Experiment set1IT073 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Chloramphenicol 0.005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS21745 +1.4 8.0 hypothetical protein compare
CA265_RS05035 +1.3 5.9 TetR family transcriptional regulator compare
CA265_RS21330 +1.3 8.1 TetR family transcriptional regulator compare
CA265_RS16035 +1.2 7.7 oxidoreductase compare
CA265_RS24200 +1.2 2.8 fatty acid hydroxylase compare
CA265_RS12765 +1.1 7.3 SRPBCC family protein compare
CA265_RS10980 +1.0 6.7 histidine kinase compare
CA265_RS14640 +1.0 2.0 UDP-glucose 4-epimerase compare
CA265_RS24205 +1.0 3.4 hypothetical protein compare
CA265_RS24195 +0.8 2.4 TetR family transcriptional regulator compare
CA265_RS00940 +0.8 3.5 hypothetical protein compare
CA265_RS04700 +0.8 4.2 hypothetical protein compare
CA265_RS24385 +0.8 1.8 GNAT family N-acetyltransferase compare
CA265_RS18550 +0.8 1.1 N-acetyltransferase compare
CA265_RS14825 +0.8 1.8 outer membrane protein assembly factor BamD compare
CA265_RS25030 +0.8 2.5 hypothetical protein compare
CA265_RS23020 +0.7 5.1 hypothetical protein compare
CA265_RS17025 +0.7 2.1 hypothetical protein compare
CA265_RS21855 +0.7 4.7 RNA methyltransferase compare
CA265_RS01560 +0.7 1.6 circadian clock protein KaiB compare
CA265_RS10000 +0.7 1.1 nitrite reductase small subunit compare
CA265_RS18275 +0.7 2.3 pyrophosphatase compare
CA265_RS19040 +0.7 3.2 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
CA265_RS20320 +0.6 5.8 hypothetical protein compare
CA265_RS22010 +0.6 1.5 hypothetical protein compare
CA265_RS24355 +0.6 1.6 transcriptional regulator compare
CA265_RS15870 +0.6 2.0 hypothetical protein compare
CA265_RS12780 +0.6 1.5 hypothetical protein compare
CA265_RS18525 +0.6 2.6 four helix bundle protein compare
CA265_RS03015 +0.6 1.4 tRNA-specific adenosine deaminase compare
CA265_RS08965 +0.5 3.7 thioesterase compare
CA265_RS23120 +0.5 2.0 hypothetical protein compare
CA265_RS04995 +0.5 2.2 hypothetical protein compare
CA265_RS00025 +0.5 1.2 hypothetical protein compare
CA265_RS21065 +0.5 1.3 hypothetical protein compare
CA265_RS12855 +0.5 1.7 hypothetical protein compare
CA265_RS10615 +0.5 2.6 diacylglycerol kinase compare
CA265_RS21555 +0.5 1.8 hypothetical protein compare
CA265_RS18945 +0.5 3.3 LacI family transcriptional regulator compare
CA265_RS03235 +0.5 2.6 hypothetical protein compare
CA265_RS04560 +0.5 1.1 hypothetical protein compare
CA265_RS10995 +0.5 2.1 hypothetical protein compare
CA265_RS03740 +0.5 1.7 hypothetical protein compare
CA265_RS23035 +0.5 1.5 four-helix bundle copper-binding protein compare
CA265_RS08160 +0.5 3.5 hypothetical protein compare
CA265_RS25040 +0.5 2.4 excinuclease ABC subunit C compare
CA265_RS16785 +0.5 1.1 50S ribosomal protein L17 compare
CA265_RS19740 +0.5 1.9 gliding motility lipoprotein GldD compare
CA265_RS10600 +0.5 2.7 RNA polymerase subunit sigma-24 compare
CA265_RS18845 +0.5 2.3 GNAT family N-acetyltransferase compare
CA265_RS24370 +0.5 2.1 hypothetical protein compare
CA265_RS20315 +0.5 3.9 hypothetical protein compare
CA265_RS19170 +0.5 2.9 chromosome segregation protein ScpA compare
CA265_RS08890 +0.5 2.3 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA265_RS05210 +0.5 2.6 tRNA methyltransferase compare
CA265_RS12270 +0.5 1.7 RNA polymerase subunit sigma compare
CA265_RS17555 +0.5 3.5 hypothetical protein compare
CA265_RS18775 +0.5 1.7 hypothetical protein compare
CA265_RS04695 +0.5 2.6 hypothetical protein compare
CA265_RS18495 +0.5 0.7 hypothetical protein compare
CA265_RS05615 +0.5 2.5 hypothetical protein compare
CA265_RS24675 +0.4 2.0 RNA polymerase compare
CA265_RS25435 +0.4 2.0 hypothetical protein compare
CA265_RS16470 +0.4 2.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS22720 +0.4 1.6 hypothetical protein compare
