Experiment set1IT072 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse3; 5 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS07555 +1.1 1.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS03450 +1.0 3.2 glycine synthesis protein GlyXS (from data) compare
MMP_RS00735 +0.8 3.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06325 +0.8 4.5 hypothetical protein compare
MMP_RS05355 +0.8 1.4 hypothetical protein compare
MMP_RS08310 +0.8 3.2 TMEM165/GDT1 family protein compare
MMP_RS00725 +0.7 3.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS07125 +0.7 2.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00730 +0.7 2.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS00945 +0.6 1.8 PadR family transcriptional regulator compare
MMP_RS01570 +0.6 2.1 hypothetical protein compare
MMP_RS07355 +0.6 1.1 transcription factor S compare
MMP_RS01775 +0.6 2.2 TIGR00297 family protein compare
MMP_RS06725 +0.6 4.3 hypothetical protein compare
MMP_RS06840 +0.6 0.9 DNA-directed RNA polymerase subunit N compare
MMP_RS06975 +0.6 1.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS00655 +0.6 2.6 hypothetical protein compare
MMP_RS07345 +0.5 3.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS06395 +0.5 2.1 ThiF family adenylyltransferase compare
MMP_RS07695 +0.5 2.9 DUF3236 domain-containing protein compare
MMP_RS02490 +0.5 2.6 hypothetical protein compare
MMP_RS00545 +0.5 2.8 XRE family transcriptional regulator compare
MMP_RS00315 +0.5 2.5 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07700 +0.5 3.5 DUF1188 domain-containing protein compare
MMP_RS02680 +0.5 3.4 ABC transporter permease compare
MMP_RS07645 +0.5 2.0 aldehyde dehydrogenase family protein compare
MMP_RS02605 +0.4 0.8 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS07915 +0.4 1.8 DUF4870 domain-containing protein compare
MMP_RS00395 +0.4 1.3 MGMT family protein compare
MMP_RS05835 +0.4 0.8 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS01650 +0.4 0.8 sulfurtransferase TusA family protein compare
MMP_RS00295 +0.4 2.0 gamma carbonic anhydrase family protein compare
MMP_RS06335 +0.4 2.6 HAD family hydrolase compare
MMP_RS08700 +0.4 3.0 hypothetical protein compare
MMP_RS07895 +0.4 1.9 cytochrome c compare
MMP_RS08675 +0.4 2.0 class III signal peptide-containing protein compare
MMP_RS04850 +0.4 3.5 UPF0254 family protein compare
MMP_RS07120 +0.4 3.0 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS07130 +0.4 3.1 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS06540 +0.4 1.8 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS06710 +0.4 3.0 selenium-binding protein compare
MMP_RS06015 +0.4 2.6 flavodoxin family protein compare
MMP_RS07765 +0.4 3.0 sodium:alanine symporter family protein compare
MMP_RS00430 +0.4 1.3 hypothetical protein compare
MMP_RS09050 +0.4 2.0 CAP domain-containing protein compare
MMP_RS05930 +0.4 1.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS08370 +0.4 0.5 cation:proton antiporter subunit C compare
MMP_RS01075 +0.4 0.6 hypothetical protein compare
MMP_RS01630 +0.4 2.8 N-glycosylase/DNA lyase compare
MMP_RS03420 +0.4 1.5 acetolactate synthase small subunit compare
MMP_RS03465 +0.4 0.9 adenine phosphoribosyltransferase compare
MMP_RS06005 +0.4 2.1 heavy-metal-associated domain-containing protein compare
MMP_RS04610 +0.4 1.8 Dabb family protein compare
MMP_RS01620 +0.4 1.8 hypothetical protein compare
MMP_RS06910 +0.4 2.4 RlmF-related methyltransferase compare
MMP_RS07820 +0.4 1.0 UPF0104 family protein compare
MMP_RS00675 +0.4 0.8 nitroreductase family protein compare
MMP_RS02020 +0.3 2.3 gamma-glutamylcyclotransferase compare
MMP_RS06590 +0.3 1.5 GNAT family N-acetyltransferase compare
MMP_RS02790 +0.3 0.8 class III signal peptide-containing protein compare
MMP_RS00665 +0.3 1.5 hypothetical protein compare
MMP_RS02470 +0.3 0.7 helix-turn-helix transcriptional regulator compare
MMP_RS00155 +0.3 2.5 heavy metal-binding domain-containing protein compare
MMP_RS05720 +0.3 0.9 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS03890 +0.3 2.1 DUF2540 domain-containing protein compare
