Experiment set1IT071 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 5 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS07005 -2.7 -1.3 4Fe-4S binding protein compare
MMP_RS06700 -2.0 -13.0 hypothetical protein compare
MMP_RS01225 -1.9 -5.4 DUF5379 domain-containing protein compare
MMP_RS06355 -1.9 -5.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS01175 -1.8 -5.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06895 -1.7 -2.9 selenocysteine-specific translation elongation factor compare
MMP_RS01265 -1.6 -4.6 hypothetical protein compare
MMP_RS01020 -1.6 -1.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03640 -1.6 -5.5 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07845 -1.6 -3.0 LL-diaminopimelate aminotransferase compare
MMP_RS05280 -1.6 -9.6 COG1361 S-layer family protein compare
MMP_RS01960 -1.6 -1.7 hypothetical protein compare
MMP_RS05285 -1.6 -11.7 MMPL family transporter compare
MMP_RS00515 -1.6 -1.9 DUF655 domain-containing protein compare
MMP_RS07635 -1.5 -7.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01985 -1.5 -7.2 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS01755 -1.5 -1.5 DUF2097 domain-containing protein compare
MMP_RS06295 -1.5 -6.6 methanogenesis marker 14 protein compare
MMP_RS02145 -1.5 -7.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS08435 -1.4 -3.9 Era-like GTP-binding protein compare
MMP_RS04890 -1.4 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07445 -1.3 -6.5 helix-turn-helix domain-containing protein compare
MMP_RS05290 -1.3 -7.5 TetR/AcrR family transcriptional regulator compare
MMP_RS03700 -1.3 -6.3 sodium:proton antiporter compare
MMP_RS01195 -1.3 -2.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS05430 -1.3 -4.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS07350 -1.3 -3.0 preprotein translocase subunit Sec61beta compare
MMP_RS05515 -1.2 -7.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS08745 -1.2 -6.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS08440 -1.2 -3.8 cell division protein SepF compare
MMP_RS06105 -1.2 -6.2 hydrogenase maturation peptidase HycI compare
MMP_RS07755 -1.2 -1.7 DUF555 domain-containing protein compare
MMP_RS05815 -1.2 -1.8 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS01500 -1.2 -3.3 CBS domain-containing protein compare
MMP_RS03025 -1.2 -4.9 molybdenum cofactor guanylyltransferase compare
MMP_RS07390 -1.1 -2.9 cell division protein FtsZ compare
MMP_RS03015 -1.1 -8.5 GTP 3' 8-cyclase MoaA compare
MMP_RS07525 -1.1 -6.2 4Fe-4S binding protein compare
MMP_RS01800 -1.1 -3.8 TIGR00303 family protein compare
MMP_RS06685 -1.1 -7.4 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06680 -1.1 -9.2 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS00695 -1.1 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02800 -1.1 -4.9 nucleotidyltransferase domain-containing protein compare
MMP_RS03305 -1.1 -6.3 winged helix-turn-helix domain-containing protein compare
MMP_RS02280 -1.1 -1.2 DUF211 domain-containing protein compare
MMP_RS01365 -1.1 -3.2 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS01610 -1.1 -3.5 hypothetical protein compare
MMP_RS01220 -1.1 -6.1 hypothetical protein compare
MMP_RS01380 -1.1 -4.0 PHP domain-containing protein compare
MMP_RS08790 -1.1 -2.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS03315 -1.1 -1.2 ferrous iron transport protein A compare
MMP_RS03435 -1.1 -1.7 ketol-acid reductoisomerase compare
MMP_RS03475 -1.1 -0.9 hypothetical protein compare
MMP_RS08320 -1.0 -4.2 molybdopterin molybdotransferase MoeA compare
MMP_RS08165 -1.0 -1.1 phosphoglycerate dehydrogenase compare
MMP_RS06705 -1.0 -3.8 formate/nitrite transporter family protein compare
MMP_RS00300 -1.0 -0.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06670 -1.0 -4.0 glucose-6-phosphate isomerase compare
MMP_RS06630 -1.0 -1.1 UPF0058 family protein compare
MMP_RS06345 -1.0 -6.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS02135 -1.0 -2.9 DUF5612 domain-containing protein compare
MMP_RS01925 -1.0 -7.0 DUF1616 domain-containing protein compare
MMP_RS06715 -1.0 -7.7 cache domain-containing protein compare
MMP_RS01005 -1.0 -1.5 riboflavin synthase compare