CA265_RS17560 +0.4 3.1 peptidylprolyl isomerase compare
CA265_RS19140 +0.4 1.2 tRNA-Ile compare
CA265_RS17330 +0.4 1.5 hypothetical protein compare
CA265_RS15050 +0.4 3.4 lysine transporter LysE compare
CA265_RS25160 +0.4 2.5 glycosyl transferase family 2 compare
CA265_RS16995 +0.4 1.7 hypothetical protein compare
CA265_RS19810 +0.4 0.9 hypothetical protein compare
CA265_RS22650 +0.4 2.5 branched chain amino acid aminotransferase compare
CA265_RS21760 +0.4 1.7 hypothetical protein compare
CA265_RS23145 +0.4 1.5 hypothetical protein compare
CA265_RS03385 +0.4 1.4 hypothetical protein compare
CA265_RS19940 +0.4 3.4 hypothetical protein compare
CA265_RS13740 +0.4 3.2 cysteine synthase compare
CA265_RS24005 +0.4 1.9 OsmC family peroxiredoxin compare
CA265_RS02105 +0.4 2.3 hypothetical protein compare
CA265_RS19540 +0.4 3.2 tail-specific protease compare
CA265_RS08225 +0.4 1.7 hydrolase compare
CA265_RS05135 +0.4 1.9 ferritin compare
CA265_RS21315 +0.4 1.5 hypothetical protein compare
CA265_RS11905 +0.4 1.6 hypothetical protein compare
CA265_RS07610 +0.4 1.7 KTSC domain-containing protein compare
CA265_RS23665 +0.4 1.9 hypothetical protein compare
CA265_RS02675 +0.4 1.8 hypothetical protein compare
CA265_RS22310 +0.4 1.6 superoxide dismutase compare
CA265_RS25150 +0.4 2.3 hypothetical protein compare
CA265_RS19910 +0.4 2.0 GDSL family lipase compare
CA265_RS16615 +0.4 1.2 hypothetical protein compare
CA265_RS15810 +0.4 2.0 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
CA265_RS04690 +0.4 2.2 AraC family transcriptional regulator compare
CA265_RS04340 +0.4 1.7 hypothetical protein compare
CA265_RS19465 +0.4 1.3 protein tyrosine phosphatase compare
CA265_RS09355 +0.4 2.2 endonuclease V compare
CA265_RS19685 +0.4 2.1 hypothetical protein compare
CA265_RS19380 +0.4 2.3 beta-carotene 15,15'-monooxygenase compare
CA265_RS24605 +0.4 0.4 hypothetical protein compare
CA265_RS23230 +0.4 1.8 hypothetical protein compare
CA265_RS09650 +0.4 1.1 diaminopimelate decarboxylase compare
CA265_RS16295 +0.4 2.8 LacI family transcriptional regulator compare
CA265_RS21850 +0.4 2.6 hypothetical protein compare
CA265_RS17940 +0.4 2.1 hypothetical protein compare
CA265_RS03715 +0.4 0.7 hypothetical protein compare
CA265_RS08090 +0.4 1.3 serine/threonine protein kinase compare
CA265_RS21000 +0.4 1.7 ribosome silencing factor compare
CA265_RS00490 +0.4 1.9 hypothetical protein compare
CA265_RS24790 +0.4 2.5 peptidylprolyl isomerase compare
CA265_RS02670 +0.4 2.0 thymidine kinase compare
CA265_RS04865 +0.4 1.4 DUF4440 domain-containing protein compare
CA265_RS06415 +0.4 1.9 hypothetical protein compare
CA265_RS00265 +0.4 1.7 RNA polymerase sigma-70 factor compare
CA265_RS21255 +0.4 2.6 hypothetical protein compare
CA265_RS03415 +0.4 1.5 hypothetical protein compare
CA265_RS19025 +0.4 1.3 peptidase M23 compare
CA265_RS03160 +0.4 1.8 hydrolase compare
CA265_RS05065 +0.4 2.4 hypothetical protein compare
CA265_RS25360 +0.4 2.2 phosphoribosyltransferase compare
CA265_RS25335 +0.4 0.8 hypothetical protein compare
CA265_RS20095 +0.4 1.8 NADH oxidase compare
CA265_RS25125 +0.4 2.3 hypothetical protein compare
CA265_RS17935 +0.4 2.3 hypothetical protein compare
CA265_RS18030 +0.4 2.2 hypothetical protein compare
CA265_RS14390 +0.4 1.7 hypothetical protein compare
CA265_RS10915 +0.4 2.5 hypothetical protein compare
CA265_RS04295 +0.4 0.7 transcriptional regulator compare
CA265_RS17535 +0.3 2.5 deoxyribodipyrimidine photolyase compare
CA265_RS05515 +0.3 1.3 hypothetical protein compare
CA265_RS01200 +0.3 1.7 hypothetical protein compare
CA265_RS05585 +0.3 1.5 peroxiredoxin compare
CA265_RS05950 +0.3 1.9 CDP-alcohol phosphatidyltransferase compare
CA265_RS05395 +0.3 1.4 heme oxygenase compare
CA265_RS02750 +0.3 1.9 hypothetical protein compare
