Experiment set1IT069 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; ShewMM media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -5.9 -5.8 3-isopropylmalate dehydratase small subunit compare
EX31_RS12510 -5.7 -17.9 FAD-dependent oxidoreductase compare
EX31_RS13275 -5.6 -12.0 diaminopimelate decarboxylase compare
EX31_RS14180 -5.6 -14.4 argininosuccinate lyase compare
EX31_RS12400 -5.6 -5.4 RNA polymerase factor sigma-54 compare
EX31_RS13445 -5.5 -12.9 argininosuccinate synthase compare
EX31_RS12515 -5.5 -25.9 glutamate synthase large subunit compare
EX31_RS03685 -5.5 -11.8 3-isopropylmalate dehydrogenase compare
EX31_RS14500 -5.4 -12.2 orotate phosphoribosyltransferase compare
EX31_RS22625 -5.4 -3.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS14190 -5.4 -14.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS05785 -5.4 -3.7 superoxide dismutase [Mn] compare
EX31_RS04035 -5.3 -12.9 phosphoserine phosphatase compare
EX31_RS14215 -5.3 -21.5 cystathionine gamma-synthase compare
EX31_RS03830 -5.3 -15.7 carbamoyl-phosphate synthase large subunit compare
EX31_RS03935 -5.3 -10.1 threonine synthase compare
EX31_RS15005 -5.3 -18.6 dihydroxy-acid dehydratase compare
EX31_RS14185 -5.3 -8.8 acetylglutamate kinase compare
EX31_RS15020 -5.2 -20.7 ketol-acid reductoisomerase compare
EX31_RS02530 -5.2 -5.1 ABC transporter ATP-binding protein compare
EX31_RS22695 -5.2 -8.0 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS02690 -5.1 -5.0 pyrroline-5-carboxylate reductase compare
EX31_RS02520 -5.1 -3.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS12785 -5.1 -13.5 aspartate carbamoyltransferase compare
EX31_RS14200 -5.0 -18.7 phosphoenolpyruvate carboxylase compare
EX31_RS20975 -5.0 -6.8 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS20980 -4.9 -7.5 glutamate 5-kinase compare
EX31_RS03690 -4.9 -11.9 3-isopropylmalate dehydratase large subunit compare
EX31_RS18530 -4.9 -12.7 leucine-responsive transcriptional regulator Lrp compare
EX31_RS03835 -4.9 -8.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS23245 -4.8 -17.4 asparagine synthase B compare
EX31_RS03945 -4.8 -24.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS02515 -4.8 -3.3 PAS domain-containing protein compare
EX31_RS09965 -4.7 -3.3 anthranilate phosphoribosyltransferase compare
EX31_RS13160 -4.7 -13.6 amino-acid N-acetyltransferase compare
EX31_RS16855 -4.7 -16.5 phosphoribosylamine--glycine ligase compare
EX31_RS16860 -4.7 -22.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS15880 -4.6 -10.8 nitrogen regulation protein NR(I) compare
EX31_RS11735 -4.6 -10.7 homoserine O-succinyltransferase compare
EX31_RS19570 -4.6 -12.6 amidophosphoribosyltransferase compare
EX31_RS21470 -4.6 -9.8 phosphoglycerate dehydrogenase compare
EX31_RS20175 -4.6 -10.2 cysteine synthase A compare
EX31_RS23415 -4.6 -7.0 citrate synthase compare
EX31_RS14205 -4.5 -15.1 methylenetetrahydrofolate reductase compare
EX31_RS03940 -4.5 -13.3 homoserine kinase compare
EX31_RS09970 -4.4 -6.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS07870 -4.4 -11.1 adenylyl-sulfate kinase compare
EX31_RS11455 -4.4 -4.2 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS20495 -4.4 -11.6 outer membrane protein assembly factor BamB compare
EX31_RS07895 -4.3 -12.1 phosphoadenylyl-sulfate reductase compare
EX31_RS20450 -4.3 -5.1 IMP dehydrogenase compare
EX31_RS18095 -4.3 -4.2 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS11445 -4.3 -5.9 histidinol-phosphate transaminase compare
EX31_RS21895 -4.3 -19.7 phosphoribosylformylglycinamidine synthase compare
EX31_RS24385 -4.2 -2.9 dihydroorotase compare
EX31_RS11440 -4.2 -6.4 histidinol dehydrogenase compare
EX31_RS09975 -4.1 -6.8 tryptophan synthase subunit beta compare
EX31_RS22750 -4.0 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS09960 -4.0 -3.9 glutamine amidotransferase compare
EX31_RS11450 -4.0 -4.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS09980 -3.9 -6.4 tryptophan synthase subunit alpha compare
EX31_RS03680 -3.9 -14.7 2-isopropylmalate synthase compare
EX31_RS11465 -3.8 -6.8 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS07955 -3.8 -21.7 GTP diphosphokinase compare
EX31_RS07585 -3.8 -11.4 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS14310 -3.7 -5.1 6-phosphofructokinase compare
