Experiment set1IT069 for Pantoea sp. MT58

Compare to:

Cobalt chloride hexahydrate 10 uM, aerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_14470 +1.0 2.5 YbaB/EbfC family nucleoid-associated protein compare
IAI47_16420 +1.0 8.7 LacI family DNA-binding transcriptional regulator compare
IAI47_17900 +1.0 1.7 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_06360 +0.9 2.4 NADH-quinone oxidoreductase subunit A compare
IAI47_06385 +0.9 3.9 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_09550 +0.9 4.5 hypothetical protein compare
IAI47_07475 +0.8 1.7 hypothetical protein compare
IAI47_21655 +0.8 1.1 LacI family DNA-binding transcriptional regulator compare
IAI47_21450 +0.8 1.4 general stress protein compare
IAI47_17970 +0.8 2.9 hypothetical protein compare
IAI47_01780 +0.7 1.6 Fe-S biogenesis protein NfuA compare
IAI47_11735 +0.7 2.3 histidinol-phosphatase compare
IAI47_17620 +0.7 2.8 VOC family metalloprotein YjdN compare
IAI47_17205 +0.7 2.1 PTS phosphocarrier protein NPr compare
IAI47_11830 +0.7 5.5 muramoyltetrapeptide carboxypeptidase compare
IAI47_11375 +0.7 1.3 hypothetical protein compare
IAI47_08030 +0.7 5.6 flagellar M-ring protein FliF compare
IAI47_06395 +0.7 1.1 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_12665 +0.7 2.8 ribosome modulation factor compare
IAI47_08010 +0.6 4.1 flagella biosynthesis chaperone FliJ compare
IAI47_08005 +0.6 3.7 flagellar hook-length control protein FliK compare
IAI47_01180 +0.6 0.9 prolyl oligopeptidase family serine peptidase compare
IAI47_07975 +0.6 2.7 flagellar biosynthesis protein FliQ compare
IAI47_09360 +0.6 0.7 peptide ABC transporter ATP-binding protein SapF compare
IAI47_18415 +0.6 2.8 lipoprotein compare
IAI47_07885 +0.6 0.7 tRNA-Asn compare
IAI47_00770 +0.6 0.8 general stress protein compare
IAI47_08015 +0.6 4.2 flagellum-specific ATP synthase FliI compare
IAI47_08000 +0.6 4.3 flagellar basal body-associated protein FliL compare
IAI47_07970 +0.6 3.6 flagellar type III secretion system protein FliR compare
IAI47_08020 +0.6 3.7 flagellar assembly protein FliH compare
IAI47_08350 +0.6 4.4 flagellar biosynthesis protein FlhA compare
IAI47_19350 +0.6 2.3 DUF305 domain-containing protein compare
IAI47_06455 +0.6 2.4 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_09670 +0.6 2.9 DksA/TraR family C4-type zinc finger protein compare
IAI47_07800 +0.5 2.6 phosphonate ABC transporter ATP-binding protein compare
IAI47_07485 +0.5 1.9 DUF4756 family protein compare
IAI47_16415 +0.5 4.3 nucleoside hydrolase compare
IAI47_00515 +0.5 0.8 DNA-directed RNA polymerase subunit omega compare
IAI47_08280 +0.5 3.6 flagellar transcriptional regulator FlhD compare
IAI47_21505 +0.5 2.5 DUF2256 domain-containing protein compare
IAI47_08285 +0.5 3.9 flagellar transcriptional regulator FlhC compare
IAI47_04800 +0.5 0.9 RnfH family protein compare
IAI47_13850 +0.5 2.2 LexA regulated protein compare
IAI47_08160 +0.5 3.0 RNA polymerase sigma factor FliA compare
IAI47_14910 +0.5 2.7 recombination-associated protein RdgC compare
IAI47_12435 +0.5 1.5 hypothetical protein compare
IAI47_12135 +0.5 3.9 flagellar basal body L-ring protein FlgH compare