MMP_RS08160 +0.3 1.8 EamA family transporter compare
MMP_RS08265 +0.3 1.8 rubrerythrin compare
MMP_RS07775 +0.3 2.5 alanine dehydrogenase compare
MMP_RS07890 +0.3 1.3 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS05820 +0.3 2.0 RNA-binding transcriptional accessory protein compare
MMP_RS08980 +0.3 1.6 hypothetical protein compare
MMP_RS08850 +0.3 2.8 hypothetical protein compare
MMP_RS02495 +0.3 1.3 hypothetical protein compare
MMP_RS00535 +0.3 0.8 TIGR00375 family protein compare
MMP_RS05970 +0.3 1.2 class II SORL domain-containing protein compare
MMP_RS01635 +0.3 2.2 thiamine pyrophosphate-dependent enzyme compare
MMP_RS00285 +0.3 2.1 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS03340 +0.3 0.4 ABC transporter ATP-binding protein compare
MMP_RS08325 +0.3 2.1 hypothetical protein compare
MMP_RS05365 +0.3 0.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS08275 +0.3 2.2 hypothetical protein compare
MMP_RS01785 +0.3 1.5 hypothetical protein compare
MMP_RS02170 +0.3 2.0 CBS domain-containing protein compare
MMP_RS03235 +0.3 1.8 tRNA pseudouridine(13) synthase TruD compare
MMP_RS05675 +0.3 1.3 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS01865 +0.3 0.8 GPR1/FUN34/YaaH family transporter compare
MMP_RS00855 +0.3 1.5 DUF367 family protein compare
MMP_RS06430 +0.3 1.4 6-carboxytetrahydropterin synthase QueD compare
MMP_RS01150 +0.3 1.8 aldo/keto reductase compare
MMP_RS06535 +0.3 1.4 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS01660 +0.3 1.0 hypothetical protein compare
MMP_RS06870 +0.3 1.1 DedA family protein compare
MMP_RS08130 +0.3 2.0 IGHMBP2 family helicase compare
MMP_RS01435 +0.3 1.5 DMT family transporter compare
MMP_RS07135 +0.3 1.6 coenzyme F420 hydrogenase subunit beta compare
MMP_RS04055 +0.3 0.7 hypothetical protein compare
MMP_RS06045 +0.3 2.0 DNA polymerase compare
MMP_RS00630 +0.3 1.6 ECF transporter S component compare
MMP_RS01675 +0.3 0.8 hypothetical protein compare
MMP_RS01980 +0.3 2.2 trimeric intracellular cation channel family protein compare
MMP_RS08615 +0.3 0.8 flagellar protein G compare
MMP_RS01055 +0.3 1.0 hypothetical protein compare
MMP_RS08500 +0.3 1.7 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS04015 +0.3 0.9 hypothetical protein compare
MMP_RS07650 +0.3 2.0 TldD/PmbA family protein compare
MMP_RS07835 +0.3 0.9 TldD/PmbA family protein compare
MMP_RS08535 +0.2 2.0 bis-aminopropyl spermidine synthase family protein compare
MMP_RS00825 +0.2 1.0 fumarylacetoacetate hydrolase family protein compare
MMP_RS06280 +0.2 1.9 alpha-glucan family phosphorylase compare
MMP_RS06555 +0.2 1.2 cupin domain-containing protein compare
MMP_RS05090 +0.2 1.3 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS04595 +0.2 1.5 hypothetical protein compare
MMP_RS00540 +0.2 1.7 PLP-dependent aminotransferase family protein compare
MMP_RS00085 +0.2 1.4 DNA cytosine methyltransferase compare
MMP_RS02310 +0.2 0.7 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS02500 +0.2 1.3 minichromosome maintenance protein MCM compare
MMP_RS07840 +0.2 1.1 ribonuclease III compare
MMP_RS04985 +0.2 1.3 DUF2180 family protein compare
MMP_RS08080 +0.2 1.7 YchF/TatD family DNA exonuclease compare
MMP_RS00375 +0.2 1.8 ammonium transporter compare
MMP_RS00080 +0.2 1.4 RecB-family nuclease compare
MMP_RS03775 +0.2 1.1 4Fe-4S dicluster domain-containing protein compare
MMP_RS07985 +0.2 1.9 nitroreductase family protein compare
MMP_RS00290 +0.2 1.3 hypothetical protein compare
MMP_RS02725 +0.2 1.8 molybdate ABC transporter permease subunit compare
MMP_RS06930 +0.2 1.5 MBL fold metallo-hydrolase compare
MMP_RS08480 +0.2 1.7 molybdate ABC transporter substrate-binding protein compare
MMP_RS08315 +0.2 1.1 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS02825 +0.2 1.7 mechanosensitive ion channel family protein compare
MMP_RS01855 +0.2 1.5 2-hydroxyacyl-CoA dehydratase family protein compare
MMP_RS09065 +0.2 1.9 hypothetical protein compare
MMP_RS05680 +0.2 1.6 phosphate signaling complex protein PhoU compare