CA265_RS23265 +0.3 1.1 iron-binding protein compare
CA265_RS20380 +0.3 2.1 hemagglutinin compare
CA265_RS19545 +0.3 2.0 protease compare
CA265_RS16005 +0.3 1.6 hypothetical protein compare
CA265_RS23675 +0.3 1.2 hypothetical protein compare
CA265_RS07295 +0.3 2.3 hypothetical protein compare
CA265_RS10740 +0.3 2.2 DNA-binding response regulator compare
CA265_RS18865 +0.3 1.4 hypothetical protein compare
CA265_RS22180 +0.3 1.6 hypothetical protein compare
CA265_RS14785 +0.3 2.1 pyrroloquinoline quinone biosynthesis protein PqqB compare
CA265_RS19945 +0.3 1.9 hypothetical protein compare
CA265_RS17420 +0.3 2.1 glyoxalase compare
CA265_RS23905 +0.3 2.0 hypothetical protein compare
CA265_RS18420 +0.3 1.6 hypothetical protein compare
CA265_RS15350 +0.3 2.0 3-ketohexose reductase (NADH) (from data) compare
CA265_RS10885 +0.3 2.1 thiol reductase thioredoxin compare
CA265_RS19650 +0.3 1.3 DNA-3-methyladenine glycosylase compare
CA265_RS22920 +0.3 2.0 peptidase M23 compare
CA265_RS17115 +0.3 1.3 arsenate reductase compare
CA265_RS03105 +0.3 0.9 hypothetical protein compare
CA265_RS24580 +0.3 2.4 hypothetical protein compare
CA265_RS16600 +0.3 1.6 hypothetical protein compare
CA265_RS03490 +0.3 2.2 hypothetical protein compare
CA265_RS18805 +0.3 0.6 hypothetical protein compare
CA265_RS24450 +0.3 1.4 hypothetical protein compare
CA265_RS15920 +0.3 1.6 hypothetical protein compare
CA265_RS11095 +0.3 1.4 hypothetical protein compare
CA265_RS00325 +0.3 1.3 hypothetical protein compare
CA265_RS07880 +0.3 2.0 transcriptional regulator compare
CA265_RS14015 +0.3 1.3 transcriptional regulator compare
CA265_RS07100 +0.3 1.2 DUF4440 domain-containing protein compare
CA265_RS24215 +0.3 1.5 hypothetical protein compare
CA265_RS22260 +0.3 1.8 hypothetical protein compare
CA265_RS05090 +0.3 1.4 hypothetical protein compare
CA265_RS04740 +0.3 2.2 carboxymethylenebutenolidase compare
CA265_RS22240 +0.3 2.4 hypothetical protein compare
CA265_RS15825 +0.3 2.0 ketol-acid reductoisomerase compare
CA265_RS18950 +0.3 1.6 transcriptional regulator compare
CA265_RS16225 +0.3 0.3 hypothetical protein compare
CA265_RS19955 +0.3 0.7 hypothetical protein compare
CA265_RS20355 +0.3 0.8 hypothetical protein compare
CA265_RS00875 +0.3 1.9 alkaline phosphatase compare
CA265_RS12805 +0.3 1.6 hypothetical protein compare
CA265_RS08110 +0.3 1.0 hypothetical protein compare
CA265_RS06335 +0.3 1.5 hypothetical protein compare
CA265_RS24305 +0.3 1.4 hypothetical protein compare
CA265_RS00655 +0.3 1.5 RNA polymerase subunit sigma-24 compare
CA265_RS12340 +0.3 1.2 hypothetical protein compare
CA265_RS06180 +0.3 1.7 hypothetical protein compare
CA265_RS02415 +0.3 2.1 monofunctional biosynthetic peptidoglycan transglycosylase compare
CA265_RS11050 +0.3 1.3 hypothetical protein compare
CA265_RS09255 +0.3 1.9 ATP-binding protein compare
CA265_RS22655 +0.3 1.1 hypothetical protein compare
CA265_RS14410 +0.3 2.2 4-amino-4-deoxychorismate lyase compare
CA265_RS20120 +0.3 1.6 rhomboid family intramembrane serine protease compare
CA265_RS11940 +0.3 1.3 hypothetical protein compare
CA265_RS21865 +0.3 2.1 two-component sensor histidine kinase compare
CA265_RS08070 +0.3 0.6 tRNA-Ser compare
CA265_RS21030 +0.3 1.7 hypothetical protein compare
CA265_RS16030 +0.3 1.4 hypothetical protein compare
CA265_RS14650 +0.3 1.4 thiol-disulfide oxidoreductase compare
CA265_RS18725 +0.3 1.3 short-chain dehydrogenase compare
CA265_RS01225 +0.3 1.2 hypothetical protein compare
CA265_RS09445 +0.3 2.3 tetracycline resistance MFS efflux pump compare
CA265_RS17060 +0.3 1.7 adenylyl-sulfate kinase compare


Specific Phenotypes

For 5 genes in this experiment

For stress Chloramphenicol in Pedobacter sp. GW460-11-11-14-LB5

For stress Chloramphenicol across organisms