IAI47_17080 +0.5 2.6 transcription elongation factor GreA compare
IAI47_15415 +0.5 2.4 aminoacyl-tRNA hydrolase compare
IAI47_16520 +0.5 3.5 hypothetical protein compare
IAI47_11300 +0.5 1.9 stress-induced protein YchH compare
IAI47_12165 +0.5 2.8 flagellar basal body rod protein FlgB compare
IAI47_20295 +0.5 2.6 DUF1427 family protein compare
IAI47_07985 +0.5 2.7 flagellar biosynthetic protein FliO compare
IAI47_00935 +0.5 2.1 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_12160 +0.5 2.9 flagellar basal body rod protein FlgC compare
IAI47_04705 +0.4 0.9 hypothetical protein compare
IAI47_06250 +0.4 3.5 DedA family protein compare
IAI47_06780 +0.4 2.5 iron-sulfur cluster carrier protein ApbC compare
IAI47_04545 +0.4 2.2 glutaredoxin-like protein NrdH compare
IAI47_12150 +0.4 3.7 flagellar hook protein FlgE compare
IAI47_21880 +0.4 0.5 ParA family protein compare
IAI47_12985 +0.4 1.6 heavy metal-binding domain-containing protein compare
IAI47_10170 +0.4 2.8 hypothetical protein compare
IAI47_19050 +0.4 1.1 hypothetical protein compare
IAI47_12720 +0.4 2.2 NADPH-dependent FMN reductase compare
IAI47_07350 +0.4 0.6 hypothetical protein compare
IAI47_11475 +0.4 0.8 hypothetical protein compare
IAI47_08025 +0.4 2.6 flagellar motor switch protein FliG compare
IAI47_16425 +0.4 3.0 MHS family MFS transporter compare
IAI47_11625 +0.4 1.0 DUF1311 domain-containing protein compare
IAI47_02895 +0.4 3.5 DedA family protein compare
IAI47_12130 +0.4 3.4 flagellar basal body P-ring protein FlgI compare
IAI47_00845 +0.4 2.3 HslU--HslV peptidase ATPase subunit compare
IAI47_05735 +0.4 1.6 hypothetical protein compare
IAI47_05975 +0.4 2.3 NTP pyrophosphohydrolase compare
IAI47_15735 +0.4 2.4 four-carbon acid sugar kinase family protein compare
IAI47_08745 +0.4 1.2 transcription antiterminator/RNA stability regulator CspE compare
IAI47_06965 +0.4 1.0 glycosyltransferase family 2 protein compare
IAI47_11210 +0.4 2.7 type VI secretion system-associated protein TagF compare
IAI47_15815 +0.4 1.7 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
IAI47_12155 +0.4 3.0 flagellar hook assembly protein FlgD compare
IAI47_11545 +0.4 2.0 hypothetical protein compare
IAI47_17645 +0.4 1.2 hypothetical protein compare
IAI47_06030 +0.4 1.8 hypothetical protein compare
IAI47_12300 +0.4 1.2 hypothetical protein compare
IAI47_08200 +0.4 1.7 hypothetical protein compare
IAI47_04110 +0.4 3.6 two-component sensor histidine kinase BarA compare
IAI47_08345 +0.4 3.0 flagellar type III secretion system protein FlhB compare
IAI47_21355 +0.4 0.9 DUF3606 domain-containing protein compare
IAI47_08465 +0.4 2.5 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_11215 +0.4 2.9 type VI secretion system-associated FHA domain protein TagH compare
IAI47_12170 +0.4 2.5 flagellar basal body P-ring formation protein FlgA compare
IAI47_00370 +0.4 3.1 ribokinase compare
IAI47_04710 +0.4 1.5 hypothetical protein compare
IAI47_02035 +0.4 0.8 YheV family putative metal-binding protein compare
IAI47_20005 +0.4 1.2 PTS sugar transporter subunit IIA compare
IAI47_17710 +0.4 2.8 glutamate/aspartate:proton symporter GltP compare
