Experiment set1IT069 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS07695 +1.4 8.0 DUF3236 domain-containing protein compare
MMP_RS07700 +1.3 8.6 DUF1188 domain-containing protein compare
MMP_RS00730 +1.2 6.0 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS07345 +1.2 6.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS00735 +1.2 6.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS00725 +1.1 6.0 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS06975 +1.1 5.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03340 +1.1 1.6 ABC transporter ATP-binding protein compare
MMP_RS08310 +1.1 4.0 TMEM165/GDT1 family protein compare
MMP_RS06395 +1.1 4.9 ThiF family adenylyltransferase compare
MMP_RS08275 +1.0 8.8 hypothetical protein compare
MMP_RS08850 +1.0 9.4 hypothetical protein compare
MMP_RS08845 +1.0 7.9 archaellum operon transcriptional activator EarA family protein compare
MMP_RS01785 +0.9 4.3 hypothetical protein compare
MMP_RS07835 +0.9 4.0 TldD/PmbA family protein compare
MMP_RS08775 +0.8 4.3 methanogenesis marker 9 domain-containing protein compare
MMP_RS06725 +0.8 5.9 hypothetical protein compare
MMP_RS08615 +0.8 2.7 flagellar protein G compare
MMP_RS08930 +0.8 1.9 hypothetical protein compare
MMP_RS06540 +0.7 2.6 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS08675 +0.7 3.0 class III signal peptide-containing protein compare
MMP_RS07650 +0.7 5.4 TldD/PmbA family protein compare
MMP_RS07840 +0.7 3.2 ribonuclease III compare
MMP_RS08395 +0.7 3.3 DsrE family protein compare
MMP_RS07715 +0.7 5.7 YfcE family phosphodiesterase compare
MMP_RS08750 +0.7 3.0 hypothetical protein compare
MMP_RS07890 +0.7 2.6 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS08640 +0.6 5.2 TIM barrel protein compare
MMP_RS03450 +0.6 2.4 glycine synthesis protein GlyXS (from data) compare
MMP_RS08835 +0.6 3.9 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS02475 +0.6 1.9 hypothetical protein compare
MMP_RS06325 +0.6 2.9 hypothetical protein compare
MMP_RS02675 +0.6 2.4 hypothetical protein compare
MMP_RS07915 +0.6 2.3 DUF4870 domain-containing protein compare
MMP_RS08665 +0.6 5.2 hypothetical protein compare
MMP_RS08480 +0.6 4.6 molybdate ABC transporter substrate-binding protein compare
MMP_RS08980 +0.6 3.5 hypothetical protein compare
MMP_RS08235 +0.6 2.5 hypothetical protein compare
MMP_RS08700 +0.6 4.1 hypothetical protein compare
MMP_RS00655 +0.6 2.2 hypothetical protein compare
MMP_RS07640 +0.6 4.3 mechanosensitive ion channel family protein compare
MMP_RS08390 +0.6 3.5 DUF5400 domain-containing protein compare
MMP_RS05985 +0.6 1.4 hypothetical protein compare
MMP_RS06930 +0.5 4.5 MBL fold metallo-hydrolase compare
MMP_RS01570 +0.5 1.6 hypothetical protein compare
MMP_RS07560 +0.5 3.1 prefoldin subunit alpha compare
MMP_RS07895 +0.5 3.1 cytochrome c compare
MMP_RS09060 +0.5 4.0 hypothetical protein compare
MMP_RS03465 +0.5 1.2 adenine phosphoribosyltransferase compare
MMP_RS08630 +0.5 2.7 archaellar assembly protein FlaJ compare
MMP_RS05835 +0.5 0.8 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS08385 +0.5 3.0 ABC transporter substrate-binding protein compare
MMP_RS00290 +0.5 3.6 hypothetical protein compare
MMP_RS06910 +0.5 3.3 RlmF-related methyltransferase compare
MMP_RS07550 +0.5 3.8 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS07590 +0.5 3.8 hypothetical protein compare
MMP_RS08080 +0.5 2.9 YchF/TatD family DNA exonuclease compare
MMP_RS08410 +0.5 2.8 DUF169 domain-containing protein compare
MMP_RS00315 +0.5 2.9 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS09050 +0.5 2.2 CAP domain-containing protein compare
MMP_RS07985 +0.5 3.8 nitroreductase family protein compare
MMP_RS07775 +0.5 2.6 alanine dehydrogenase compare
MMP_RS07970 +0.5 2.0 hypothetical protein compare
MMP_RS08130 +0.5 4.0 IGHMBP2 family helicase compare
MMP_RS08770 +0.5 2.9 hypothetical protein compare
MMP_RS00245 +0.5 4.4 type II secretion system F family protein compare
