Experiment set1IT068 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_02735 +1.1 10.4 chemotaxis protein CheY compare
AO353_25585 +1.1 2.9 argininosuccinate lyase compare
AO353_17935 +1.1 2.9 hypothetical protein compare
AO353_21830 +1.0 8.6 chemotaxis protein CheY compare
AO353_07250 +0.8 2.2 polyamine ABC transporter permease compare
AO353_19000 +0.8 2.1 ABC transporter compare
AO353_18560 +0.8 1.9 class I peptide chain release factor compare
AO353_24440 +0.8 2.4 reactive intermediate/imine deaminase compare
AO353_20410 +0.8 2.6 hypothetical protein compare
AO353_01190 +0.8 2.3 hypothetical protein compare
AO353_13300 +0.8 1.9 LOG family protein compare
AO353_20495 +0.7 2.2 NUDIX hydrolase compare
AO353_03605 +0.7 1.4 FmdB family transcriptional regulator compare
AO353_23410 +0.7 1.4 hypothetical protein compare
AO353_21990 +0.7 3.0 cytochrome C compare
AO353_27090 +0.7 2.1 hypothetical protein compare
AO353_04810 +0.7 1.6 hypothetical protein compare
AO353_03035 +0.7 3.3 AraC family transcriptional regulator compare
AO353_27710 +0.7 1.6 DNA repair protein compare
AO353_20925 +0.6 2.1 hypothetical protein compare
AO353_13420 +0.6 1.7 hypothetical protein compare
AO353_19340 +0.6 5.4 amino acid ABC transporter substrate-binding protein compare
AO353_08435 +0.6 2.5 phosphatidylglycerophosphatase compare
AO353_12940 +0.6 4.2 glycosyl transferase compare
AO353_09945 +0.6 2.8 LysR family transcriptional regulator compare
AO353_02345 +0.6 2.2 purine permease compare
AO353_09720 +0.6 0.8 hypothetical protein compare
AO353_23930 +0.6 2.4 chemotaxis protein CheY compare
AO353_05880 +0.6 1.0 plasmid stabilization protein compare
AO353_28945 +0.6 1.8 potassium-transporting ATPase subunit B compare
AO353_15640 +0.6 1.8 acetylornithine aminotransferase compare
AO353_03000 +0.6 2.1 topoisomerase II compare
AO353_22645 +0.6 1.1 hypothetical protein compare
AO353_23600 +0.6 2.6 cobalt chelatase compare
AO353_28390 +0.6 2.4 hypothetical protein compare
AO353_02660 +0.6 2.7 peptidase P60 compare
AO353_11185 +0.6 4.6 channel protein TolC compare
AO353_26045 +0.5 1.2 hypothetical protein compare
AO353_27520 +0.5 2.1 3-demethylubiquinone-9 3-methyltransferase compare
AO353_22360 +0.5 1.8 ABC transporter ATP-binding protein compare
AO353_11190 +0.5 4.4 ABC transporter compare
AO353_16655 +0.5 1.8 phage baseplate protein compare
AO353_12690 +0.5 0.8 acyl carrier protein compare
AO353_11195 +0.5 4.6 hemolysin secretion protein D compare
AO353_14860 +0.5 2.3 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_04410 +0.5 1.9 phosphoribosylglycinamide formyltransferase compare
AO353_13660 +0.5 3.6 tRNA-dihydrouridine synthase B compare
AO353_26610 +0.5 2.9 hypothetical protein compare
AO353_04500 +0.5 1.3 DNA repair protein RecO compare
AO353_17410 +0.5 1.1 arylsulfate sulfotransferase compare
AO353_27350 +0.5 1.2 hypothetical protein compare
AO353_00260 +0.5 1.6 hypothetical protein compare
AO353_12590 +0.5 2.3 hypothetical protein compare
AO353_25835 +0.5 2.5 6-phosphogluconate dehydrogenase compare
AO353_26180 +0.5 2.2 phage tail protein compare
AO353_26550 +0.5 0.9 hypothetical protein compare
AO353_22700 +0.5 0.9 LexA family transcriptional regulator compare
AO353_03805 +0.5 1.8 C4-dicarboxylate ABC transporter compare
AO353_20255 +0.5 2.0 transcriptional regulator compare
AO353_24990 +0.5 1.4 translation elongation factor compare
AO353_11180 +0.5 4.4 large adhesive protein compare
AO353_04930 +0.5 1.4 flavodoxin compare
AO353_29270 +0.5 1.5 type VI secretion system protein compare
AO353_04585 +0.5 1.9 ketosteroid isomerase compare
AO353_04090 +0.5 1.3 leucyl-tRNA synthetase compare
AO353_11155 +0.5 4.1 thioesterase compare
