Experiment set1IT069 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
AO353_24130 -5.8 -4.0 hypothetical protein compare
AO353_13070 -5.0 -4.9 phosphoserine phosphatase compare
AO353_20695 -4.8 -5.7 O-succinylhomoserine sulfhydrylase compare
AO353_13165 -4.6 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20635 -4.5 -11.7 3-isopropylmalate dehydrogenase compare
AO353_05115 -4.5 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12070 -4.4 -8.4 imidazoleglycerol-phosphate dehydratase compare
AO353_12090 -4.4 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20665 -4.4 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20620 -4.4 -8.3 isopropylmalate isomerase compare
AO353_07230 -4.3 -16.4 anthranilate synthase compare
AO353_02075 -4.3 -9.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12085 -4.2 -7.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_05485 -4.2 -9.1 Fructose-specific PTS system, I, HPr, and IIA components (from data) conserved
AO353_07210 -4.1 -6.3 indole-3-glycerol-phosphate synthase compare
AO353_20540 -4.1 -8.4 aromatic amino acid aminotransferase compare
AO353_09240 -4.1 -2.8 acetylglutamate kinase compare
AO353_14505 -4.1 -13.3 ketol-acid reductoisomerase compare
AO353_08185 -4.1 -11.4 methionine biosynthesis protein MetW compare
AO353_12520 -4.0 -12.7 glutamate synthase compare
AO353_08180 -4.0 -14.1 homoserine O-acetyltransferase compare
AO353_08345 -4.0 -9.7 dihydroxy-acid dehydratase compare
AO353_12515 -4.0 -22.5 glutamate synthase compare
AO353_14990 -3.9 -3.8 hypothetical protein compare
AO353_12075 -3.9 -8.7 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20625 -3.9 -5.3 3-isopropylmalate dehydratase compare
AO353_02070 -3.9 -7.8 prephenate dehydratase compare
AO353_04155 -3.9 -12.3 ornithine carbamoyltransferase compare
AO353_12365 -3.8 -5.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_14495 -3.8 -11.9 acetolactate synthase 3 catalytic subunit compare
AO353_09000 -3.7 -6.2 argininosuccinate lyase compare
AO353_08685 -3.6 -10.5 N-acetylglutamate synthase compare
AO353_10710 -3.6 -6.0 tryptophan synthase subunit beta compare
AO353_04105 -3.6 -9.2 argininosuccinate synthase compare
AO353_00310 -3.5 -11.8 transaldolase compare
AO353_05110 -3.5 -12.7 histidinol dehydrogenase compare
AO353_12500 -3.5 -2.4 shikimate kinase compare
AO353_05475 -3.5 -16.0 PTS fructose transporter subunit IIBC conserved
AO353_20175 -3.5 -4.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_10670 -3.4 -9.6 shikimate dehydrogenase compare
AO353_10025 -3.4 -16.7 pyruvate carboxylase subunit B compare
AO353_07220 -3.4 -9.5 anthranilate synthase compare
AO353_07215 -3.4 -9.5 anthranilate phosphoribosyltransferase compare
AO353_22800 -3.3 -4.7 sulfite reductase compare
AO353_12115 -3.3 -4.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_11850 -3.3 -6.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_10035 -3.3 -10.6 LysR family transcriptional regulator compare
AO353_10030 -3.2 -12.6 pyruvate carboxylase subunit A compare
AO353_08475 -3.1 -10.8 phosphoserine phosphatase compare
AO353_14500 -3.1 -8.7 acetolactate synthase 3 regulatory subunit compare
AO353_08015 -3.0 -8.7 5,10-methylenetetrahydrofolate reductase compare
AO353_06495 -3.0 -6.7 gamma-glutamyl phosphate reductase compare
AO353_14370 -3.0 -8.4 glucose-6-phosphate isomerase compare
AO353_07155 -3.0 -9.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_15925 -2.9 -11.7 2-isopropylmalate synthase compare
AO353_12360 -2.8 -10.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_19060 -2.6 -6.3 CysB family transcriptional regulator compare
AO353_03360 -2.6 -9.8 glucose-6-phosphate dehydrogenase compare
AO353_10455 -2.5 -2.9 tRNA modification GTPase MnmE compare
AO353_02685 -2.3 -4.4 phosphoribosylglycinamide formyltransferase compare
AO353_00825 -2.3 -4.8 porin compare
AO353_08165 -2.3 -3.8 pyrroline-5-carboxylate reductase compare
AO353_08780 -2.3 -8.7 5-formyltetrahydrofolate cyclo-ligase compare
