Experiment set1IT072 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 5 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS01020 -2.5 -2.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01755 -2.3 -2.9 DUF2097 domain-containing protein compare
MMP_RS01225 -2.3 -10.6 DUF5379 domain-containing protein compare
MMP_RS06700 -2.1 -13.5 hypothetical protein compare
MMP_RS01175 -2.1 -10.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05280 -2.0 -13.9 COG1361 S-layer family protein compare
MMP_RS05285 -2.0 -9.6 MMPL family transporter compare
MMP_RS05290 -2.0 -10.7 TetR/AcrR family transcriptional regulator compare
MMP_RS04710 -1.8 -3.4 hypothetical protein compare
MMP_RS06295 -1.8 -9.6 methanogenesis marker 14 protein compare
MMP_RS01380 -1.7 -5.9 PHP domain-containing protein compare
MMP_RS05430 -1.6 -6.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS06355 -1.6 -5.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03445 -1.6 -1.9 methanogenesis marker 17 protein compare
MMP_RS03475 -1.6 -1.2 hypothetical protein compare
MMP_RS07390 -1.6 -4.3 cell division protein FtsZ compare
MMP_RS07445 -1.5 -7.3 helix-turn-helix domain-containing protein compare
MMP_RS01500 -1.5 -4.0 CBS domain-containing protein compare
MMP_RS08650 -1.5 -4.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08720 -1.5 -2.0 4Fe-4S binding protein compare
MMP_RS01985 -1.5 -4.6 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS01220 -1.4 -8.6 hypothetical protein compare
MMP_RS00300 -1.4 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07350 -1.4 -2.5 preprotein translocase subunit Sec61beta compare
MMP_RS08745 -1.4 -6.0 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS03400 -1.4 -3.3 archease compare
MMP_RS07635 -1.4 -8.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07845 -1.3 -2.8 LL-diaminopimelate aminotransferase compare
MMP_RS02145 -1.3 -6.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS06680 -1.3 -10.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05515 -1.3 -6.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03015 -1.2 -8.0 GTP 3' 8-cyclase MoaA compare
MMP_RS05550 -1.2 -1.1 cation:proton antiporter compare
MMP_RS01955 -1.2 -3.9 hypothetical protein compare
MMP_RS06670 -1.2 -4.2 glucose-6-phosphate isomerase compare
MMP_RS06685 -1.2 -8.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06105 -1.2 -6.1 hydrogenase maturation peptidase HycI compare
MMP_RS00810 -1.2 -6.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03700 -1.2 -6.4 sodium:proton antiporter compare
MMP_RS03600 -1.2 -2.5 triose-phosphate isomerase compare
MMP_RS01265 -1.2 -3.3 hypothetical protein compare
MMP_RS03580 -1.2 -4.1 signal recognition particle-docking protein FtsY compare
MMP_RS06350 -1.1 -6.8 HesA/MoeB/ThiF family protein compare
MMP_RS01925 -1.1 -7.8 DUF1616 domain-containing protein compare
MMP_RS07380 -1.1 -2.5 transcription elongation factor Spt5 compare
MMP_RS08595 -1.1 -1.6 flagellar protein C compare
MMP_RS07525 -1.1 -5.4 4Fe-4S binding protein compare
MMP_RS06940 -1.1 -3.2 polyprenyl diphosphate synthase compare
MMP_RS02195 -1.1 -4.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS03640 -1.1 -3.0 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08320 -1.1 -6.1 molybdopterin molybdotransferase MoeA compare
MMP_RS05555 -1.1 -1.7 DUF4040 domain-containing protein compare
MMP_RS06625 -1.1 -2.7 DNA primase compare
MMP_RS02240 -1.0 -2.9 methanogenesis marker 7 protein compare
MMP_RS03300 -1.0 -1.0 TOBE domain-containing protein compare
MMP_RS07860 -1.0 -1.2 hypothetical protein compare
MMP_RS01890 -1.0 -4.2 nucleotide sugar dehydrogenase compare
MMP_RS03385 -1.0 -1.5 cation diffusion facilitator family transporter compare
MMP_RS03035 -1.0 -4.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06230 -1.0 -1.8 helix-turn-helix domain-containing protein compare
MMP_RS01005 -1.0 -1.9 riboflavin synthase compare
MMP_RS07075 -1.0 -4.5 phosphomannomutase/phosphoglucomutase compare
MMP_RS03205 -1.0 -1.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02800 -1.0 -5.9 nucleotidyltransferase domain-containing protein compare
MMP_RS03305 -1.0 -5.2 winged helix-turn-helix domain-containing protein compare