AO353_12575 +0.5 1.5 type II secretion system protein GspJ compare
AO353_27890 +0.5 2.8 RpiR family transcriptional regulator compare
AO353_13950 +0.5 2.2 50S rRNA methyltransferase compare
AO353_05490 +0.5 2.3 transcriptional regulator compare
AO353_14865 +0.5 2.4 cupin compare
AO353_11160 +0.4 2.8 GntR family transcriptional regulator compare
AO353_16530 +0.4 0.5 ribonuclease HII compare
AO353_23285 +0.4 1.2 hypothetical protein compare
AO353_16615 +0.4 3.7 RNA polymerase sigma factor RpoS compare
AO353_27435 +0.4 0.6 hypothetical protein compare
AO353_25925 +0.4 1.3 hypothetical protein compare
AO353_21495 +0.4 2.1 short-chain dehydrogenase compare
AO353_17005 +0.4 1.5 hypothetical protein compare
AO353_07875 +0.4 1.6 hypothetical protein compare
AO353_11170 +0.4 3.3 hypothetical protein compare
AO353_02525 +0.4 2.0 molecular chaperone compare
AO353_00170 +0.4 1.2 lysozyme compare
AO353_21410 +0.4 1.2 hypothetical protein compare
AO353_24970 +0.4 2.1 formate dehydrogenase compare
AO353_05415 +0.4 1.4 hypothetical protein compare
AO353_28555 +0.4 0.7 LysR family transcriptional regulator compare
AO353_15410 +0.4 1.0 hypothetical protein compare
AO353_25445 +0.4 2.0 carbonic anhydrase compare
AO353_24810 +0.4 2.0 transcriptional regulator compare
AO353_14085 +0.4 1.5 hypothetical protein compare
AO353_02520 +0.4 1.3 sodium transporter compare
AO353_02205 +0.4 2.6 hypothetical protein compare
AO353_26220 +0.4 1.3 hypothetical protein compare
AO353_20975 +0.4 2.4 hypothetical protein compare
AO353_11920 +0.4 1.4 hypothetical protein compare
AO353_22510 +0.4 1.6 hypothetical protein compare
AO353_08315 +0.4 2.3 multidrug transporter compare
AO353_12670 +0.4 1.9 glycosyl transferase compare
AO353_19195 +0.4 1.8 response regulator compare
AO353_26415 +0.4 1.9 hypothetical protein compare
AO353_15665 +0.4 1.8 chemotaxis protein CheY compare
AO353_09570 +0.4 2.6 type VI secretion protein ImpA compare
AO353_11340 +0.4 0.9 MarR family transcriptional regulator compare
AO353_05725 +0.4 2.2 tmRNA compare
AO353_07755 +0.4 2.0 betainyl-CoA thiolase (EC 3.1.2.-) (from data) compare
AO353_19070 +0.4 1.5 hypothetical protein compare
AO353_03130 +0.4 1.4 hypothetical protein compare
AO353_22150 +0.4 1.2 iron transporter compare
AO353_02300 +0.4 1.2 MarR family transcriptional regulator compare
AO353_07770 +0.4 2.1 AraC family transcriptional regulator compare
AO353_05535 +0.4 1.5 tRNA-Thr compare
AO353_29000 +0.4 1.0 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_09885 +0.4 0.7 transcriptional regulator PhoU compare
AO353_23425 +0.4 1.6 3-demethylubiquinone-9 3-methyltransferase compare
AO353_01055 +0.4 3.4 AraC family transcriptional regulator compare
AO353_09010 +0.4 1.6 hypothetical protein compare
AO353_21400 +0.4 1.1 conjugal transfer protein TraR compare
AO353_17365 +0.4 1.3 hypothetical protein compare
AO353_02920 +0.4 1.5 serine recombinase compare
AO353_25660 +0.4 1.6 ABC transporter substrate-binding protein compare
AO353_25845 +0.4 1.0 GNAT family acetyltransferase compare
AO353_15280 +0.4 1.8 hypothetical protein compare
AO353_13670 +0.4 1.6 ribosomal protein L11 methyltransferase compare
AO353_24870 +0.4 1.8 hypothetical protein compare
AO353_13130 +0.4 1.3 N-acetylmuramoyl-L-alanine amidase compare
AO353_20390 +0.4 2.0 rhodanese compare
AO353_11780 +0.4 1.3 hypothetical protein compare
AO353_17460 +0.4 1.4 hypothetical protein compare
AO353_19775 +0.4 1.5 transcriptional regulator compare
AO353_12315 +0.4 3.2 glucosyltransferase MdoH compare
AO353_21425 +0.4 1.7 hypothetical protein compare
AO353_17730 +0.4 1.8 hypothetical protein compare
AO353_00385 +0.4 1.8 glycerophosphodiester phosphodiesterase compare
AO353_24855 +0.4 2.2 aldehyde dehydrogenase compare