AO353_14115 -2.3 -7.4 gamma-glutamyl kinase compare
AO353_08510 -2.2 -5.3 3-phosphoglycerate dehydrogenase compare
AO353_03590 -2.1 -4.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_13140 -2.1 -6.8 tRNA dimethylallyltransferase compare
AO353_06045 -2.1 -8.6 exodeoxyribonuclease V subunit beta compare
AO353_03420 -2.1 -5.9 phosphogluconate dehydratase compare
AO353_10445 -2.1 -2.8 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_03585 -2.0 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_10705 -2.0 -4.1 tryptophan synthase subunit alpha compare
AO353_06050 -2.0 -7.6 exodeoxyribonuclease V subunit gamma compare
AO353_07315 -1.9 -2.9 rRNA methyltransferase compare
AO353_14400 -1.9 -5.0 Fis family transcriptional regulator compare
AO353_09040 -1.9 -2.5 diaminopimelate epimerase compare
AO353_03425 -1.9 -9.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_13200 -1.8 -10.9 exoribonuclease R compare
AO353_27500 -1.8 -3.1 hypothetical protein compare
AO353_04355 -1.8 -2.9 homoserine dehydrogenase compare
AO353_13640 -1.8 -4.7 histidine kinase compare
AO353_16440 -1.7 -3.3 ArsC family transcriptional regulator compare
AO353_07075 -1.7 -5.5 elongation factor Tu compare
AO353_06040 -1.7 -3.8 exodeoxyribonuclease V subunit alpha compare
AO353_11165 -1.7 -9.1 hypothetical protein compare
AO353_03580 -1.7 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_16940 -1.7 -6.0 deoxycytidine triphosphate deaminase compare
AO353_15295 -1.6 -6.1 division/cell wall cluster transcriptional repressor MraZ compare
AO353_08265 -1.6 -6.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_01550 -1.6 -4.9 hypothetical protein compare
AO353_02250 -1.6 -2.6 chorismate synthase compare
AO353_04565 -1.6 -6.0 nucleoid-associated protein compare
AO353_03615 -1.6 -3.9 cold-shock protein compare
AO353_03775 -1.6 -7.4 pyruvate kinase compare
AO353_14420 -1.5 -3.9 molecular chaperone DnaK compare
AO353_15830 -1.5 -3.3 transcriptional regulator compare
AO353_03715 -1.4 -2.8 H-NS histone compare
AO353_21400 -1.4 -2.4 conjugal transfer protein TraR compare
AO353_16805 -1.4 -5.8 recombinase RecA compare
AO353_01410 -1.4 -3.1 ribonuclease E compare
AO353_04175 -1.4 -4.5 glycerol uptake facilitator GlpF compare
AO353_10780 -1.3 -1.4 DNA-binding protein compare
AO353_19030 -1.3 -6.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_26090 -1.3 -2.7 hypothetical protein compare
AO353_14595 -1.3 -6.5 carbonate dehydratase compare
AO353_03020 -1.3 -5.6 arginine N-succinyltransferase compare
AO353_18780 -1.3 -5.9 cobyrinic acid a,c-diamide synthase compare
AO353_03710 -1.2 -3.0 formyltetrahydrofolate deformylase compare
AO353_02005 -1.2 -1.6 hypothetical protein compare
AO353_14395 -1.2 -3.8 poly(A) polymerase compare
AO353_26550 -1.2 -1.7 hypothetical protein compare
AO353_18540 -1.2 -2.6 pseudouridine synthase compare
AO353_08885 -1.1 -8.8 polyphosphate kinase compare
AO353_01080 -1.1 -6.6 hypothetical protein compare
AO353_22195 -1.1 -1.4 metal ABC transporter permease compare
AO353_10040 -1.1 -6.2 transcriptional regulator compare
AO353_06850 -1.1 -3.1 MFS transporter compare
AO353_01685 -1.1 -2.1 hypothetical protein compare
AO353_07325 -1.1 -1.8 diadenosine tetraphosphatase compare
AO353_15725 -1.1 -2.6 hypothetical protein compare
AO353_12710 -1.0 -1.8 thioredoxin compare
AO353_08045 -1.0 -7.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_09050 -1.0 -3.3 recombinase XerC compare
AO353_16450 -1.0 -7.2 protein-PII uridylyltransferase compare
AO353_24260 -1.0 -1.0 hypothetical protein compare
AO353_17750 -1.0 -2.6 transcriptional regulator compare
AO353_07520 -1.0 -7.0 8-amino-7-oxononanoate synthase compare
AO353_09890 -1.0 -3.9 phosphate ABC transporter ATP-binding protein compare
AO353_05080 -1.0 -6.4 sulfate adenylyltransferase compare
AO353_09915 -1.0 -4.1 long-chain acyl-CoA thioester hydrolase compare
AO353_23285 -0.9 -2.5 hypothetical protein compare
AO353_15640 -0.9 -2.8 acetylornithine aminotransferase compare