IAI47_01750 +0.4 2.1 glycerol-3-phosphate dehydrogenase compare
IAI47_06170 +0.4 1.4 YfcL family protein compare
IAI47_10210 +0.4 1.7 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
IAI47_05860 +0.4 2.0 YlcG family protein compare
IAI47_11710 +0.4 2.1 methyltransferase domain-containing protein compare
IAI47_07965 +0.4 1.9 transcriptional regulator RcsA compare
IAI47_18075 +0.4 2.5 NAD(+) diphosphatase compare
IAI47_01205 +0.4 1.8 GNAT family N-acetyltransferase compare
IAI47_00850 +0.4 1.9 ATP-dependent protease subunit HslV compare
IAI47_09120 +0.4 1.3 hypothetical protein compare
IAI47_20840 +0.4 1.4 Lrp/AsnC family transcriptional regulator compare
IAI47_05875 +0.4 2.5 lysozyme compare
IAI47_11110 +0.3 1.7 MarR family transcriptional regulator compare
IAI47_09980 +0.3 2.0 VOC family protein compare
IAI47_10930 +0.3 1.9 C40 family peptidase compare
IAI47_17825 +0.3 1.8 MmcQ/YjbR family DNA-binding protein compare
IAI47_15600 +0.3 0.9 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_06365 +0.3 1.2 NADH-quinone oxidoreductase subunit B compare
IAI47_01535 +0.3 1.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_02385 +0.3 2.5 tRNA dihydrouridine synthase DusB compare
IAI47_08705 +0.3 2.8 carboxy terminal-processing peptidase compare
IAI47_21515 +0.3 1.9 porin compare
IAI47_13935 +0.3 0.7 tRNA-Gln compare
IAI47_06470 +0.3 2.7 two-component system sensor histidine kinase RcsC compare
IAI47_09955 +0.3 0.8 SDR family oxidoreductase compare
IAI47_06655 +0.3 1.0 1-phosphofructokinase compare
IAI47_12935 +0.3 1.8 leucyl/phenylalanyl-tRNA--protein transferase compare
IAI47_08470 +0.3 2.7 murein DD-endopeptidase MepM compare
IAI47_04070 +0.3 1.3 flavodoxin compare
IAI47_10470 +0.3 1.1 electron transport complex subunit E compare
IAI47_08460 +0.3 2.3 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_12305 +0.3 2.0 hypothetical protein compare
IAI47_13145 +0.3 2.0 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_01725 +0.3 2.1 biotin-independent malonate decarboxylase subunit gamma compare
IAI47_12140 +0.3 2.2 flagellar basal-body rod protein FlgG compare
IAI47_14960 +0.3 1.3 anti-adapter protein IraP compare
IAI47_06420 +0.3 1.0 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_16595 +0.3 1.0 DUF4102 domain-containing protein compare
IAI47_04855 +0.3 1.1 anti-sigma-E factor RseA compare
IAI47_10740 +0.3 1.7 hypothetical protein compare
IAI47_13645 +0.3 2.0 helix-turn-helix domain-containing protein compare
IAI47_09750 +0.3 2.2 ROK family transcriptional regulator compare
IAI47_08625 +0.3 1.4 hypothetical protein compare
IAI47_06695 +0.3 1.6 ABC transporter ATP-binding protein compare
IAI47_12570 +0.3 0.6 tRNA-Ser compare
IAI47_12145 +0.3 1.9 flagellar basal body rod protein FlgF compare
IAI47_10280 +0.3 2.5 virulence factor SrfB compare
IAI47_01655 +0.3 1.7 gluconokinase compare
IAI47_00835 +0.3 1.1 cell division protein ZapB compare
IAI47_15025 +0.3 0.7 transcriptional regulator LldR compare
IAI47_04950 +0.3 1.8 nitrogen regulatory protein P-II compare
IAI47_12125 +0.3 2.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_21365 +0.3 1.7 Hsp20 family protein compare