MMP_RS04100 +0.2 0.7 hypothetical protein compare
MMP_RS00145 +0.2 1.6 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS08835 +0.2 1.4 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS02475 +0.2 0.7 hypothetical protein compare
MMP_RS08930 +0.2 0.5 hypothetical protein compare
MMP_RS02770 +0.2 1.5 hypothetical protein compare
MMP_RS04195 +0.2 1.1 flavodoxin compare
MMP_RS02690 +0.2 1.3 FmdE family protein compare
MMP_RS00385 +0.2 1.2 P-II family nitrogen regulator compare
MMP_RS05490 +0.2 0.9 IMPACT family protein compare
MMP_RS00940 +0.2 1.6 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS08845 +0.2 1.7 archaellum operon transcriptional activator EarA family protein compare
MMP_RS06375 +0.2 0.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS08105 +0.2 1.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS04530 +0.2 1.5 ABC transporter permease compare
MMP_RS07805 +0.2 1.4 ABC transporter permease compare
MMP_RS06530 +0.2 1.0 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS07910 +0.2 1.4 NAD(P)H-hydrate dehydratase compare
MMP_RS05530 +0.2 1.4 signal peptide peptidase SppA compare
MMP_RS08610 +0.2 1.6 flagellar protein F compare
MMP_RS00530 +0.2 1.2 tRNA pseudouridine(54/55) synthase Pus10 compare
MMP_RS04030 +0.2 1.6 hypothetical protein compare
MMP_RS05505 +0.2 1.2 class IV adenylate cyclase compare
MMP_RS03910 +0.2 0.7 hypothetical protein compare
MMP_RS08285 +0.2 1.5 serine/threonine protein kinase compare
MMP_RS05830 +0.2 1.0 peptidyl-prolyl cis-trans isomerase compare
MMP_RS08625 +0.2 1.4 type II/IV secretion system ATPase subunit compare
MMP_RS05510 +0.2 1.1 Rrf2 family transcriptional regulator compare
MMP_RS02425 +0.2 1.1 hypothetical protein compare
MMP_RS07590 +0.2 1.3 hypothetical protein compare
MMP_RS02645 +0.2 1.3 ArsR family transcriptional regulator compare
MMP_RS02085 +0.2 1.1 inosine/xanthosine triphosphatase compare
MMP_RS02960 +0.2 1.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS05715 +0.2 1.2 hypothetical protein compare
MMP_RS05985 +0.2 0.5 hypothetical protein compare
MMP_RS02585 +0.2 1.5 methyl-accepting chemotaxis protein compare
MMP_RS00960 +0.2 0.9 iron export ABC transporter permease subunit FetB compare
MMP_RS00040 +0.2 1.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS07675 +0.2 1.6 S-layer protein compare
MMP_RS01450 +0.2 1.3 tRNA pseudouridine(38-40) synthase TruA compare
MMP_RS08415 +0.2 1.0 radical SAM protein compare
MMP_RS08390 +0.2 1.1 DUF5400 domain-containing protein compare
MMP_RS08945 +0.2 1.3 hypothetical protein compare
MMP_RS00035 +0.2 1.3 DUF2098 family protein compare
MMP_RS04000 +0.2 1.4 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS02850 +0.2 1.5 hypothetical protein compare
MMP_RS06735 +0.2 1.0 class I SAM-dependent rRNA methyltransferase compare
MMP_RS01320 +0.2 0.8 hypothetical protein compare
MMP_RS02540 +0.2 1.0 DUF2283 domain-containing protein compare
MMP_RS04490 +0.2 1.2 CBS domain-containing protein compare
MMP_RS01065 +0.2 1.4 alpha/beta hydrolase compare
MMP_RS05050 +0.2 1.4 substrate-binding domain-containing protein compare
MMP_RS08620 +0.2 0.8 flagellar accessory protein FlaH compare
MMP_RS04175 +0.2 1.4 permease compare
MMP_RS08640 +0.2 1.2 TIM barrel protein compare
MMP_RS02045 +0.2 0.5 tRNA-Met compare
MMP_RS03215 +0.2 1.1 MBL fold metallo-hydrolase compare
MMP_RS05795 +0.2 1.0 redox-regulated ATPase YchF compare
MMP_RS06150 +0.2 1.4 hypothetical protein compare
MMP_RS02685 +0.2 1.2 molybdate ABC transporter substrate-binding protein compare
MMP_RS05275 +0.2 1.3 AI-2E family transporter compare
MMP_RS02445 +0.2 1.4 putative DNA binding domain-containing protein compare
MMP_RS01105 +0.2 0.9 hypothetical protein compare
MMP_RS00770 +0.2 0.5 hypothetical protein compare
MMP_RS05080 +0.2 1.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS07155 +0.2 0.9 MFS transporter compare
MMP_RS07435 +0.2 0.4 GMP synthase subunit A compare
MMP_RS03800 +0.2 0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanolamine across organisms