MMP_RS06710 +0.5 3.3 selenium-binding protein compare
MMP_RS08260 +0.5 3.7 DUF99 family protein compare
MMP_RS06530 +0.5 3.4 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS00240 +0.5 4.2 type II secretion system F family protein compare
MMP_RS08490 +0.5 4.2 hypothetical protein compare
MMP_RS01290 +0.5 3.4 class III signal peptide-containing protein compare
MMP_RS09065 +0.5 3.3 hypothetical protein compare
MMP_RS03125 +0.5 2.4 cell division ATPase MinD compare
MMP_RS08265 +0.5 2.8 rubrerythrin compare
MMP_RS08755 +0.5 3.9 sodium:solute symporter family protein compare
MMP_RS08555 +0.5 1.6 hypothetical protein compare
MMP_RS08325 +0.5 3.1 hypothetical protein compare
MMP_RS08475 +0.5 3.0 ABC transporter permease compare
MMP_RS08610 +0.5 3.2 flagellar protein F compare
MMP_RS07855 +0.5 3.4 class I SAM-dependent methyltransferase compare
MMP_RS07925 +0.4 2.0 haloacid dehalogenase compare
MMP_RS08380 +0.4 3.2 phosphatase PAP2 family protein compare
MMP_RS07155 +0.4 2.6 MFS transporter compare
MMP_RS08405 +0.4 3.5 MFS transporter compare
MMP_RS07910 +0.4 3.4 NAD(P)H-hydrate dehydratase compare
MMP_RS08160 +0.4 2.2 EamA family transporter compare
MMP_RS06335 +0.4 1.3 HAD family hydrolase compare
MMP_RS07765 +0.4 2.6 sodium:alanine symporter family protein compare
MMP_RS08620 +0.4 2.5 flagellar accessory protein FlaH compare
MMP_RS08670 +0.4 2.9 metallophosphoesterase compare
MMP_RS08245 +0.4 2.8 DUF4013 domain-containing protein compare
MMP_RS06590 +0.4 1.7 GNAT family N-acetyltransferase compare
MMP_RS08205 +0.4 3.0 stage II sporulation protein M compare
MMP_RS08625 +0.4 3.1 type II/IV secretion system ATPase subunit compare
MMP_RS02595 +0.4 0.8 putative zinc-binding protein compare
MMP_RS02960 +0.4 2.7 class I SAM-dependent methyltransferase family protein compare
MMP_RS07645 +0.4 1.5 aldehyde dehydrogenase family protein compare
MMP_RS07880 +0.4 2.4 AAA family ATPase compare
MMP_RS08830 +0.4 1.9 GTP-binding protein compare
MMP_RS00535 +0.4 1.1 TIGR00375 family protein compare
MMP_RS08250 +0.4 2.7 pyruvate kinase compare
MMP_RS07100 +0.4 2.8 hypothetical protein compare
MMP_RS08500 +0.4 2.5 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS00450 +0.4 1.1 4Fe-4S binding protein compare
MMP_RS08290 +0.4 2.5 DNA-binding protein Alba compare
MMP_RS01980 +0.4 3.2 trimeric intracellular cation channel family protein compare
MMP_RS06435 +0.4 1.9 CBS domain-containing protein compare
MMP_RS07145 +0.4 2.4 AmmeMemoRadiSam system protein B compare
MMP_RS03760 +0.4 2.6 hypothetical protein compare
MMP_RS08285 +0.4 2.2 serine/threonine protein kinase compare
MMP_RS06875 +0.4 2.4 FAD-dependent oxidoreductase compare
MMP_RS03625 +0.4 2.5 cell wall-binding protein compare
MMP_RS07140 +0.4 3.1 TIGR00341 family protein compare
MMP_RS06655 +0.3 2.2 glycoside hydrolase family 15 protein compare
MMP_RS05720 +0.3 0.9 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS01435 +0.3 1.3 DMT family transporter compare
MMP_RS09030 +0.3 2.0 hypothetical protein compare
MMP_RS00545 +0.3 1.8 XRE family transcriptional regulator compare
MMP_RS06650 +0.3 1.5 glycoside hydrolase family 57 protein compare
MMP_RS06445 +0.3 2.0 DUF89 domain-containing protein compare
MMP_RS00665 +0.3 2.0 hypothetical protein compare
MMP_RS05955 +0.3 1.2 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS08430 +0.3 1.6 HAD family hydrolase compare
MMP_RS00540 +0.3 2.4 PLP-dependent aminotransferase family protein compare
MMP_RS08230 +0.3 2.1 50S ribosomal protein L11 methyltransferase compare
MMP_RS01675 +0.3 0.9 hypothetical protein compare
MMP_RS05090 +0.3 1.6 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS08415 +0.3 1.3 radical SAM protein compare
MMP_RS00570 +0.3 1.1 protein-L-isoaspartate O-methyltransferase compare
MMP_RS06520 +0.3 1.2 DUF1786 domain-containing protein compare
MMP_RS00250 +0.3 2.7 Flp pilus assembly complex ATPase component TadA compare
MMP_RS05715 +0.3 2.7 hypothetical protein compare
MMP_RS01165 +0.3 2.3 DUF434 domain-containing protein compare
