Experiment set1IT071 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Ribose carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_03425 +4.8 37.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_03775 +4.0 30.2 pyruvate kinase compare
AO353_16615 +3.5 29.9 RNA polymerase sigma factor RpoS compare
AO353_10040 +3.3 26.1 transcriptional regulator compare
AO353_19020 +3.2 13.6 hypothetical protein compare
AO353_11850 +2.9 16.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_12315 +2.5 22.5 glucosyltransferase MdoH compare
AO353_14775 +2.5 18.6 hypothetical protein compare
AO353_12310 +2.5 21.3 glucan biosynthesis protein G compare
AO353_06365 +2.5 20.6 hypothetical protein compare
AO353_12105 +2.4 16.0 peptidase S41 compare
AO353_12940 +2.4 17.5 glycosyl transferase compare
AO353_19015 +2.3 20.7 hypothetical protein compare
AO353_12950 +2.2 17.1 polymerase compare
AO353_00300 +2.2 11.1 DNA helicase compare
AO353_12935 +2.1 9.0 glycosyltransferase compare
AO353_21625 +2.0 7.4 Fe/S biogenesis protein NfuA compare
AO353_19030 +1.9 13.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_00305 +1.9 10.1 ATP-binding protein compare
AO353_08880 +1.7 6.9 exopolyphosphatase compare
AO353_03430 +1.5 5.9 methylglyoxal synthase compare
AO353_12360 +1.5 11.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_24665 +1.5 11.3 phosphoglucomutase compare
AO353_12470 +1.5 13.2 peptidase compare
AO353_17635 +1.4 10.7 RNA polymerase subunit sigma compare
AO353_00875 +1.4 8.6 transcriptional regulator compare
AO353_16450 +1.4 10.9 protein-PII uridylyltransferase compare
AO353_17205 +1.3 3.6 beta-ketoadipyl CoA thiolase compare
AO353_08475 +1.3 8.6 phosphoserine phosphatase compare
AO353_09235 +1.2 9.1 phosphoglucomutase compare
AO353_02025 +1.2 9.6 mannose-1-phosphate guanyltransferase compare
AO353_05340 +1.2 5.7 histidine kinase compare
AO353_02005 +1.1 3.6 hypothetical protein compare
AO353_20660 +1.1 5.8 pseudouridine synthase compare
AO353_08965 +1.1 6.7 transcriptional regulator compare
AO353_14990 +1.1 3.9 hypothetical protein compare
AO353_11730 +1.1 9.2 glutamate--cysteine ligase compare
AO353_19040 +1.1 6.9 thioredoxin compare
AO353_06710 +1.1 2.3 riboflavin synthase subunit alpha compare
AO353_01995 +1.1 9.9 hypothetical protein compare
AO353_15285 +1.1 8.8 hypothetical protein compare
AO353_01990 +1.1 6.7 UDP-N-acetylglucosamine 2-epimerase compare
AO353_23805 +1.0 4.8 aldo/keto reductase compare
AO353_12305 +1.0 6.0 D-tyrosyl-tRNA(Tyr) deacylase compare
AO353_06530 +1.0 9.2 peptidase C13 compare
AO353_01985 +1.0 7.8 hypothetical protein compare
AO353_02010 +1.0 6.1 glycosyl transferase family 1 compare
AO353_03020 +1.0 6.6 arginine N-succinyltransferase compare
AO353_01970 +1.0 7.6 hypothetical protein compare
AO353_08895 +0.9 4.9 hypothetical protein compare
AO353_11945 +0.9 2.2 4-oxalocrotonate tautomerase compare
AO353_09250 +0.9 2.9 exodeoxyribonuclease III compare
AO353_17855 +0.9 2.9 ribonuclease D compare
AO353_03770 +0.9 2.9 hypothetical protein compare
AO353_25785 +0.9 3.6 adhesin compare
AO353_16040 +0.9 2.7 hypothetical protein compare
AO353_12930 +0.9 2.9 GlcNAc-PI de-N-acetylase compare
AO353_12045 +0.9 3.9 iron transporter compare
AO353_25585 +0.9 2.2 argininosuccinate lyase compare
AO353_08505 +0.9 6.7 FAD-linked oxidase compare
AO353_05935 +0.9 5.5 Kynureninase (EC 3.7.1.3) (from data) compare
AO353_03235 +0.8 6.2 glutamate-pyruvate aminotransferase compare
AO353_19750 +0.8 1.9 diaminopimelate epimerase compare
AO353_04340 +0.8 2.5 hypothetical protein compare
AO353_05240 +0.8 2.6 rod shape-determining protein MreD compare
AO353_25835 +0.8 4.0 6-phosphogluconate dehydrogenase compare
