Experiment set1IT072 for Pseudomonas fluorescens FW300-N2E3

Compare to:

a-Ketoglutaric acid disodium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -5.7 -3.9 O-succinylhomoserine sulfhydrylase compare
AO353_13070 -4.8 -8.0 phosphoserine phosphatase compare
AO353_05115 -4.8 -9.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_02070 -4.8 -7.3 prephenate dehydratase compare
AO353_00430 -4.7 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12115 -4.6 -3.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08185 -4.6 -10.3 methionine biosynthesis protein MetW compare
AO353_20625 -4.5 -4.4 3-isopropylmalate dehydratase compare
AO353_20540 -4.5 -9.2 aromatic amino acid aminotransferase compare
AO353_20635 -4.5 -14.2 3-isopropylmalate dehydrogenase compare
AO353_10670 -4.5 -9.5 shikimate dehydrogenase compare
AO353_07230 -4.4 -18.1 anthranilate synthase compare
AO353_12070 -4.4 -9.7 imidazoleglycerol-phosphate dehydratase compare
AO353_02075 -4.4 -11.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_03810 -4.3 -16.2 Alpha-ketoglutarate permease, MFS superfamily (from data) conserved
AO353_14505 -4.3 -13.8 ketol-acid reductoisomerase compare
AO353_07220 -4.3 -9.1 anthranilate synthase compare
AO353_14500 -4.2 -6.4 acetolactate synthase 3 regulatory subunit compare
AO353_14400 -4.2 -4.1 Fis family transcriptional regulator compare
AO353_12520 -4.2 -13.7 glutamate synthase compare
AO353_10710 -4.2 -5.0 tryptophan synthase subunit beta compare
AO353_12085 -4.2 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08685 -4.1 -9.9 N-acetylglutamate synthase compare
AO353_12515 -4.1 -24.3 glutamate synthase compare
AO353_13165 -4.1 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08475 -4.0 -11.6 phosphoserine phosphatase compare
AO353_20665 -3.9 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08180 -3.8 -15.8 homoserine O-acetyltransferase compare
AO353_08345 -3.7 -11.0 dihydroxy-acid dehydratase compare
AO353_12075 -3.7 -10.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_11775 -3.7 -9.7 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_07155 -3.6 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_22800 -3.6 -5.5 sulfite reductase compare
AO353_14495 -3.6 -14.8 acetolactate synthase 3 catalytic subunit compare
AO353_05110 -3.5 -13.0 histidinol dehydrogenase compare
AO353_09240 -3.5 -5.4 acetylglutamate kinase compare
AO353_04105 -3.5 -10.9 argininosuccinate synthase compare
AO353_12360 -3.5 -11.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_19060 -3.4 -6.1 CysB family transcriptional regulator compare
AO353_03800 -3.4 -14.4 cytochrome C biogenesis protein CcmE conserved
AO353_08510 -3.3 -7.1 3-phosphoglycerate dehydrogenase compare
AO353_09000 -3.3 -8.0 argininosuccinate lyase compare
AO353_20620 -3.3 -6.6 isopropylmalate isomerase compare
AO353_07215 -3.2 -8.2 anthranilate phosphoribosyltransferase compare
AO353_15925 -3.2 -13.3 2-isopropylmalate synthase compare
AO353_12500 -3.1 -3.0 shikimate kinase compare
AO353_02685 -3.1 -4.5 phosphoribosylglycinamide formyltransferase compare
AO353_12090 -3.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_03805 -3.1 -4.2 C4-dicarboxylate ABC transporter conserved
AO353_08015 -3.1 -8.9 5,10-methylenetetrahydrofolate reductase compare
AO353_07210 -3.0 -5.6 indole-3-glycerol-phosphate synthase compare
AO353_14115 -3.0 -8.6 gamma-glutamyl kinase compare
AO353_04155 -3.0 -14.1 ornithine carbamoyltransferase compare
AO353_14370 -3.0 -8.8 glucose-6-phosphate isomerase compare
AO353_12365 -2.7 -3.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_16940 -2.7 -8.2 deoxycytidine triphosphate deaminase compare
AO353_08165 -2.7 -3.6 pyrroline-5-carboxylate reductase compare
AO353_12460 -2.7 -10.5 malate dehydrogenase compare
AO353_06495 -2.6 -6.2 gamma-glutamyl phosphate reductase compare
AO353_02975 -2.5 -4.9 aspartate kinase compare
AO353_03020 -2.4 -6.9 arginine N-succinyltransferase compare
