Experiment set1IT068 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -4.7 -3.3 3-isopropylmalate dehydratase compare
AO353_07220 -4.6 -6.3 anthranilate synthase compare
AO353_20635 -4.5 -11.7 3-isopropylmalate dehydrogenase compare
AO353_02070 -4.5 -6.1 prephenate dehydratase compare
AO353_13070 -4.4 -7.9 phosphoserine phosphatase compare
AO353_07210 -4.2 -5.8 indole-3-glycerol-phosphate synthase compare
AO353_12520 -4.2 -12.0 glutamate synthase compare
AO353_12070 -4.1 -9.1 imidazoleglycerol-phosphate dehydratase compare
AO353_12515 -4.1 -22.1 glutamate synthase compare
AO353_09240 -4.1 -2.8 acetylglutamate kinase compare
AO353_07230 -4.0 -16.6 anthranilate synthase compare
AO353_13165 -3.9 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08510 -3.9 -4.6 3-phosphoglycerate dehydrogenase compare
AO353_14505 -3.8 -13.0 ketol-acid reductoisomerase compare
AO353_03360 -3.8 -9.5 glucose-6-phosphate dehydrogenase compare
AO353_12085 -3.8 -8.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20695 -3.8 -7.2 O-succinylhomoserine sulfhydrylase compare
AO353_08185 -3.8 -11.6 methionine biosynthesis protein MetW compare
AO353_12365 -3.8 -5.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_05115 -3.7 -11.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20665 -3.7 -11.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_02075 -3.7 -12.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_00310 -3.7 -11.0 transaldolase compare
AO353_20620 -3.7 -8.4 isopropylmalate isomerase compare
AO353_12075 -3.7 -8.5 imidazole glycerol phosphate synthase subunit HisH compare
AO353_22800 -3.7 -4.9 sulfite reductase compare
AO353_14495 -3.6 -12.3 acetolactate synthase 3 catalytic subunit compare
AO353_08475 -3.6 -10.5 phosphoserine phosphatase compare
AO353_08345 -3.6 -10.2 dihydroxy-acid dehydratase compare
AO353_02685 -3.6 -4.9 phosphoribosylglycinamide formyltransferase compare
AO353_07155 -3.6 -8.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10670 -3.5 -8.8 shikimate dehydrogenase compare
AO353_05110 -3.5 -12.4 histidinol dehydrogenase compare
AO353_12500 -3.5 -2.4 shikimate kinase compare
AO353_08685 -3.4 -9.8 N-acetylglutamate synthase compare
AO353_09000 -3.4 -6.5 argininosuccinate lyase compare
AO353_20540 -3.4 -8.9 aromatic amino acid aminotransferase compare
AO353_12090 -3.3 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_04105 -3.3 -9.8 argininosuccinate synthase compare
AO353_16940 -3.3 -7.3 deoxycytidine triphosphate deaminase compare
AO353_10710 -3.3 -6.3 tryptophan synthase subunit beta compare
AO353_04355 -3.2 -3.1 homoserine dehydrogenase compare
AO353_08180 -3.2 -14.2 homoserine O-acetyltransferase compare
AO353_10030 -3.1 -12.4 pyruvate carboxylase subunit A compare
AO353_19060 -3.1 -5.9 CysB family transcriptional regulator compare
AO353_04155 -3.1 -13.5 ornithine carbamoyltransferase compare
AO353_10035 -3.0 -10.2 LysR family transcriptional regulator compare
AO353_07215 -3.0 -9.0 anthranilate phosphoribosyltransferase compare
AO353_12115 -3.0 -4.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_14400 -2.9 -5.6 Fis family transcriptional regulator compare
AO353_10025 -2.9 -15.6 pyruvate carboxylase subunit B compare
AO353_14500 -2.9 -8.1 acetolactate synthase 3 regulatory subunit compare
AO353_08015 -2.9 -8.3 5,10-methylenetetrahydrofolate reductase compare
AO353_14595 -2.9 -11.2 carbonate dehydratase compare
AO353_12360 -2.8 -10.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08165 -2.7 -3.2 pyrroline-5-carboxylate reductase compare
AO353_14115 -2.7 -7.4 gamma-glutamyl kinase compare
AO353_06495 -2.7 -6.6 gamma-glutamyl phosphate reductase compare
AO353_07525 -2.6 -14.6 biotin synthase compare
AO353_02250 -2.6 -4.8 chorismate synthase compare
AO353_15925 -2.5 -10.8 2-isopropylmalate synthase compare
AO353_09285 -2.4 -11.1 reactive intermediate/imine deaminase compare
AO353_00825 -2.3 -5.0 porin compare