IAI47_10670 +0.3 1.7 SDR family oxidoreductase compare
IAI47_09675 +0.3 0.7 YoaK family small membrane protein compare
IAI47_19295 +0.3 0.8 hypothetical protein compare
IAI47_13075 +0.3 1.7 hypothetical protein compare
IAI47_12470 +0.3 2.6 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_07410 +0.3 1.6 LysR family transcriptional regulator compare
IAI47_10500 +0.3 2.2 dipeptide/tripeptide permease DtpA compare
IAI47_13720 +0.3 1.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_05830 +0.3 1.0 hypothetical protein compare
IAI47_19200 +0.3 1.6 GNAT family N-acetyltransferase compare
IAI47_07980 +0.3 1.9 flagellar type III secretion system pore protein FliP compare
IAI47_00440 +0.3 1.7 Der GTPase-activating protein YihI compare
IAI47_04530 +0.3 2.2 class 1b ribonucleoside-diphosphate reductase subunit beta compare
IAI47_07920 +0.3 1.6 hypothetical protein compare
IAI47_16245 +0.3 1.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
IAI47_15625 +0.3 1.2 RNA 2',3'-cyclic phosphodiesterase compare
IAI47_20045 +0.3 1.6 amino acid ABC transporter ATP-binding protein compare
IAI47_02765 +0.3 2.3 metalloprotease PmbA compare
IAI47_01230 +0.3 1.7 K(+)-transporting ATPase subunit F compare
IAI47_19500 +0.3 1.4 Insecticidal toxin complex protein tccz compare
IAI47_05965 +0.3 1.7 DUF3277 family protein compare
IAI47_09755 +0.3 1.6 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_10690 +0.3 1.3 hypothetical protein compare
IAI47_12475 +0.3 1.5 DUF2594 family protein compare
IAI47_01170 +0.3 1.8 fluoride efflux transporter CrcB compare
IAI47_16135 +0.3 1.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_17460 +0.3 1.4 DotU family type IV/VI secretion system protein compare
IAI47_09725 +0.3 1.5 DUF1471 domain-containing protein compare
IAI47_19040 +0.3 1.4 hypothetical protein compare
IAI47_07270 +0.3 1.9 TetR family transcriptional regulator compare
IAI47_11220 +0.3 1.8 serine/threonine-protein phosphatase compare
IAI47_12770 +0.3 1.5 MBL fold metallo-hydrolase compare
IAI47_08075 +0.3 1.7 hypothetical protein compare
IAI47_18145 +0.3 0.4 elongation factor Tu compare
IAI47_03195 +0.3 0.7 cell division protein FtsP compare
IAI47_07515 +0.3 1.2 hypothetical protein compare
IAI47_21015 +0.3 1.0 helix-turn-helix transcriptional regulator compare
IAI47_12340 +0.3 1.7 outer membrane lipoprotein carrier protein LolA compare
IAI47_14145 +0.3 1.3 hypothetical protein compare
IAI47_10835 +0.3 0.4 tRNA-Val compare
IAI47_06545 +0.3 1.2 4'-phosphopantetheinyl transferase superfamily protein compare
IAI47_05750 +0.3 1.8 hypothetical protein compare
IAI47_13640 +0.3 1.1 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI47_01335 +0.3 1.1 CPBP family intramembrane metalloprotease compare
IAI47_00430 +0.3 2.0 DNA polymerase I compare
IAI47_11465 +0.3 1.7 type VI secretion system tip protein VgrG compare
IAI47_11895 +0.3 1.8 glycosyltransferase family 9 protein compare
IAI47_00840 +0.3 1.1 ribonuclease E activity regulator RraA compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Cobalt chloride hexahydrate across organisms