EX31_RS12825 -3.7 -9.2 ornithine carbamoyltransferase compare
EX31_RS18540 -3.6 -3.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS09955 -3.6 -7.2 anthranilate synthase component 1 compare
EX31_RS15870 -3.6 -3.5 glutamate--ammonia ligase compare
EX31_RS22245 -3.5 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS18525 -3.5 -3.4 DNA translocase FtsK compare
EX31_RS18255 -3.4 -2.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS23440 -3.4 -2.3 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS22250 -3.4 -6.1 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS07590 -3.4 -2.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS07900 -3.3 -17.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS22620 -3.3 -7.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS08720 -3.3 -15.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS11470 -3.3 -3.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS14340 -3.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS06055 -3.2 -4.4 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS09855 -3.2 -5.2 orotidine-5'-phosphate decarboxylase compare
EX31_RS09890 -3.1 -11.9 HTH-type transcriptional regulator CysB compare
EX31_RS15875 -3.0 -13.1 nitrogen regulation protein NR(II) compare
EX31_RS04390 -2.9 -4.3 DNA polymerase III subunit chi compare
EX31_RS07905 -2.9 -15.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS03250 -2.9 -9.8 RNA polymerase-binding protein DksA compare
EX31_RS06225 -2.9 -1.9 hypothetical protein compare
EX31_RS25370 -2.8 -10.9 HTH-type transcriptional regulator MetR compare
EX31_RS04630 -2.8 -14.7 aspartate aminotransferase family protein compare
EX31_RS11460 -2.7 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS07880 -2.6 -16.5 sulfate adenylyltransferase subunit CysD compare
EX31_RS14335 -2.6 -2.5 serine O-acetyltransferase compare
EX31_RS07875 -2.6 -16.4 sulfate adenylyltransferase subunit CysN compare
EX31_RS03480 -2.6 -2.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS25365 -2.4 -2.3 50S ribosomal protein L31 compare
EX31_RS04105 -2.4 -2.8 helix-turn-helix domain-containing protein compare
EX31_RS20735 -2.2 -5.2 exodeoxyribonuclease V subunit beta compare
EX31_RS03775 -2.2 -4.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS07560 -2.1 -15.5 ATP-dependent chaperone ClpB compare
EX31_RS11675 -2.1 -2.8 Holliday junction branch migration protein RuvA compare
EX31_RS21190 -2.1 -4.1 ribonuclease HI compare
EX31_RS06150 -2.1 -13.6 transcriptional regulator AsnC compare
EX31_RS06060 -2.1 -4.6 phosphate ABC transporter permease PstA compare
EX31_RS23125 -2.0 -3.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS09290 -2.0 -2.4 hypothetical protein compare
EX31_RS15555 -2.0 -3.6 amino acid ABC transporter ATP-binding protein compare
EX31_RS15010 -1.9 -8.4 threonine ammonia-lyase, biosynthetic compare
EX31_RS15655 -1.9 -1.3 hypothetical protein compare
EX31_RS07595 -1.8 -6.7 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS22145 -1.8 -1.8 phosphatidylglycerophosphatase A compare
EX31_RS12875 -1.8 -3.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS06065 -1.8 -8.1 phosphate ABC transporter permease PstC compare
EX31_RS10030 -1.8 -2.4 YciY family protein compare
EX31_RS04725 -1.8 -4.3 shikimate kinase AroK compare
EX31_RS06405 -1.8 -2.8 SDR family oxidoreductase compare
EX31_RS11815 -1.7 -9.0 glucose-6-phosphate isomerase compare
EX31_RS10490 -1.7 -2.0 putative selenium delivery protein YdfZ compare
EX31_RS04925 -1.7 -3.0 Fe-S biogenesis protein NfuA compare
EX31_RS25300 -1.7 -1.3 YqaE/Pmp3 family membrane protein compare
EX31_RS06070 -1.6 -7.7 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS19610 -1.6 -6.6 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS02180 -1.5 -2.0 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS15155 -1.5 -2.7 diaminopimelate epimerase compare
EX31_RS21300 -1.5 -1.9 acyl carrier protein compare
EX31_RS22740 -1.5 -7.2 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS06000 -1.5 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS01615 -1.5 -2.3 DNA breaking-rejoining protein compare
EX31_RS08130 -1.5 -2.0 accessory factor UbiK family protein compare