MMP_RS08210 -0.9 -2.4 phosphatidylglycerophosphatase A compare
MMP_RS05555 -0.9 -1.6 DUF4040 domain-containing protein compare
MMP_RS06285 -0.9 -2.9 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS00685 -0.9 -4.0 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06720 -0.9 -5.3 response regulator transcription factor compare
MMP_RS01900 -0.9 -7.3 hypothetical protein compare
MMP_RS00110 -0.9 -2.6 hypothetical protein compare
MMP_RS07710 -0.9 -5.2 cell division protein FtsZ compare
MMP_RS01955 -0.9 -1.6 hypothetical protein compare
MMP_RS07600 -0.9 -1.9 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01875 -0.9 -6.4 N-acetyltransferase compare
MMP_RS06400 -0.9 -1.8 4Fe-4S binding protein compare
MMP_RS08605 -0.9 -2.7 flagellar protein E compare
MMP_RS01905 -0.9 -6.8 glycosyltransferase compare
MMP_RS05250 -0.9 -1.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS06175 -0.8 -5.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS06625 -0.8 -1.7 DNA primase compare
MMP_RS07330 -0.8 -6.9 membrane protein compare
MMP_RS06350 -0.8 -4.2 HesA/MoeB/ThiF family protein compare
MMP_RS06130 -0.8 -3.5 peptidylprolyl isomerase compare
MMP_RS01890 -0.8 -3.3 nucleotide sugar dehydrogenase compare
MMP_RS07200 -0.8 -4.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07575 -0.8 -2.6 RNA ligase partner protein compare
MMP_RS04870 -0.8 -4.1 TIGR02253 family HAD-type hydrolase compare
MMP_RS03250 -0.8 -2.2 MJ1244 family protein compare
MMP_RS00985 -0.8 -4.0 CDC48 family AAA ATPase compare
MMP_RS06035 -0.8 -5.1 glycosyltransferase family 2 protein compare
MMP_RS02130 -0.8 -3.3 zinc metalloprotease HtpX compare
MMP_RS00620 -0.8 -4.7 4Fe-4S binding protein compare
MMP_RS01545 -0.8 -1.1 CBS domain-containing protein compare
MMP_RS07705 -0.8 -4.7 transcriptional regulator compare
MMP_RS05640 -0.8 -3.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01880 -0.7 -5.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01885 -0.7 -5.0 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS02885 -0.7 -6.3 molybdopterin biosynthesis protein compare
MMP_RS02165 -0.7 -4.4 tRNA-dihydrouridine synthase compare
MMP_RS00810 -0.7 -4.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03580 -0.7 -2.3 signal recognition particle-docking protein FtsY compare
MMP_RS04695 -0.7 -3.9 selenide water dikinase SelD compare
MMP_RS05345 -0.7 -3.5 hypothetical protein compare
MMP_RS02240 -0.7 -2.6 methanogenesis marker 7 protein compare
MMP_RS07625 -0.7 -1.7 cobalt ECF transporter T component CbiQ compare
MMP_RS08915 -0.7 -2.4 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS07075 -0.7 -3.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS05635 -0.7 -4.2 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS08460 -0.7 -1.7 proteasome-activating nucleotidase compare
MMP_RS06940 -0.7 -1.9 polyprenyl diphosphate synthase compare
MMP_RS05540 -0.7 -2.8 hypothetical protein compare
MMP_RS06020 -0.7 -2.5 archaeoflavoprotein AfpA compare
MMP_RS02195 -0.7 -2.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS04585 -0.7 -4.3 AIR synthase related protein compare
MMP_RS06730 -0.7 -1.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS09055 -0.7 -1.0 CAP domain-containing protein compare
MMP_RS00130 -0.6 -1.0 nickel-responsive transcriptional regulator NikR compare
MMP_RS02010 -0.6 -3.5 PHP domain-containing protein compare
MMP_RS07730 -0.6 -1.4 pyruvate synthase subunit beta compare
MMP_RS05765 -0.6 -3.4 M42 family metallopeptidase compare
MMP_RS02805 -0.6 -1.2 HEPN domain-containing protein compare
MMP_RS06315 -0.6 -0.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS03445 -0.6 -1.0 methanogenesis marker 17 protein compare
MMP_RS02875 -0.6 -3.6 chorismate pyruvate-lyase family protein compare
MMP_RS07385 -0.6 -1.6 protein translocase SEC61 complex subunit gamma compare
MMP_RS02235 -0.6 -3.6 CBS domain-containing protein compare
MMP_RS08300 -0.6 -0.9 metal-sulfur cluster assembly factor compare
MMP_RS01795 -0.6 -1.3 methanogenesis marker 6 protein compare
MMP_RS03155 -0.6 -3.9 precorrin-6A reductase compare
MMP_RS00915 -0.6 -3.9 DUF116 domain-containing protein compare
MMP_RS04875 -0.6 -2.5 energy-converting hydrogenase B subunit P compare