AO353_05105 -2.3 -9.8 histidinol-phosphate aminotransferase compare
AO353_06040 -2.3 -5.2 exodeoxyribonuclease V subunit alpha compare
AO353_15185 -2.3 -6.7 ATPase compare
AO353_09285 -2.3 -10.3 reactive intermediate/imine deaminase compare
AO353_10705 -2.3 -4.6 tryptophan synthase subunit alpha compare
AO353_00825 -2.3 -5.5 porin compare
AO353_14420 -2.3 -5.5 molecular chaperone DnaK compare
AO353_27650 -2.2 -5.7 cell division protein FtsK compare
AO353_14150 -2.2 -3.2 peptidylprolyl isomerase compare
AO353_13640 -2.0 -5.3 histidine kinase compare
AO353_04175 -2.0 -6.1 glycerol uptake facilitator GlpF compare
AO353_08780 -1.9 -7.8 5-formyltetrahydrofolate cyclo-ligase compare
AO353_03590 -1.9 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_07355 -1.9 -7.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_00750 -1.8 -4.8 GntR family transcriptional regulator compare
AO353_09890 -1.8 -4.8 phosphate ABC transporter ATP-binding protein compare
AO353_03815 -1.8 -2.3 heme utilization protein compare
AO353_10455 -1.8 -2.6 tRNA modification GTPase MnmE compare
AO353_24130 -1.8 -4.1 hypothetical protein compare
AO353_02465 -1.8 -2.0 hypothetical protein compare
AO353_15555 -1.7 -5.8 fumarylacetoacetase compare
AO353_03015 -1.7 -5.6 arginine N-succinyltransferase compare
AO353_06045 -1.7 -8.1 exodeoxyribonuclease V subunit beta compare
AO353_10430 -1.7 -4.0 chromosome partitioning protein ParB compare
AO353_03795 -1.7 -3.9 fumarate hydratase compare
AO353_02250 -1.7 -2.2 chorismate synthase compare
AO353_05420 -1.7 -2.4 peptide chain release factor 3 compare
AO353_04565 -1.7 -6.5 nucleoid-associated protein compare
AO353_20175 -1.6 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_10320 -1.6 -2.5 hypothetical protein compare
AO353_10945 -1.6 -3.6 cytochrome C compare
AO353_01685 -1.6 -2.9 hypothetical protein compare
AO353_05075 -1.6 -8.7 adenylylsulfate kinase compare
AO353_10025 -1.5 -10.6 pyruvate carboxylase subunit B compare
AO353_21625 -1.5 -2.9 Fe/S biogenesis protein NfuA compare
AO353_00490 -1.5 -3.9 PasA protein compare
AO353_14405 -1.5 -7.7 ATPase compare
AO353_06050 -1.5 -6.1 exodeoxyribonuclease V subunit gamma compare
AO353_16805 -1.4 -6.2 recombinase RecA compare
AO353_05080 -1.4 -8.8 sulfate adenylyltransferase compare
AO353_02810 -1.4 -6.8 histidine kinase compare
AO353_13160 -1.4 -2.6 membrane protease HflC compare
AO353_10435 -1.4 -8.0 chromosome partitioning protein compare
AO353_17445 -1.4 -3.5 hypothetical protein compare
AO353_07525 -1.3 -9.7 biotin synthase compare
AO353_10030 -1.3 -8.1 pyruvate carboxylase subunit A compare
AO353_13140 -1.3 -4.9 tRNA dimethylallyltransferase compare
AO353_10725 -1.3 -1.9 dodecin flavoprotein compare
AO353_11850 -1.3 -4.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_14595 -1.3 -6.2 carbonate dehydratase compare
AO353_04355 -1.3 -2.3 homoserine dehydrogenase compare
AO353_20095 -1.3 -5.0 histidine kinase compare
AO353_05690 -1.3 -3.4 SsrA-binding protein compare
AO353_08485 -1.3 -8.4 threonine dehydratase compare
AO353_07315 -1.3 -2.3 rRNA methyltransferase compare
AO353_03715 -1.2 -2.7 H-NS histone compare
AO353_10035 -1.2 -6.4 LysR family transcriptional regulator compare
AO353_07075 -1.2 -4.1 elongation factor Tu compare
AO353_07515 -1.2 -2.1 transporter compare
AO353_06720 -1.2 -2.4 NrdR family transcriptional regulator compare
AO353_03365 -1.2 -6.5 transcriptional regulator compare
AO353_23285 -1.2 -3.2 hypothetical protein compare
AO353_11165 -1.1 -6.3 hypothetical protein compare
AO353_02060 -1.1 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_05130 -1.1 -1.8 anti-anti-sigma factor compare
AO353_09030 -1.1 -1.8 iron donor protein CyaY compare
AO353_01375 -1.1 -5.8 phosphate acyltransferase compare
AO353_13925 -1.1 -2.4 XRE family transcriptional regulator compare
AO353_13245 -1.1 -4.8 hypothetical protein compare
AO353_03005 -1.1 -4.8 succinylarginine dihydrolase compare
AO353_09440 -1.1 -2.3 type VI secretion protein compare