AO353_17620 +0.8 6.8 L-aspartate oxidase compare
AO353_03795 +0.8 3.7 fumarate hydratase compare
AO353_02135 +0.7 5.6 hypothetical protein compare
AO353_20840 +0.7 2.3 ribose pyranase compare
AO353_22305 +0.7 2.3 LysR family transcriptional regulator compare
AO353_03405 +0.7 5.1 histidine kinase compare
AO353_03525 +0.7 5.7 quinolinate synthase A compare
AO353_20185 +0.7 3.7 DNA-binding protein compare
AO353_24740 +0.7 2.6 hypothetical protein compare
AO353_25305 +0.7 3.4 malonate transporter compare
AO353_08485 +0.7 6.0 threonine dehydratase compare
AO353_03370 +0.7 3.6 aldose epimerase compare
AO353_02015 +0.7 4.8 acetyltransferase compare
AO353_16015 +0.7 5.0 tRNA (mo5U34)-methyltransferase compare
AO353_16530 +0.7 1.6 ribonuclease HII compare
AO353_15900 +0.7 2.2 GTP-binding protein compare
AO353_12110 +0.7 4.3 peptidase M23 compare
AO353_03290 +0.7 1.8 peptide deformylase compare
AO353_06585 +0.7 4.1 hypothetical protein compare
AO353_17540 +0.7 0.9 helicase compare
AO353_17200 +0.7 3.9 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data) compare
AO353_19025 +0.7 5.1 acetyltransferase compare
AO353_08065 +0.7 5.0 amino acid dehydrogenase compare
AO353_08110 +0.7 4.3 glutathione synthetase compare
AO353_00910 +0.7 3.8 ATP-dependent zinc protease compare
AO353_16800 +0.7 4.2 damage-inducible protein CinA compare
AO353_10085 +0.7 1.4 pyridoxamine kinase compare
AO353_16880 +0.7 5.7 potassium transporter Kup compare
AO353_26285 +0.7 1.2 hypothetical protein compare
AO353_00275 +0.7 4.5 hypothetical protein compare
AO353_26985 +0.7 2.6 hypothetical protein compare
AO353_02995 +0.7 4.5 succinylglutamate desuccinylase compare
AO353_23160 +0.6 3.1 hydrolase compare
AO353_05520 +0.6 4.0 nicotinate-nucleotide pyrophosphorylase compare
AO353_12590 +0.6 2.4 hypothetical protein compare
AO353_12665 +0.6 1.5 glycosyl transferase compare
AO353_04190 +0.6 1.4 glycerol-3-phosphate dehydrogenase compare
AO353_19035 +0.6 3.6 pilus assembly protein PilZ compare
AO353_09135 +0.6 1.7 cytochrome C compare
AO353_17520 +0.6 2.0 hypothetical protein compare
AO353_08535 +0.6 4.8 hypothetical protein compare
AO353_19095 +0.6 2.1 hypothetical protein compare
AO353_17195 +0.6 4.5 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) compare
AO353_22180 +0.6 2.7 2-oxobutyrate oxidase compare
AO353_29355 +0.6 2.1 hypothetical protein compare
AO353_27945 +0.6 2.9 acetyl-CoA acetyltransferase compare
AO353_08075 +0.6 4.5 hemolysin III compare
AO353_03415 +0.6 2.5 glucokinase compare
AO353_12580 +0.6 1.5 type II secretory protein PulK compare
AO353_16655 +0.6 1.8 phage baseplate protein compare
AO353_16050 +0.6 4.6 porin compare
AO353_11190 +0.6 4.8 ABC transporter compare
AO353_00125 +0.6 1.4 hypothetical protein compare
AO353_01020 +0.6 2.2 hypothetical protein compare
AO353_16195 +0.6 1.7 DNA mismatch repair protein MutT compare
AO353_10270 +0.6 4.1 glycosyl transferase compare
AO353_16980 +0.6 1.7 isochorismatase compare
AO353_11185 +0.6 5.1 channel protein TolC compare
AO353_09915 +0.6 4.1 long-chain acyl-CoA thioester hydrolase compare
AO353_22950 +0.6 2.6 universal stress protein UspA compare
AO353_27335 +0.6 1.9 hypothetical protein compare
AO353_28555 +0.6 1.7 LysR family transcriptional regulator compare
AO353_11195 +0.6 5.0 hemolysin secretion protein D compare
AO353_26115 +0.6 1.3 hypothetical protein compare
AO353_27710 +0.6 1.3 DNA repair protein compare
AO353_13160 +0.6 1.6 membrane protease HflC compare
AO353_10220 +0.6 4.5 acyltransferase compare
AO353_00295 +0.6 4.1 tRNA-dihydrouridine synthase A compare
AO353_13030 +0.6 3.5 cytoplasmic protein compare