MMP_RS01905 -1.0 -7.9 glycosyltransferase compare
MMP_RS01900 -1.0 -8.0 hypothetical protein compare
MMP_RS03025 -1.0 -3.7 molybdenum cofactor guanylyltransferase compare
MMP_RS02355 -1.0 -2.8 30S ribosomal protein S27ae compare
MMP_RS06705 -1.0 -5.7 formate/nitrite transporter family protein compare
MMP_RS06630 -1.0 -1.2 UPF0058 family protein compare
MMP_RS06720 -1.0 -5.5 response regulator transcription factor compare
MMP_RS06345 -1.0 -6.3 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS00695 -1.0 -1.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06130 -1.0 -3.1 peptidylprolyl isomerase compare
MMP_RS00620 -0.9 -6.3 4Fe-4S binding protein compare
MMP_RS00130 -0.9 -1.5 nickel-responsive transcriptional regulator NikR compare
MMP_RS01880 -0.9 -6.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06285 -0.9 -2.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03435 -0.9 -1.5 ketol-acid reductoisomerase compare
MMP_RS07710 -0.9 -4.7 cell division protein FtsZ compare
MMP_RS02135 -0.9 -3.6 DUF5612 domain-containing protein compare
MMP_RS06715 -0.9 -7.4 cache domain-containing protein compare
MMP_RS04685 -0.9 -2.4 DUF126 domain-containing protein compare
MMP_RS07600 -0.9 -2.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06400 -0.9 -2.1 4Fe-4S binding protein compare
MMP_RS05640 -0.9 -4.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS04695 -0.8 -4.6 selenide water dikinase SelD compare
MMP_RS01610 -0.8 -3.5 hypothetical protein compare
MMP_RS01875 -0.8 -5.7 N-acetyltransferase compare
MMP_RS03250 -0.8 -3.2 MJ1244 family protein compare
MMP_RS07545 -0.8 -1.5 HTH domain-containing protein compare
MMP_RS08460 -0.8 -1.9 proteasome-activating nucleotidase compare
MMP_RS01195 -0.8 -1.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06035 -0.8 -5.5 glycosyltransferase family 2 protein compare
MMP_RS02885 -0.8 -6.6 molybdopterin biosynthesis protein compare
MMP_RS01800 -0.8 -3.2 TIGR00303 family protein compare
MMP_RS07605 -0.8 -2.0 diadenylate cyclase compare
MMP_RS07330 -0.8 -6.6 membrane protein compare
MMP_RS02010 -0.8 -5.4 PHP domain-containing protein compare
MMP_RS02165 -0.8 -5.1 tRNA-dihydrouridine synthase compare
MMP_RS00985 -0.8 -3.9 CDC48 family AAA ATPase compare
MMP_RS01885 -0.8 -3.5 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS08790 -0.8 -1.5 translation initiation factor IF-2 subunit alpha compare
MMP_RS00915 -0.7 -4.5 DUF116 domain-containing protein compare
MMP_RS05635 -0.7 -5.3 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS01795 -0.7 -1.5 methanogenesis marker 6 protein compare
MMP_RS06270 -0.7 -3.8 TIGR00300 family protein compare
MMP_RS01240 -0.7 -1.0 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS07620 -0.7 -2.4 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS04870 -0.7 -3.5 TIGR02253 family HAD-type hydrolase compare
MMP_RS08435 -0.7 -2.1 Era-like GTP-binding protein compare
MMP_RS00520 -0.7 -1.2 RNA polymerase Rpb4 family protein compare
MMP_RS03155 -0.7 -4.4 precorrin-6A reductase compare
MMP_RS08210 -0.7 -1.8 phosphatidylglycerophosphatase A compare
MMP_RS04720 -0.7 -2.2 DedA family protein compare
MMP_RS02280 -0.7 -1.0 DUF211 domain-containing protein compare
MMP_RS00685 -0.7 -2.6 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07630 -0.7 -1.3 ATP-binding cassette domain-containing protein compare
MMP_RS09020 -0.7 -1.3 hypothetical protein compare
MMP_RS06925 -0.7 -1.7 ribonuclease VapC4 compare
MMP_RS07420 -0.7 -2.7 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06730 -0.7 -1.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS01180 -0.7 -1.1 XTP/dITP diphosphatase compare
MMP_RS06980 -0.7 -3.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS06020 -0.7 -2.9 archaeoflavoprotein AfpA compare
MMP_RS08590 -0.6 -2.5 flagellin compare
MMP_RS08300 -0.6 -1.0 metal-sulfur cluster assembly factor compare
MMP_RS04875 -0.6 -3.6 energy-converting hydrogenase B subunit P compare
MMP_RS05345 -0.6 -3.2 hypothetical protein compare
MMP_RS06865 -0.6 -1.1 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS01915 -0.6 -5.0 DUF354 domain-containing protein compare