AO353_12950 +0.4 2.4 polymerase compare
AO353_27040 +0.4 2.1 molybdenum ABC transporter ATP-binding protein compare
AO353_27335 +0.4 1.0 hypothetical protein compare
AO353_18500 +0.4 0.8 chemotaxis protein CheY compare
AO353_14915 +0.4 1.1 (2Fe-2S)-binding protein compare
AO353_20790 +0.4 1.5 penicillin-binding protein activator LpoB compare
AO353_11285 +0.4 3.3 hypothetical protein compare
AO353_16980 +0.4 1.1 isochorismatase compare
AO353_19045 +0.4 2.2 2-dehydropantoate 2-reductase compare
AO353_11775 +0.4 2.2 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_19015 +0.4 3.0 hypothetical protein compare
AO353_00255 +0.4 1.4 hypothetical protein compare
AO353_06540 +0.4 1.0 hypothetical protein compare
AO353_02330 +0.4 1.0 allantoicase compare
AO353_12310 +0.4 2.8 glucan biosynthesis protein G compare
AO353_08825 +0.4 2.3 calcium transporter ChaC compare
AO353_15130 +0.4 2.0 hypothetical protein compare
AO353_17720 +0.4 1.8 ABC transporter substrate-binding protein compare
AO353_04580 +0.4 1.4 GIY-YIG nuclease compare
AO353_02460 +0.4 1.9 hypothetical protein compare
AO353_21825 +0.3 2.0 GNAT family acetyltransferase compare
AO353_00540 +0.3 1.0 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_29005 +0.3 1.1 hypothetical protein compare
AO353_07140 +0.3 3.0 peptidase M23 compare
AO353_27280 +0.3 1.8 phage tail protein compare
AO353_23415 +0.3 1.8 lysine transporter LysE compare
AO353_08525 +0.3 1.3 purine nucleoside phosphorylase compare
AO353_29065 +0.3 1.8 reactive intermediate/imine deaminase compare
AO353_25795 +0.3 2.3 peptidase C39 compare
AO353_17100 +0.3 0.9 hypothetical protein compare
AO353_03450 +0.3 1.7 heme oxygenase compare
AO353_23000 +0.3 2.2 hypothetical protein compare
AO353_12565 +0.3 0.9 type II secretion system protein GspH compare
AO353_01065 +0.3 2.1 acetyl-CoA acetyltransferase compare
AO353_09625 +0.3 2.0 type VI secretion protein ImpA compare
AO353_06425 +0.3 1.3 lipoyl synthase compare
AO353_22620 +0.3 1.6 hypothetical protein compare
AO353_12665 +0.3 0.7 glycosyl transferase compare
AO353_09235 +0.3 2.2 phosphoglucomutase compare
AO353_12270 +0.3 1.2 histidine ammonia-lyase compare
AO353_13710 +0.3 2.3 NUDIX hydrolase compare
AO353_28400 +0.3 2.0 hypothetical protein compare
AO353_06345 +0.3 3.0 histidine kinase compare
AO353_19210 +0.3 1.8 hypothetical protein compare
AO353_16895 +0.3 2.9 hypothetical protein compare
AO353_14930 +0.3 1.0 GntR family transcriptional regulator compare
AO353_21445 +0.3 1.2 cation:proton antiporter compare
AO353_16430 +0.3 2.0 cysteine sulfinate desulfinase compare
AO353_15645 +0.3 1.0 hypothetical protein compare
AO353_00510 +0.3 1.6 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_04865 +0.3 2.1 hypothetical protein compare
AO353_25030 +0.3 1.7 recombinase compare
AO353_13095 +0.3 1.1 flagellar motor protein MotB compare
AO353_07960 +0.3 1.9 ArsR family transcriptional regulator compare
AO353_22370 +0.3 1.3 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_02235 +0.3 1.6 acireductone dioxygenase compare
AO353_22180 +0.3 1.7 2-oxobutyrate oxidase compare
AO353_04915 +0.3 2.2 RNA polymerase subunit sigma-24 compare
AO353_04190 +0.3 0.7 glycerol-3-phosphate dehydrogenase compare
AO353_28970 +0.3 1.7 hypothetical protein compare
AO353_09745 +0.3 0.5 hypothetical protein compare
AO353_14795 +0.3 1.4 molybdopterin-synthase adenylyltransferase compare
AO353_02630 +0.3 1.2 5,6-dimethylbenzimidazole synthase compare
AO353_23790 +0.3 0.6 metal-binding protein compare
AO353_15610 +0.3 1.4 chemotaxis protein CheY compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in carbon source experiments

For carbon source D-Glucose across organisms