AO353_08780 +0.6 3.5 5-formyltetrahydrofolate cyclo-ligase compare
AO353_13465 +0.6 3.4 hypothetical protein compare
AO353_10260 +0.6 4.6 sugar ABC transporter ATP-binding protein compare
AO353_00905 +0.6 2.5 GntR family transcriptional regulator compare
AO353_02630 +0.6 2.0 5,6-dimethylbenzimidazole synthase compare
AO353_06775 +0.6 3.7 dTDP-4-dehydrorhamnose reductase compare
AO353_10235 +0.6 4.5 glycosyltransferase compare
AO353_23410 +0.5 1.0 hypothetical protein compare
AO353_19045 +0.5 2.9 2-dehydropantoate 2-reductase compare
AO353_20200 +0.5 2.2 peptidylprolyl isomerase compare
AO353_24820 +0.5 3.0 histidine kinase compare
AO353_13670 +0.5 2.5 ribosomal protein L11 methyltransferase compare
AO353_29105 +0.5 2.5 hypothetical protein compare
AO353_22150 +0.5 1.2 iron transporter compare
AO353_07610 +0.5 0.8 hypothetical protein compare
AO353_16345 +0.5 1.4 energy transducer TonB compare
AO353_11180 +0.5 5.0 large adhesive protein compare
AO353_18560 +0.5 1.0 class I peptide chain release factor compare
AO353_02100 +0.5 2.3 phosphoglycolate phosphatase compare
AO353_21290 +0.5 1.4 hypothetical protein compare
AO353_03830 +0.5 1.9 antibiotic biosynthesis monooxygenase compare
AO353_13155 +0.5 2.1 hypothetical protein compare
AO353_17375 +0.5 4.7 beta-D-glucoside glucohydrolase compare
AO353_03140 +0.5 2.4 hypothetical protein compare
AO353_23920 +0.5 2.0 chemotaxis protein CheR compare
AO353_12570 +0.5 2.0 type II secretion system protein GspI compare
AO353_12145 +0.5 2.2 nitrogen regulation protein NR(I) compare
AO353_00170 +0.5 1.4 lysozyme compare
AO353_23400 +0.5 1.4 hypothetical protein compare
AO353_17785 +0.5 1.3 hypothetical protein compare
AO353_16020 +0.5 2.9 tRNA (cmo5U34)-methyltransferase compare
AO353_15885 +0.5 2.2 Cro/Cl family transcriptional regulator compare
AO353_15640 +0.5 1.6 acetylornithine aminotransferase compare
AO353_27660 +0.5 2.3 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_20495 +0.5 1.1 NUDIX hydrolase compare
AO353_10230 +0.5 4.0 glycosyltransferase compare
AO353_19905 +0.5 2.8 ABC transporter compare
AO353_00885 +0.5 1.7 3-methylitaconate isomerase compare
AO353_22280 +0.5 1.3 hypothetical protein compare
AO353_24535 +0.5 1.2 hypothetical protein compare
AO353_27380 +0.5 1.2 pyocin R2, holin compare
AO353_16075 +0.5 3.3 adhesin compare
AO353_01115 +0.5 3.0 inducer of phenazine A compare
AO353_23450 +0.5 1.4 LysR family transcriptional regulator compare
AO353_12730 +0.5 2.2 hypothetical protein compare
AO353_12460 +0.5 3.2 malate dehydrogenase compare
AO353_16355 +0.5 2.2 TetR family transcriptional regulator compare
AO353_20115 +0.5 2.0 LysR family transcriptional regulator compare
AO353_18500 +0.5 0.8 chemotaxis protein CheY compare
AO353_28935 +0.5 1.7 ATPase compare
AO353_08900 +0.5 4.0 hypothetical protein compare
AO353_08875 +0.5 1.3 amino acid ABC transporter ATP-binding protein compare
AO353_02720 +0.5 2.7 cysteine synthase compare
AO353_07235 +0.5 2.9 phosphoglycolate phosphatase compare
AO353_08960 +0.5 2.2 peptidylprolyl isomerase compare
AO353_13100 +0.5 0.6 GTPase RsgA compare
AO353_07910 +0.5 1.1 hypothetical protein compare
AO353_13575 +0.5 2.1 hypothetical protein compare
AO353_24440 +0.5 1.2 reactive intermediate/imine deaminase compare
AO353_17075 +0.4 2.0 short-chain dehydrogenase compare
AO353_25035 +0.4 1.3 integrase compare
AO353_03805 +0.4 1.7 C4-dicarboxylate ABC transporter compare
AO353_13800 +0.4 1.4 hypothetical protein compare
AO353_22680 +0.4 2.8 aldehyde dehydrogenase compare
AO353_07475 +0.4 2.5 sulfurase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Ribose in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Ribose across organisms