AO353_02810 -0.9 -5.2 histidine kinase compare
AO353_16710 -0.9 -2.2 hypothetical protein compare
AO353_27155 -0.9 -2.0 hypothetical protein compare
AO353_13225 -0.9 -2.6 50S ribosomal protein L9 compare
AO353_14220 -0.9 -1.5 ribosomal large subunit pseudouridine synthase D compare
AO353_13245 -0.9 -5.2 hypothetical protein compare
AO353_08485 -0.9 -6.8 threonine dehydratase compare
AO353_28425 -0.9 -2.8 TetR family transcriptional regulator compare
AO353_15000 -0.9 -2.8 glycerate dehydrogenase compare
AO353_13150 -0.9 -5.1 GTPase HflX compare
AO353_00750 -0.9 -2.9 GntR family transcriptional regulator compare
AO353_15445 -0.9 -2.2 disulfide bond formation protein B compare
AO353_02975 -0.9 -2.4 aspartate kinase compare
AO353_05075 -0.9 -4.7 adenylylsulfate kinase compare
AO353_11730 -0.9 -5.6 glutamate--cysteine ligase compare
AO353_04220 -0.9 -3.1 chemotaxis protein CheY compare
AO353_20095 -0.9 -3.3 histidine kinase compare
AO353_19360 -0.9 -2.1 peroxiredoxin compare
AO353_12080 -0.9 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_23495 -0.9 -2.2 SAM-dependent methyltransferase compare
AO353_11775 -0.9 -4.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_00875 -0.8 -3.8 transcriptional regulator compare
AO353_27720 -0.8 -3.6 cupin compare
AO353_10440 -0.8 -3.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_20860 -0.8 -1.9 hypothetical protein compare
AO353_21455 -0.8 -1.2 cation:proton antiporter compare
AO353_12015 -0.8 -1.8 antitoxin compare
AO353_24915 -0.8 -1.6 hypothetical protein compare
AO353_03015 -0.8 -2.7 arginine N-succinyltransferase compare
AO353_03250 -0.8 -1.3 gluconokinase compare
AO353_08505 -0.8 -5.1 FAD-linked oxidase compare
AO353_07525 -0.8 -6.2 biotin synthase compare
AO353_20300 -0.8 -5.0 anti-sigma factor compare
AO353_20800 -0.8 -1.4 hypothetical protein compare
AO353_16195 -0.8 -1.6 DNA mismatch repair protein MutT compare
AO353_16495 -0.8 -3.6 zinc metallopeptidase RseP compare
AO353_24275 -0.8 -1.7 transcriptional regulator compare
AO353_10730 -0.8 -1.4 hypothetical protein compare
AO353_18560 -0.8 -1.4 class I peptide chain release factor compare
AO353_24550 -0.8 -2.4 hypothetical protein compare
AO353_21410 -0.8 -1.9 hypothetical protein compare
AO353_09885 -0.8 -1.9 transcriptional regulator PhoU compare
AO353_09660 -0.8 -1.2 hypothetical protein compare
AO353_16605 -0.7 -5.5 protein-L-isoaspartate O-methyltransferase compare
AO353_20000 -0.7 -2.6 phosphoribosyltransferase compare
AO353_19565 -0.7 -2.0 vanillate O-demethylase oxidoreductase VanB compare
AO353_01315 -0.7 -3.5 TetR family transcriptional regulator compare
AO353_25640 -0.7 -1.9 AsnC family transcriptional regulator compare
AO353_10985 -0.7 -1.9 hypothetical protein compare
AO353_05690 -0.7 -2.3 SsrA-binding protein compare
AO353_14585 -0.7 -3.0 ribosomal-protein-alanine acetyltransferase compare
AO353_11770 -0.7 -1.4 molecular chaperone Hsp33 compare
AO353_17475 -0.7 -2.9 hypothetical protein compare
AO353_04365 -0.7 -2.6 recombinase XerD compare
AO353_27665 -0.7 -4.4 arginyl-tRNA-protein transferase compare
AO353_24255 -0.7 -2.3 hypothetical protein compare
AO353_07645 -0.7 -0.7 sarcosine oxidase subunit gamma compare
AO353_28380 -0.7 -2.1 GntR family transcriptional regulator compare
AO353_08100 -0.7 -1.8 chemotaxis protein CheY compare
AO353_07510 -0.7 -4.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_02300 -0.7 -1.7 MarR family transcriptional regulator compare
AO353_07610 -0.7 -1.2 hypothetical protein compare
AO353_05800 -0.7 -2.5 hypothetical protein compare
AO353_19300 -0.7 -2.7 exonuclease compare
AO353_10950 -0.7 -4.5 thiol:disulfide interchange protein compare
AO353_27650 -0.7 -2.6 cell division protein FtsK compare
AO353_25405 -0.7 -2.2 molybdenum cofactor biosynthesis protein B compare
AO353_18005 -0.7 -3.0 allophanate hydrolase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Fructose in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Fructose across organisms