AO353_11530 -1.1 -5.9 diguanylate cyclase compare
AO353_22280 -1.0 -2.6 hypothetical protein compare
AO353_02720 -1.0 -4.4 cysteine synthase compare
AO353_19145 -1.0 -3.5 protease HtpX compare
AO353_13155 -1.0 -2.9 hypothetical protein compare
AO353_23410 -1.0 -2.0 hypothetical protein compare
AO353_10445 -1.0 -1.7 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_12420 -1.0 -3.1 predicted FeS cluster maintenance protein (from data) compare
AO353_12510 -1.0 -6.8 cell division protein compare
AO353_08880 -1.0 -2.3 exopolyphosphatase compare
AO353_20170 -1.0 -3.6 trigger factor compare
AO353_10730 -1.0 -1.1 hypothetical protein compare
AO353_00495 -1.0 -2.1 DNA topoisomerase I compare
AO353_08265 -1.0 -4.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_08100 -0.9 -2.4 chemotaxis protein CheY compare
AO353_13225 -0.9 -1.6 50S ribosomal protein L9 compare
AO353_01780 -0.9 -6.4 heat-shock protein Hsp90 compare
AO353_23215 -0.9 -3.3 calpastatin compare
AO353_00865 -0.9 -5.7 phosphoenolpyruvate synthase compare
AO353_28035 -0.9 -3.7 hypothetical protein compare
AO353_01410 -0.9 -2.3 ribonuclease E compare
AO353_03025 -0.9 -2.8 acetylornithine aminotransferase compare
AO353_10985 -0.9 -2.0 hypothetical protein compare
AO353_03580 -0.9 -2.6 ATP-dependent DNA helicase RuvB compare
AO353_05150 -0.9 -3.7 ABC transporter ATP-binding protein compare
AO353_21615 -0.9 -6.4 methionine synthase compare
AO353_02195 -0.9 -3.6 spermidine synthase compare
AO353_20185 -0.9 -4.3 DNA-binding protein compare
AO353_14935 -0.9 -2.7 aminopeptidase compare
AO353_05520 -0.9 -3.0 nicotinate-nucleotide pyrophosphorylase compare
AO353_04520 -0.9 -3.2 elongation factor 4 compare
AO353_09260 -0.9 -4.4 ribonuclease PH compare
AO353_13080 -0.9 -4.4 thiosulfate sulfurtransferase compare
AO353_00610 -0.9 -1.3 cytochrome C oxidase Cbb3 compare
AO353_13100 -0.8 -1.4 GTPase RsgA compare
AO353_03585 -0.8 -1.4 ATP-dependent DNA helicase RuvA compare
AO353_20370 -0.8 -2.0 MerR family transcriptional regulator compare
AO353_14410 -0.8 -4.8 MFS transporter compare
AO353_16845 -0.8 -4.8 LysR family transcriptional regulator compare
AO353_12105 -0.8 -4.2 peptidase S41 compare
AO353_02550 -0.8 -3.1 TetR family transcriptional regulator compare
AO353_11770 -0.8 -1.4 molecular chaperone Hsp33 compare
AO353_03615 -0.8 -2.4 cold-shock protein compare
AO353_09885 -0.8 -2.4 transcriptional regulator PhoU compare
AO353_07555 -0.8 -2.3 glycine cleavage system protein R compare
AO353_03670 -0.8 -3.4 ornithine acetyltransferase compare
AO353_18765 -0.8 -2.9 hypothetical protein compare
AO353_04180 -0.8 -4.9 glycerol kinase compare
AO353_04365 -0.8 -3.4 recombinase XerD compare
AO353_02970 -0.8 -1.7 carbon storage regulator compare
AO353_05125 -0.8 -2.9 BolA family transcriptional regulator compare
AO353_12880 -0.8 -1.1 ADP-heptose--LPS heptosyltransferase compare
AO353_20585 -0.8 -2.2 TetR family transcriptional regulator compare
AO353_15250 -0.8 -2.3 cytochrome B compare
AO353_28725 -0.8 -2.6 hypothetical protein compare
AO353_20630 -0.7 -3.9 SAM-dependent methyltransferase compare
AO353_03820 -0.7 -2.2 Asp/Glu/hydantoin racemase compare
AO353_11945 -0.7 -1.2 4-oxalocrotonate tautomerase compare
AO353_18960 -0.7 -1.8 terminase compare
AO353_12240 -0.7 -3.2 histidine utilization repressor compare
AO353_02040 -0.7 -1.9 integration host factor subunit beta compare
AO353_26190 -0.7 -2.9 hypothetical protein compare
AO353_04220 -0.7 -3.7 chemotaxis protein CheY compare
AO353_08045 -0.7 -5.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_21655 -0.7 -2.5 cobalamin biosynthesis protein CobW compare
AO353_10825 -0.7 -5.5 hypothetical protein compare
AO353_07520 -0.7 -5.3 8-amino-7-oxononanoate synthase compare
AO353_02005 -0.7 -1.6 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source a-Ketoglutaric acid disodium salt hydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source a-Ketoglutaric acid disodium salt hydrate across organisms