EX31_RS10325 -1.5 -2.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS11435 -1.5 -5.2 ATP phosphoribosyltransferase compare
EX31_RS03890 -1.5 -4.1 Na+/H+ antiporter NhaA compare
EX31_RS03400 -1.4 -4.9 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS15540 -1.4 -1.6 SDR family oxidoreductase compare
EX31_RS22430 -1.4 -1.5 hemolysin expression modulator Hha compare
EX31_RS22690 -1.4 -7.0 phosphoribosylglycinamide formyltransferase compare
EX31_RS15000 -1.4 -8.3 branched-chain amino acid transaminase compare
EX31_RS10025 -1.3 -2.6 hypothetical protein compare
EX31_RS21400 -1.3 -4.5 transketolase compare
EX31_RS05145 -1.3 -7.0 inorganic phosphate transporter PitA compare
EX31_RS08745 -1.3 -1.5 50S ribosomal protein L9 compare
EX31_RS09895 -1.3 -1.7 type I DNA topoisomerase compare
EX31_RS10115 -1.3 -6.8 formyltetrahydrofolate deformylase compare
EX31_RS19600 -1.3 -5.7 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS25290 -1.3 -1.9 hypothetical protein compare
EX31_RS16845 -1.3 -2.8 DNA-binding protein HU-alpha compare
EX31_RS13740 -1.3 -1.6 glutathione transferase GstA compare
EX31_RS17465 -1.3 -2.3 hypothetical protein compare
EX31_RS05855 -1.3 -2.0 glycine--tRNA ligase subunit beta compare
EX31_RS02525 -1.3 -5.0 ABC transporter permease compare
EX31_RS25295 -1.3 -1.8 GhoT/OrtT family toxin compare
EX31_RS24220 -1.3 -1.8 hypothetical protein compare
EX31_RS13045 -1.2 -7.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS25340 -1.2 -4.3 hypothetical protein compare
EX31_RS19655 -1.2 -4.4 beta-ketoacyl-ACP synthase I compare
EX31_RS09170 -1.2 -1.8 ABC transporter ATP-binding protein compare
EX31_RS15015 -1.2 -2.7 HTH-type transcriptional activator IlvY compare
EX31_RS04710 -1.1 -2.7 adenine-specific DNA-methyltransferase compare
EX31_RS07885 -1.1 -6.2 uroporphyrinogen-III C-methyltransferase compare
EX31_RS19480 -1.1 -4.8 acetate kinase compare
EX31_RS01590 -1.1 -1.9 phage tail assembly protein T compare
EX31_RS00600 -1.1 -1.9 DUF1471 domain-containing protein compare
EX31_RS11355 -1.1 -2.6 chemotaxis protein CheY compare
EX31_RS03790 -1.0 -2.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS24660 -1.0 -2.5 MBL fold metallo-hydrolase compare
EX31_RS17275 -1.0 -2.1 DUF72 domain-containing protein compare
EX31_RS06955 -1.0 -1.9 hypothetical protein compare
EX31_RS07800 -1.0 -4.5 recombinase RecA compare
EX31_RS25125 -1.0 -2.0 thr operon leader peptide compare
EX31_RS01445 -1.0 -2.0 J domain-containing protein compare
EX31_RS03955 -1.0 -4.8 two-component system response regulator ArcA compare
EX31_RS24410 -1.0 -4.9 23S rRNA accumulation protein YceD compare
EX31_RS09495 -1.0 -1.7 DUF4186 domain-containing protein compare
EX31_RS02665 -1.0 -4.3 glutathione synthase compare
EX31_RS09375 -1.0 -1.9 gamma-glutamylcyclotransferase compare
EX31_RS09550 -1.0 -1.5 flagellar assembly protein FliH compare
EX31_RS09545 -1.0 -2.8 flagellar motor switch protein FliG compare
EX31_RS08140 -1.0 -1.9 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS01955 -1.0 -1.4 DUF2931 family protein compare
EX31_RS07105 -0.9 -2.1 DUF3811 domain-containing protein compare
EX31_RS18440 -0.9 -2.3 TraR/DksA family transcriptional regulator compare
EX31_RS02310 -0.9 -1.4 hypothetical protein compare
EX31_RS13480 -0.9 -3.5 site-specific tyrosine recombinase XerD compare
EX31_RS06485 -0.9 -0.8 YdbL family protein compare
EX31_RS22800 -0.9 -1.8 ArsC family reductase compare
EX31_RS25720 -0.9 -1.9 hypothetical protein compare
EX31_RS25660 -0.9 -1.5 multidrug efflux pump-associated protein, AcrZ family compare
EX31_RS01790 -0.9 -2.1 excisionase compare
EX31_RS11540 -0.9 -2.7 dCTP deaminase compare
EX31_RS20210 -0.9 -3.5 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS20185 -0.9 -3.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS11240 -0.9 -1.7 GNAT family N-acetyltransferase compare
EX31_RS13925 -0.9 -5.9 FAD-binding oxidoreductase compare
EX31_RS13770 -0.9 -3.3 glycine zipper 2TM domain-containing protein compare
EX31_RS20935 -0.9 -1.2 hypothetical protein compare
EX31_RS00170 -0.9 -1.3 DUF1471 domain-containing protein compare
EX31_RS00230 -0.9 -2.6 ABC transporter permease compare
EX31_RS06140 -0.9 -5.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS15920 -0.9 -2.0 YihD family protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms