protein compare
AO353_08960 +0.3 1.6 peptidylprolyl isomerase compare
AO353_04440 +0.3 1.4 hypothetical protein compare
AO353_27985 +0.3 1.0 peptidase M14 compare
AO353_23165 +0.3 1.0 cupin compare
AO353_00260 +0.3 0.9 hypothetical protein compare
AO353_01875 +0.3 2.0 glycine/betaine ABC transporter substrate-binding protein compare
AO353_26985 +0.3 1.4 hypothetical protein compare
AO353_18500 +0.3 0.8 chemotaxis protein CheY compare
AO353_12950 +0.3 2.1 polymerase compare
AO353_19840 +0.3 1.0 hypothetical protein compare
AO353_00590 +0.3 1.4 cytochrome C oxidase Cbb3 compare
AO353_06345 +0.3 2.9 histidine kinase compare
AO353_13800 +0.3 1.2 hypothetical protein compare
AO353_15465 +0.3 1.7 cytochrome C oxidase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Gluconic Acid sodium salt across organisms