AO353_04175 -2.3 -5.7 glycerol uptake facilitator GlpF compare
AO353_03580 -2.3 -4.6 ATP-dependent DNA helicase RuvB compare
AO353_13140 -2.3 -6.9 tRNA dimethylallyltransferase compare
AO353_09890 -2.2 -6.5 phosphate ABC transporter ATP-binding protein compare
AO353_11770 -2.2 -2.6 molecular chaperone Hsp33 compare
AO353_07505 -2.2 -9.5 dethiobiotin synthetase compare
AO353_07510 -2.2 -9.5 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07355 -2.1 -7.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_18715 -2.1 -2.3 histidine kinase compare
AO353_14370 -2.0 -7.2 glucose-6-phosphate isomerase compare
AO353_07520 -2.0 -11.6 8-amino-7-oxononanoate synthase compare
AO353_10445 -2.0 -2.7 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_10705 -2.0 -4.2 tryptophan synthase subunit alpha compare
AO353_03420 -1.9 -5.4 phosphogluconate dehydratase compare
AO353_12420 -1.8 -3.8 predicted FeS cluster maintenance protein (from data) compare
AO353_05105 -1.8 -9.5 histidinol-phosphate aminotransferase compare
AO353_03020 -1.8 -6.9 arginine N-succinyltransferase compare
AO353_12145 -1.7 -4.7 nitrogen regulation protein NR(I) compare
AO353_14775 -1.7 -6.5 hypothetical protein compare
AO353_06320 -1.7 -4.8 AsnC family transcriptional regulator compare
AO353_12105 -1.7 -6.6 peptidase S41 compare
AO353_08045 -1.7 -11.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_11165 -1.7 -9.0 hypothetical protein compare
AO353_03615 -1.7 -3.5 cold-shock protein compare
AO353_27650 -1.7 -4.6 cell division protein FtsK compare
AO353_06040 -1.7 -3.8 exodeoxyribonuclease V subunit alpha compare
AO353_12510 -1.6 -9.4 cell division protein compare
AO353_03590 -1.6 -3.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_13640 -1.6 -4.1 histidine kinase compare
AO353_03585 -1.5 -3.2 ATP-dependent DNA helicase RuvA compare
AO353_16805 -1.5 -5.9 recombinase RecA compare
AO353_03015 -1.5 -4.8 arginine N-succinyltransferase compare
AO353_15445 -1.5 -3.7 disulfide bond formation protein B compare
AO353_22810 -1.5 -1.7 hypothetical protein compare
AO353_01685 -1.5 -1.4 hypothetical protein compare
AO353_13100 -1.5 -2.0 GTPase RsgA compare
AO353_13225 -1.5 -3.5 50S ribosomal protein L9 compare
AO353_21625 -1.4 -2.1 Fe/S biogenesis protein NfuA compare
AO353_06045 -1.4 -6.4 exodeoxyribonuclease V subunit beta compare
AO353_08265 -1.4 -5.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_20175 -1.4 -3.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_03425 -1.4 -7.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_08880 -1.4 -2.5 exopolyphosphatase compare
AO353_11730 -1.4 -7.9 glutamate--cysteine ligase compare
AO353_02720 -1.4 -4.1 cysteine synthase compare
AO353_11850 -1.3 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_07315 -1.3 -2.2 rRNA methyltransferase compare
AO353_03415 -1.3 -5.0 glucokinase compare
AO353_19145 -1.3 -4.1 protease HtpX compare
AO353_14220 -1.3 -1.9 ribosomal large subunit pseudouridine synthase D compare
AO353_08885 -1.3 -9.7 polyphosphate kinase compare
AO353_20660 -1.3 -2.7 pseudouridine synthase compare
AO353_03100 -1.3 -1.9 XRE family transcriptional regulator compare
AO353_05625 -1.3 -1.5 transcription elongation factor GreA compare
AO353_16450 -1.3 -7.9 protein-PII uridylyltransferase compare
AO353_06795 -1.2 -1.7 Isochorismatase compare
AO353_03775 -1.2 -6.3 pyruvate kinase compare
AO353_16195 -1.2 -2.1 DNA mismatch repair protein MutT compare
AO353_04220 -1.2 -3.7 chemotaxis protein CheY compare
AO353_08780 -1.2 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_10730 -1.2 -1.6 hypothetical protein compare
AO353_09915 -1.2 -4.8 long-chain acyl-CoA thioester hydrolase compare
AO353_06050 -1.1 -5.1 exodeoxyribonuclease V subunit gamma compare
AO353_01375 -1.1 -4.8 phosphate acyltransferase compare
AO353_10455 -1.1 -1.8 tRNA modification GTPase MnmE compare
AO353_07325 -1.1 -1.5 diadenosine tetraphosphatase compare
