Experiment set1IT073 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 10 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS05280 -10.1 -7.0 COG1361 S-layer family protein compare
MMP_RS06700 -9.3 -14.0 hypothetical protein compare
MMP_RS05290 -9.2 -10.1 TetR/AcrR family transcriptional regulator compare
MMP_RS01985 -8.8 -5.8 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS08210 -8.4 -2.9 phosphatidylglycerophosphatase A compare
MMP_RS04710 -8.2 -2.5 hypothetical protein compare
MMP_RS06295 -8.2 -9.7 methanogenesis marker 14 protein compare
MMP_RS01380 -8.1 -4.2 PHP domain-containing protein compare
MMP_RS01175 -8.1 -4.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06400 -7.9 -2.4 4Fe-4S binding protein compare
MMP_RS07445 -7.9 -8.3 helix-turn-helix domain-containing protein compare
MMP_RS05285 -7.7 -7.5 MMPL family transporter compare
MMP_RS06105 -7.7 -10.8 hydrogenase maturation peptidase HycI compare
MMP_RS02145 -7.7 -9.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS06895 -7.5 -2.3 selenocysteine-specific translation elongation factor compare
MMP_RS07075 -7.5 -5.9 phosphomannomutase/phosphoglucomutase compare
MMP_RS08650 -7.4 -3.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06730 -7.3 -2.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS07390 -7.2 -3.1 cell division protein FtsZ compare
MMP_RS07600 -7.2 -3.3 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01500 -7.2 -2.8 CBS domain-containing protein compare
MMP_RS08715 -7.2 -2.5 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08745 -7.2 -8.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS09020 -7.0 -2.1 hypothetical protein compare
MMP_RS07380 -7.0 -2.7 transcription elongation factor Spt5 compare
MMP_RS03700 -7.0 -11.8 sodium:proton antiporter compare
MMP_RS01800 -7.0 -5.1 TIGR00303 family protein compare
MMP_RS06680 -7.0 -11.4 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS00130 -7.0 -1.2 nickel-responsive transcriptional regulator NikR compare
MMP_RS01020 -6.9 -1.2 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01955 -6.8 -4.0 hypothetical protein compare
MMP_RS06670 -6.8 -7.9 glucose-6-phosphate isomerase compare
MMP_RS03580 -6.7 -4.0 signal recognition particle-docking protein FtsY compare
MMP_RS04870 -6.6 -5.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS08460 -6.6 -2.8 proteasome-activating nucleotidase compare
MMP_RS04780 -6.5 -3.2 ribonuclease P compare
MMP_RS06110 -6.5 -3.4 ATP-dependent protease LonB compare
MMP_RS08720 -6.5 -2.2 4Fe-4S binding protein compare
MMP_RS07330 -6.4 -18.5 membrane protein compare
MMP_RS08440 -6.4 -3.3 cell division protein SepF compare
MMP_RS02280 -6.3 -1.1 DUF211 domain-containing protein compare
MMP_RS03960 -6.2 -1.1 hypothetical protein compare
MMP_RS01925 -6.0 -13.1 DUF1616 domain-containing protein compare
MMP_RS07710 -6.0 -7.5 cell division protein FtsZ compare
MMP_RS03600 -6.0 -3.1 triose-phosphate isomerase compare
MMP_RS06355 -5.8 -2.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS00300 -5.7 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01005 -5.7 -1.4 riboflavin synthase compare
MMP_RS01225 -5.5 -5.0 DUF5379 domain-containing protein compare
MMP_RS06285 -5.5 -3.0 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08300 -5.5 -1.6 metal-sulfur cluster assembly factor compare
MMP_RS05550 -5.4 -0.9 cation:proton antiporter compare
MMP_RS01830 -5.4 -1.3 tRNA-Val compare
MMP_RS04685 -5.4 -3.8 DUF126 domain-containing protein compare
MMP_RS01975 -5.4 -16.1 hypothetical protein compare
MMP_RS01265 -5.3 -2.7 hypothetical protein compare
MMP_RS06685 -5.3 -9.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS01900 -5.2 -18.1 hypothetical protein compare
MMP_RS08635 -5.2 -2.2 UbiA family prenyltransferase compare
MMP_RS00515 -5.2 -1.3 DUF655 domain-containing protein compare
MMP_RS02240 -5.1 -4.1 methanogenesis marker 7 protein compare
MMP_RS07635 -5.1 -7.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01880 -5.1 -8.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS02800 -5.1 -4.8 nucleotidyltransferase domain-containing protein compare
MMP_RS07005 -5.1 -0.9 4Fe-4S binding protein compare