MMP_RS05920 -0.6 -0.6 50S ribosomal protein L37e compare
MMP_RS04585 -0.6 -4.2 AIR synthase related protein compare
MMP_RS07735 -0.6 -0.6 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS03960 -0.6 -0.8 hypothetical protein compare
MMP_RS07705 -0.6 -3.9 transcriptional regulator compare
MMP_RS01545 -0.6 -0.9 CBS domain-containing protein compare
MMP_RS05540 -0.6 -2.5 hypothetical protein compare
MMP_RS00120 -0.6 -4.2 LysR family transcriptional regulator compare
MMP_RS01895 -0.6 -4.8 flippase compare
MMP_RS01910 -0.6 -3.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS03110 -0.6 -2.6 glycosyltransferase family 2 protein compare
MMP_RS08840 -0.6 -3.8 class I SAM-dependent methyltransferase compare
MMP_RS05910 -0.6 -1.9 cell division ATPase MinD compare
MMP_RS00515 -0.6 -1.0 DUF655 domain-containing protein compare
MMP_RS03080 -0.6 -1.9 universal stress protein compare
MMP_RS02235 -0.6 -3.9 CBS domain-containing protein compare
MMP_RS08440 -0.6 -2.2 cell division protein SepF compare
MMP_RS07885 -0.6 -1.0 tripartite tricarboxylate transporter permease compare
MMP_RS06315 -0.6 -0.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01365 -0.6 -1.7 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS01750 -0.5 -4.1 DUF63 family protein compare
MMP_RS00060 -0.5 -1.2 3-dehydroquinate synthase II compare
MMP_RS05580 -0.5 -4.6 glycosyltransferase compare
MMP_RS00305 -0.5 -0.9 phosphoribosyl-ATP diphosphatase compare
MMP_RS08645 -0.5 -2.2 UPF0179 family protein compare
MMP_RS01975 -0.5 -4.4 hypothetical protein compare
MMP_RS02130 -0.5 -2.3 zinc metalloprotease HtpX compare
MMP_RS07750 -0.5 -2.8 DUF357 domain-containing protein compare
MMP_RS07625 -0.5 -2.1 cobalt ECF transporter T component CbiQ compare
MMP_RS06525 -0.5 -1.1 YciI family protein compare
MMP_RS07575 -0.5 -1.9 RNA ligase partner protein compare
MMP_RS05925 -0.5 -1.7 small nuclear ribonucleoprotein compare
MMP_RS08605 -0.5 -2.6 flagellar protein E compare
MMP_RS00335 -0.5 -2.1 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS02965 -0.5 -1.6 carboxymuconolactone decarboxylase family protein compare
MMP_RS06110 -0.5 -1.8 ATP-dependent protease LonB compare
MMP_RS04605 -0.5 -2.5 cobalt ECF transporter T component CbiQ compare
MMP_RS06310 -0.5 -2.2 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS05535 -0.5 -2.9 hypothetical protein compare
MMP_RS04775 -0.5 -1.5 adenosylhomocysteinase compare
MMP_RS01945 -0.5 -3.1 DUF4350 domain-containing protein compare
MMP_RS07685 -0.5 -2.7 TIGR01212 family radical SAM protein compare
MMP_RS01385 -0.5 -0.4 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07730 -0.5 -1.1 pyruvate synthase subunit beta compare
MMP_RS02230 -0.4 -3.2 sodium-dependent transporter compare
MMP_RS05845 -0.4 -1.1 tRNA-intron lyase compare
MMP_RS03120 -0.4 -2.5 hypothetical protein compare
MMP_RS07725 -0.4 -1.8 4Fe-4S dicluster domain-containing protein compare
MMP_RS08360 -0.4 -2.0 hypothetical protein compare
MMP_RS04125 -0.4 -1.8 TetR/AcrR family transcriptional regulator compare
MMP_RS07580 -0.4 -1.6 DUF356 domain-containing protein compare
MMP_RS06900 -0.4 -1.9 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08330 -0.4 -1.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS01920 -0.4 -3.8 glycosyltransferase family 2 protein compare
MMP_RS08785 -0.4 -0.8 RNA-protein complex protein Nop10 compare
MMP_RS03020 -0.4 -2.6 peptidylprolyl isomerase compare
MMP_RS06600 -0.4 -0.7 class III signal peptide-containing protein compare
MMP_RS02405 -0.4 -1.6 hypothetical protein compare
MMP_RS07200 -0.4 -2.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS05765 -0.4 -2.4 M42 family metallopeptidase compare
MMP_RS01540 -0.4 -1.8 DUF504 domain-containing protein compare
MMP_RS03095 -0.4 -2.2 diphthine synthase compare
MMP_RS08715 -0.4 -0.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01960 -0.4 -0.5 hypothetical protein compare
MMP_RS02245 -0.4 -1.3 hypothetical protein compare
MMP_RS06370 -0.4 -2.3 biotin synthase BioB compare
MMP_RS00125 -0.4 -1.0 DUF2798 domain-containing protein compare
MMP_RS02175 -0.4 -0.5 DUF1611 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanolamine across organisms