MMP_RS00335 -0.6 -2.1 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS08370 -0.6 -0.5 cation:proton antiporter subunit C compare
MMP_RS03600 -0.6 -1.1 triose-phosphate isomerase compare
MMP_RS01830 -0.6 -1.0 tRNA-Val compare
MMP_RS03385 -0.6 -0.9 cation diffusion facilitator family transporter compare
MMP_RS01745 -0.6 -3.9 AMP phosphorylase compare
MMP_RS08330 -0.6 -2.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS01325 -0.5 -1.0 dihydroneopterin aldolase family protein compare
MMP_RS07685 -0.5 -2.6 TIGR01212 family radical SAM protein compare
MMP_RS03145 -0.5 -2.6 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS01085 -0.5 -1.4 hypothetical protein compare
MMP_RS06980 -0.5 -2.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01725 -0.5 -1.7 class I SAM-dependent methyltransferase family protein compare
MMP_RS08785 -0.5 -0.8 RNA-protein complex protein Nop10 compare
MMP_RS00125 -0.5 -1.1 DUF2798 domain-containing protein compare
MMP_RS07545 -0.5 -1.0 HTH domain-containing protein compare
MMP_RS05850 -0.5 -2.0 Ldh family oxidoreductase compare
MMP_RS08595 -0.5 -0.8 flagellar protein C compare
MMP_RS06270 -0.5 -1.9 TIGR00300 family protein compare
MMP_RS05550 -0.5 -0.5 cation:proton antiporter compare
MMP_RS04955 -0.5 -2.6 DNA topoisomerase I compare
MMP_RS04090 -0.5 -1.3 hypothetical protein compare
MMP_RS05925 -0.5 -2.2 small nuclear ribonucleoprotein compare
MMP_RS05580 -0.5 -4.1 glycosyltransferase compare
MMP_RS04775 -0.5 -1.6 adenosylhomocysteinase compare
MMP_RS07425 -0.5 -2.8 GTP-binding protein compare
MMP_RS07860 -0.5 -0.6 hypothetical protein compare
MMP_RS03080 -0.5 -1.7 universal stress protein compare
MMP_RS00320 -0.5 -1.0 class I SAM-dependent methyltransferase compare
MMP_RS02355 -0.5 -1.2 30S ribosomal protein S27ae compare
MMP_RS03110 -0.5 -2.3 glycosyltransferase family 2 protein compare
MMP_RS05920 -0.5 -0.4 50S ribosomal protein L37e compare
MMP_RS07090 -0.5 -3.3 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06310 -0.5 -2.3 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS06515 -0.5 -1.3 UPF0489 family protein compare
MMP_RS04710 -0.5 -1.0 hypothetical protein compare
MMP_RS03125 -0.5 -2.1 cell division ATPase MinD compare
MMP_RS01915 -0.4 -3.7 DUF354 domain-containing protein compare
MMP_RS04685 -0.4 -0.9 DUF126 domain-containing protein compare
MMP_RS01895 -0.4 -3.6 flippase compare
MMP_RS03300 -0.4 -0.5 TOBE domain-containing protein compare
MMP_RS06990 -0.4 -2.0 CatB-related O-acetyltransferase compare
MMP_RS07420 -0.4 -1.9 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06120 -0.4 -1.2 UPF0147 family protein compare
MMP_RS01445 -0.4 -2.4 hypothetical protein compare
MMP_RS05315 -0.4 -0.7 hypothetical protein compare
MMP_RS06770 -0.4 -2.8 DHH family phosphoesterase compare
MMP_RS07190 -0.4 -2.9 chromosome segregation protein SMC compare
MMP_RS03390 -0.4 -2.1 malate dehydrogenase compare
MMP_RS07365 -0.4 -2.9 2-phosphoglycerate kinase compare
MMP_RS07885 -0.4 -1.5 tripartite tricarboxylate transporter permease compare
MMP_RS06765 -0.4 -1.8 flap endonuclease-1 compare
MMP_RS08195 -0.4 -2.4 hypothetical protein compare
MMP_RS06215 -0.4 -1.3 30S ribosomal protein S6e compare
MMP_RS01180 -0.4 -0.4 XTP/dITP diphosphatase compare
MMP_RS05020 -0.4 -1.7 hypothetical protein compare
MMP_RS00570 -0.4 -1.7 protein-L-isoaspartate O-methyltransferase compare
MMP_RS07415 -0.4 -2.1 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS06230 -0.4 -0.9 helix-turn-helix domain-containing protein compare
MMP_RS08635 -0.4 -0.7 UbiA family prenyltransferase compare
MMP_RS08840 -0.4 -2.7 class I SAM-dependent methyltransferase compare
MMP_RS08725 -0.4 -0.7 Ni/Fe hydrogenase subunit alpha compare
MMP_RS08280 -0.4 -1.4 proteasome assembly chaperone family protein compare
MMP_RS08070 -0.4 -2.0 DUF2096 domain-containing protein compare
MMP_RS07380 -0.4 -0.9 transcription elongation factor Spt5 compare
MMP_RS06925 -0.4 -0.9 ribonuclease VapC4 compare
MMP_RS08650 -0.4 -1.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08645 -0.4 -1.9 UPF0179 family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanolamine across organisms