MMP_RS01385 -5.1 -0.9 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS05640 -5.0 -8.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS00695 -5.0 -1.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02875 -5.0 -8.1 chorismate pyruvate-lyase family protein compare
MMP_RS01220 -4.9 -6.5 hypothetical protein compare
MMP_RS06630 -4.9 -1.2 UPF0058 family protein compare
MMP_RS00985 -4.8 -5.2 CDC48 family AAA ATPase compare
MMP_RS08790 -4.8 -3.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS06625 -4.7 -2.8 DNA primase compare
MMP_RS06120 -4.7 -2.6 UPF0147 family protein compare
MMP_RS01905 -4.7 -15.1 glycosyltransferase compare
MMP_RS00110 -4.7 -3.5 hypothetical protein compare
MMP_RS01755 -4.6 -1.6 DUF2097 domain-containing protein compare
MMP_RS05515 -4.6 -5.2 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS02900 -4.5 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04775 -4.5 -3.8 adenosylhomocysteinase compare
MMP_RS07630 -4.5 -1.8 ATP-binding cassette domain-containing protein compare
MMP_RS08435 -4.5 -2.3 Era-like GTP-binding protein compare
MMP_RS08195 -4.5 -10.3 hypothetical protein compare
MMP_RS07200 -4.4 -7.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS03445 -4.4 -1.3 methanogenesis marker 17 protein compare
MMP_RS05345 -4.4 -7.9 hypothetical protein compare
MMP_RS01875 -4.3 -9.4 N-acetyltransferase compare
MMP_RS01960 -4.3 -1.0 hypothetical protein compare
MMP_RS06350 -4.3 -5.9 HesA/MoeB/ThiF family protein compare
MMP_RS01885 -4.2 -7.6 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07545 -4.2 -1.4 HTH domain-containing protein compare
MMP_RS03025 -4.2 -5.5 molybdenum cofactor guanylyltransferase compare
MMP_RS02135 -4.2 -3.3 DUF5612 domain-containing protein compare
MMP_RS04890 -4.1 -1.0 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06230 -4.1 -3.5 helix-turn-helix domain-containing protein compare
MMP_RS07525 -4.0 -4.7 4Fe-4S binding protein compare
MMP_RS01325 -4.0 -2.6 dihydroneopterin aldolase family protein compare
MMP_RS01890 -4.0 -5.8 nucleotide sugar dehydrogenase compare
MMP_RS07820 -3.9 -5.0 UPF0104 family protein compare
MMP_RS01795 -3.9 -2.2 methanogenesis marker 6 protein compare
MMP_RS00685 -3.9 -3.5 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07350 -3.8 -2.0 preprotein translocase subunit Sec61beta compare
MMP_RS06270 -3.8 -5.5 TIGR00300 family protein compare
MMP_RS03110 -3.6 -5.5 glycosyltransferase family 2 protein compare
MMP_RS06020 -3.6 -5.2 archaeoflavoprotein AfpA compare
MMP_RS03015 -3.6 -9.1 GTP 3' 8-cyclase MoaA compare
MMP_RS06035 -3.5 -9.1 glycosyltransferase family 2 protein compare
MMP_RS06940 -3.5 -3.3 polyprenyl diphosphate synthase compare
MMP_RS07845 -3.5 -2.8 LL-diaminopimelate aminotransferase compare
MMP_RS02355 -3.5 -2.9 30S ribosomal protein S27ae compare
MMP_RS05635 -3.4 -10.2 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS03035 -3.4 -3.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS04720 -3.4 -2.9 DedA family protein compare
MMP_RS01915 -3.4 -13.1 DUF354 domain-containing protein compare
MMP_RS00305 -3.3 -2.0 phosphoribosyl-ATP diphosphatase compare
MMP_RS08155 -3.3 -6.6 hypothetical protein compare
MMP_RS01910 -3.3 -9.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS05525 -3.3 -6.1 calcium/sodium antiporter compare
MMP_RS03435 -3.2 -1.7 ketol-acid reductoisomerase compare
MMP_RS01895 -3.2 -11.5 flippase compare
MMP_RS06130 -3.2 -4.1 peptidylprolyl isomerase compare
MMP_RS03315 -3.2 -1.5 ferrous iron transport protein A compare
MMP_RS06315 -3.1 -1.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00915 -3.1 -8.3 DUF116 domain-containing protein compare
MMP_RS03205 -3.1 -1.3 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08840 -3.1 -11.7 class I SAM-dependent methyltransferase compare
MMP_RS00120 -3.0 -7.8 LysR family transcriptional regulator compare
MMP_RS01725 -3.0 -3.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS03640 -2.9 -3.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05430 -2.9 -2.2 TIGR00288 family NYN domain-containing protein compare
MMP_RS07420 -2.9 -2.7 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03400 -2.9 -2.2 archease compare