AO353_13395 -1.1 -1.8 protein hupE compare
AO353_19360 -1.1 -2.5 peroxiredoxin compare
AO353_28295 -1.1 -2.4 GNAT family acetyltransferase compare
AO353_12880 -1.1 -2.3 ADP-heptose--LPS heptosyltransferase compare
AO353_13865 -1.1 -2.7 hypothetical protein compare
AO353_00490 -1.1 -2.0 PasA protein compare
AO353_16440 -1.1 -2.3 ArsC family transcriptional regulator compare
AO353_02710 -1.1 -7.2 (p)ppGpp synthetase compare
AO353_14150 -1.0 -1.8 peptidylprolyl isomerase compare
AO353_07465 -1.0 -2.6 addiction module toxin RelE compare
AO353_13685 -1.0 -4.0 3-dehydroquinate dehydratase compare
AO353_24340 -1.0 -2.0 TetR family transcriptional regulator compare
AO353_14420 -1.0 -3.2 molecular chaperone DnaK compare
AO353_11530 -1.0 -5.4 diguanylate cyclase compare
AO353_07075 -1.0 -3.8 elongation factor Tu compare
AO353_05075 -1.0 -6.3 adenylylsulfate kinase compare
AO353_02810 -1.0 -5.2 histidine kinase compare
AO353_07515 -1.0 -1.7 transporter compare
AO353_01410 -1.0 -2.6 ribonuclease E compare
AO353_23495 -1.0 -2.4 SAM-dependent methyltransferase compare
AO353_24605 -1.0 -2.4 hypothetical protein compare
AO353_03245 -0.9 -4.8 permease DsdX compare
AO353_14405 -0.9 -5.8 ATPase compare
AO353_10950 -0.9 -5.7 thiol:disulfide interchange protein compare
AO353_03630 -0.9 -6.7 porin compare
AO353_04565 -0.9 -3.8 nucleoid-associated protein compare
AO353_20170 -0.9 -3.3 trigger factor compare
AO353_05080 -0.9 -5.8 sulfate adenylyltransferase compare
AO353_13605 -0.9 -5.5 oxidoreductase compare
AO353_03025 -0.9 -3.6 acetylornithine aminotransferase compare
AO353_27130 -0.9 -1.9 hypothetical protein compare
AO353_06415 -0.9 -2.7 hypothetical protein compare
AO353_13160 -0.9 -1.8 membrane protease HflC compare
AO353_23895 -0.9 -2.7 phospholipase compare
AO353_24415 -0.9 -1.6 glutamine ABC transporter ATP-binding protein compare
AO353_10040 -0.9 -5.0 transcriptional regulator compare
AO353_10320 -0.9 -1.5 hypothetical protein compare
AO353_05125 -0.9 -3.5 BolA family transcriptional regulator compare
AO353_05420 -0.9 -1.5 peptide chain release factor 3 compare
AO353_18130 -0.8 -1.6 hypothetical protein compare
AO353_12150 -0.8 -2.8 histidine kinase compare
AO353_03755 -0.8 -3.6 hypothetical protein compare
AO353_01595 -0.8 -1.0 Flp pilus assembly protein CpaB compare
AO353_26830 -0.8 -2.9 histidine kinase compare
AO353_15185 -0.8 -3.2 ATPase compare
AO353_09905 -0.8 -4.5 phosphate-binding protein compare
AO353_11695 -0.8 -2.2 hypothetical protein compare
AO353_21615 -0.8 -5.4 methionine synthase compare
AO353_10435 -0.8 -4.8 chromosome partitioning protein compare
AO353_13245 -0.8 -3.9 hypothetical protein compare
AO353_21655 -0.8 -2.6 cobalamin biosynthesis protein CobW compare
AO353_05690 -0.8 -2.4 SsrA-binding protein compare
AO353_09840 -0.8 -2.7 chorismate--pyruvate lyase compare
AO353_02640 -0.8 -1.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_20565 -0.8 -1.2 tRNA-Ala compare
AO353_09050 -0.8 -2.2 recombinase XerC compare
AO353_00515 -0.8 -2.3 hypothetical protein compare
AO353_16210 -0.8 -5.4 XRE family transcriptional regulator compare
AO353_13200 -0.8 -5.0 exoribonuclease R compare
AO353_00975 -0.8 -1.7 hypothetical protein compare
AO353_00750 -0.8 -2.5 GntR family transcriptional regulator compare
AO353_27000 -0.8 -1.6 hypothetical protein compare
AO353_17900 -0.7 -2.8 RND transporter MFP subunit compare
AO353_27950 -0.7 -1.4 hypothetical protein compare
AO353_17035 -0.7 -2.9 hypothetical protein compare
AO353_19250 -0.7 -1.7 molybdenum cofactor guanylyltransferase compare
AO353_14940 -0.7 -2.3 malate:quinone oxidoreductase compare
AO353_21935 -0.7 -1.7 nitrite reductase compare
AO353_29145 -0.7 -2.6 HxlR family transcriptional regulator compare
AO353_09705 -0.7 -1.8 hypothetical protein compare
AO353_09135 -0.7 -1.2 cytochrome C compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in carbon source experiments

For carbon source D-Glucose across organisms