MMP_RS03550 +0.3 0.9 DUF2124 domain-containing protein compare
MMP_RS08470 +0.3 1.2 ATP-binding cassette domain-containing protein compare
MMP_RS01280 +0.3 2.7 DUF515 domain-containing protein compare
MMP_RS00690 +0.3 1.9 MBL fold metallo-hydrolase compare
MMP_RS07860 +0.3 0.4 hypothetical protein compare
MMP_RS05865 +0.3 1.0 hypothetical protein compare
MMP_RS00140 +0.3 1.7 DUF192 domain-containing protein compare
MMP_RS03790 +0.3 1.8 hypothetical protein compare
MMP_RS00185 +0.3 2.5 potassium channel protein compare
MMP_RS07770 +0.3 1.2 alanine racemase compare
MMP_RS01075 +0.3 0.8 hypothetical protein compare
MMP_RS06140 +0.3 1.5 radical SAM protein compare
MMP_RS07570 +0.3 2.2 nucleotidyltransferase family protein compare
MMP_RS06560 +0.3 2.3 hypothetical protein compare
MMP_RS01650 +0.3 0.4 sulfurtransferase TusA family protein compare
MMP_RS01320 +0.3 1.8 hypothetical protein compare
MMP_RS06660 +0.3 1.7 glycosyltransferase family 4 protein compare
MMP_RS06935 +0.3 2.3 protease complex subunit PrcB family protein compare
MMP_RS03895 +0.3 1.2 hypothetical protein compare
MMP_RS06100 +0.3 2.4 GNAT family N-acetyltransferase compare
MMP_RS05355 +0.3 0.4 hypothetical protein compare
MMP_RS07815 +0.3 0.6 DUF2120 domain-containing protein compare
MMP_RS01285 +0.3 2.1 hypothetical protein compare
MMP_RS06490 +0.3 1.9 hypothetical protein compare
MMP_RS06250 +0.3 1.5 hypothetical protein compare
MMP_RS01430 +0.3 2.1 mechanosensitive ion channel family protein compare
MMP_RS06460 +0.3 1.3 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMP_RS06050 +0.3 2.0 ZIP family metal transporter compare
MMP_RS00035 +0.3 2.1 DUF2098 family protein compare
MMP_RS07805 +0.3 1.6 ABC transporter permease compare
MMP_RS07905 +0.3 1.5 DUF3343 domain-containing protein compare
MMP_RS01310 +0.3 2.2 hypothetical protein compare
MMP_RS03150 +0.3 2.1 phosphoglycerate mutase compare
MMP_RS06075 +0.3 1.6 class I SAM-dependent methyltransferase compare
MMP_RS00280 +0.3 1.9 DUF2118 domain-containing protein compare
MMP_RS01295 +0.2 2.0 hypothetical protein compare
MMP_RS03535 +0.2 0.6 helix-turn-helix transcriptional regulator compare
MMP_RS08085 +0.2 1.6 hypothetical protein compare
MMP_RS02815 +0.2 1.0 hypothetical protein compare
MMP_RS07850 +0.2 0.6 prephenate dehydratase compare
MMP_RS00295 +0.2 0.8 gamma carbonic anhydrase family protein compare
MMP_RS03540 +0.2 1.2 DUF2178 domain-containing protein compare
MMP_RS07335 +0.2 0.8 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS01865 +0.2 0.6 GPR1/FUN34/YaaH family transporter compare
MMP_RS00660 +0.2 1.9 alkaline phosphatase family protein compare
MMP_RS02255 +0.2 1.5 hypothetical protein compare
MMP_RS07150 +0.2 1.2 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS01055 +0.2 0.8 hypothetical protein compare
MMP_RS01420 +0.2 0.6 hypothetical protein compare
MMP_RS08455 +0.2 1.1 multiprotein bridging factor aMBF1 compare
MMP_RS01120 +0.2 1.4 permease compare
MMP_RS02290 +0.2 1.3 MBL fold metallo-hydrolase compare
MMP_RS01630 +0.2 1.6 N-glycosylase/DNA lyase compare
MMP_RS00650 +0.2 1.3 ABC transporter ATP-binding protein compare
MMP_RS09035 +0.2 1.1 hypothetical protein compare
MMP_RS06550 +0.2 1.5 AMP-binding protein compare
MMP_RS06115 +0.2 1.9 class II aldolase/adducin family protein compare
MMP_RS03420 +0.2 0.8 acetolactate synthase small subunit compare
MMP_RS08090 +0.2 1.3 hypothetical protein compare
MMP_RS06610 +0.2 0.7 DUF2334 domain-containing protein compare
MMP_RS01125 +0.2 1.4 thioredoxin family protein compare
MMP_RS07680 +0.2 1.3 DUF366 family protein compare
MMP_RS07595 +0.2 1.6 hypothetical protein compare
MMP_RS06045 +0.2 1.3 DNA polymerase compare
MMP_RS07085 +0.2 1.2 ribonuclease HII compare
MMP_RS08535 +0.2 1.2 bis-aminopropyl spermidine synthase family protein compare


Specific Phenotypes

For 5 genes in this experiment

For mixed community 1,3-Propanediol in Methanococcus maripaludis S2

For mixed community 1,3-Propanediol across organisms