MMP_RS04875 -2.9 -4.2 energy-converting hydrogenase B subunit P compare
MMP_RS02195 -2.9 -3.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08645 -2.9 -8.3 UPF0179 family protein compare
MMP_RS07605 -2.8 -3.3 diadenylate cyclase compare
MMP_RS07875 -2.8 -6.3 hypothetical protein compare
MMP_RS01970 -2.8 -12.8 TIGR04279 domain-containing protein compare
MMP_RS01610 -2.8 -3.6 hypothetical protein compare
MMP_RS03155 -2.8 -8.0 precorrin-6A reductase compare
MMP_RS01920 -2.7 -13.4 glycosyltransferase family 2 protein compare
MMP_RS01365 -2.7 -1.5 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06705 -2.7 -4.8 formate/nitrite transporter family protein compare
MMP_RS01335 -2.7 -2.4 prefoldin subunit beta compare
MMP_RS06310 -2.7 -3.9 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS06345 -2.7 -9.8 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS00335 -2.7 -5.0 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS08590 -2.6 -4.0 flagellin compare
MMP_RS05555 -2.6 -1.9 DUF4040 domain-containing protein compare
MMP_RS06925 -2.6 -2.0 ribonuclease VapC4 compare
MMP_RS02100 -2.5 -5.3 metallophosphoesterase compare
MMP_RS05580 -2.5 -13.3 glycosyltransferase compare
MMP_RS05250 -2.5 -1.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS08600 -2.5 -2.6 flagellar protein D compare
MMP_RS08595 -2.4 -1.0 flagellar protein C compare
MMP_RS04090 -2.4 -2.7 hypothetical protein compare
MMP_RS08605 -2.4 -4.3 flagellar protein E compare
MMP_RS02110 -2.4 -2.2 hypothetical protein compare
MMP_RS02165 -2.3 -6.9 tRNA-dihydrouridine synthase compare
MMP_RS08070 -2.3 -6.3 DUF2096 domain-containing protein compare
MMP_RS03020 -2.3 -5.9 peptidylprolyl isomerase compare
MMP_RS07750 -2.3 -3.3 DUF357 domain-containing protein compare
MMP_RS01445 -2.3 -8.8 hypothetical protein compare
MMP_RS06475 -2.2 -4.4 FAD-dependent oxidoreductase compare
MMP_RS00810 -2.2 -6.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01665 -2.2 -4.6 DUF2111 domain-containing protein compare
MMP_RS04585 -2.2 -7.8 AIR synthase related protein compare
MMP_RS06980 -2.1 -6.1 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07385 -2.1 -1.6 protein translocase SEC61 complex subunit gamma compare
MMP_RS06600 -2.1 -1.1 class III signal peptide-containing protein compare
MMP_RS00060 -2.0 -2.3 3-dehydroquinate synthase II compare
MMP_RS01930 -2.0 -11.5 hypothetical protein compare
MMP_RS08320 -2.0 -6.0 molybdopterin molybdotransferase MoeA compare
MMP_RS01935 -2.0 -9.3 DUF58 domain-containing protein compare
MMP_RS06175 -2.0 -5.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS03475 -1.9 -0.8 hypothetical protein compare
MMP_RS06340 -1.9 -6.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05540 -1.9 -2.5 hypothetical protein compare
MMP_RS03095 -1.9 -5.3 diphthine synthase compare
MMP_RS07705 -1.9 -8.1 transcriptional regulator compare
MMP_RS07795 -1.9 -7.7 site-2 protease family protein compare
MMP_RS01940 -1.9 -4.6 MoxR family ATPase compare
MMP_RS01945 -1.9 -6.6 DUF4350 domain-containing protein compare
MMP_RS05925 -1.8 -4.0 small nuclear ribonucleoprotein compare
MMP_RS05445 -1.8 -8.5 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS06375 -1.8 -3.5 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS01180 -1.8 -1.4 XTP/dITP diphosphatase compare
MMP_RS04695 -1.8 -6.6 selenide water dikinase SelD compare
MMP_RS03140 -1.8 -8.4 hypothetical protein compare
MMP_RS05815 -1.8 -1.8 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08165 -1.8 -1.4 phosphoglycerate dehydrogenase compare
MMP_RS02885 -1.7 -8.7 molybdopterin biosynthesis protein compare
MMP_RS01950 -1.7 -7.4 hypothetical protein compare
MMP_RS01545 -1.7 -1.1 CBS domain-containing protein compare
MMP_RS07730 -1.7 -1.9 pyruvate synthase subunit beta compare
MMP_RS02130 -1.6 -3.8 zinc metalloprotease HtpX compare
MMP_RS07090 -1.6 -7.3 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01750 -1.6 -7.1 DUF63 family protein compare
MMP_RS07580 -1.6 -2.5 DUF356 domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Ethanolamine in Methanococcus maripaludis S2

For mixed community Ethanolamine across organisms