Experiment set1IT068 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; ShewMM media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -6.8 -4.7 3-isopropylmalate dehydratase small subunit compare
EX31_RS13275 -6.6 -7.8 diaminopimelate decarboxylase compare
EX31_RS12510 -6.1 -15.8 FAD-dependent oxidoreductase compare
EX31_RS15020 -6.1 -14.7 ketol-acid reductoisomerase compare
EX31_RS12400 -5.8 -4.0 RNA polymerase factor sigma-54 compare
EX31_RS02530 -5.8 -4.0 ABC transporter ATP-binding protein compare
EX31_RS15005 -5.7 -15.7 dihydroxy-acid dehydratase compare
EX31_RS22625 -5.6 -3.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS14200 -5.6 -16.5 phosphoenolpyruvate carboxylase compare
EX31_RS12515 -5.5 -24.5 glutamate synthase large subunit compare
EX31_RS03935 -5.5 -9.2 threonine synthase compare
EX31_RS12785 -5.5 -11.7 aspartate carbamoyltransferase compare
EX31_RS03940 -5.5 -10.5 homoserine kinase compare
EX31_RS20975 -5.4 -5.3 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS13445 -5.4 -14.4 argininosuccinate synthase compare
EX31_RS14180 -5.4 -14.4 argininosuccinate lyase compare
EX31_RS04035 -5.4 -13.0 phosphoserine phosphatase compare
EX31_RS14190 -5.4 -12.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS03690 -5.3 -10.2 3-isopropylmalate dehydratase large subunit compare
EX31_RS14215 -5.3 -19.6 cystathionine gamma-synthase compare
EX31_RS03830 -5.2 -18.2 carbamoyl-phosphate synthase large subunit compare
EX31_RS14205 -5.2 -13.5 methylenetetrahydrofolate reductase compare
EX31_RS18530 -5.2 -13.0 leucine-responsive transcriptional regulator Lrp compare
EX31_RS03685 -5.2 -14.5 3-isopropylmalate dehydrogenase compare
EX31_RS12825 -5.1 -7.8 ornithine carbamoyltransferase compare
EX31_RS03945 -5.1 -24.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS23245 -5.1 -16.8 asparagine synthase B compare
EX31_RS13160 -5.0 -12.9 amino-acid N-acetyltransferase compare
EX31_RS11460 -5.0 -3.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS22695 -5.0 -8.9 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS20980 -5.0 -7.6 glutamate 5-kinase compare
EX31_RS03835 -4.9 -9.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS21895 -4.9 -17.8 phosphoribosylformylglycinamidine synthase compare
EX31_RS02515 -4.9 -3.4 PAS domain-containing protein compare
EX31_RS20495 -4.9 -9.9 outer membrane protein assembly factor BamB compare
EX31_RS22750 -4.9 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS14185 -4.9 -9.3 acetylglutamate kinase compare
EX31_RS09975 -4.8 -5.8 tryptophan synthase subunit beta compare
EX31_RS16860 -4.8 -20.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS23415 -4.8 -7.4 citrate synthase compare
EX31_RS14500 -4.8 -12.8 orotate phosphoribosyltransferase compare
EX31_RS21470 -4.8 -10.6 phosphoglycerate dehydrogenase compare
EX31_RS09980 -4.7 -5.6 tryptophan synthase subunit alpha compare
EX31_RS02520 -4.7 -4.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS05785 -4.7 -4.6 superoxide dismutase [Mn] compare
EX31_RS09855 -4.6 -4.5 orotidine-5'-phosphate decarboxylase compare
EX31_RS11735 -4.6 -10.7 homoserine O-succinyltransferase compare
EX31_RS24385 -4.5 -3.1 dihydroorotase compare
EX31_RS07895 -4.4 -12.8 phosphoadenylyl-sulfate reductase compare
EX31_RS02690 -4.4 -6.8 pyrroline-5-carboxylate reductase compare
EX31_RS15880 -4.4 -10.5 nitrogen regulation protein NR(I) compare
EX31_RS16855 -4.4 -15.9 phosphoribosylamine--glycine ligase compare
EX31_RS11440 -4.3 -7.2 histidinol dehydrogenase compare
EX31_RS09970 -4.3 -7.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS08745 -4.3 -2.9 50S ribosomal protein L9 compare
EX31_RS18540 -4.3 -3.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS11465 -4.3 -6.5 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS19570 -4.3 -14.9 amidophosphoribosyltransferase compare
EX31_RS09955 -4.1 -7.9 anthranilate synthase component 1 compare
EX31_RS20175 -4.1 -9.9 cysteine synthase A compare
EX31_RS14310 -4.1 -2.8 6-phosphofructokinase compare
EX31_RS11445 -4.0 -7.7 histidinol-phosphate transaminase compare
EX31_RS07870 -4.0 -10.7 adenylyl-sulfate kinase compare
EX31_RS03680 -4.0 -15.6 2-isopropylmalate synthase compare
EX31_RS11450 -4.0 -6.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS08720 -4.0 -16.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS09965 -3.9 -7.9 anthranilate phosphoribosyltransferase compare
EX31_RS22620 -3.9 -7.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS07585 -3.9 -10.7 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS22250 -3.9 -5.3 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS07955 -3.9 -19.5 GTP diphosphokinase compare
EX31_RS18095 -3.9 -6.5 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS20450 -3.9 -7.9 IMP dehydrogenase compare
EX31_RS03250 -3.9 -10.6 RNA polymerase-binding protein DksA compare
EX31_RS11455 -3.8 -5.8 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS09890 -3.8 -12.6 HTH-type transcriptional regulator CysB compare
EX31_RS09960 -3.8 -6.3 glutamine amidotransferase compare
EX31_RS18255 -3.7 -2.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS11470 -3.7 -4.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS04390 -3.6 -4.5 DNA polymerase III subunit chi compare
EX31_RS15870 -3.6 -2.5 glutamate--ammonia ligase compare
EX31_RS25370 -3.5 -12.8 HTH-type transcriptional regulator MetR compare
EX31_RS22245 -3.5 -4.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS23490 -3.5 -3.4 cell envelope integrity protein TolA compare
EX31_RS20735 -3.4 -5.2 exodeoxyribonuclease V subunit beta compare
EX31_RS18525 -3.4 -4.6 DNA translocase FtsK compare
EX31_RS07905 -3.4 -18.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07590 -3.4 -2.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS15875 -3.2 -14.2 nitrogen regulation protein NR(II) compare
EX31_RS23440 -3.0 -3.5 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS07900 -2.9 -15.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS06060 -2.8 -5.9 phosphate ABC transporter permease PstA compare
EX31_RS06055 -2.8 -4.2 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS14335 -2.7 -2.6 serine O-acetyltransferase compare
EX31_RS07880 -2.6 -16.1 sulfate adenylyltransferase subunit CysD compare
EX31_RS07875 -2.6 -17.6 sulfate adenylyltransferase subunit CysN compare
EX31_RS04630 -2.5 -13.6 aspartate aminotransferase family protein compare
EX31_RS14620 -2.5 -2.9 SCP2 domain-containing protein compare
EX31_RS12875 -2.4 -3.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS23495 -2.3 -8.1 Tol-Pal system protein TolB compare
EX31_RS23500 -2.3 -5.3 peptidoglycan-associated lipoprotein Pal compare
EX31_RS21190 -2.3 -4.3 ribonuclease HI compare
EX31_RS04925 -2.2 -4.2 Fe-S biogenesis protein NfuA compare
EX31_RS03480 -2.2 -3.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS14340 -2.2 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS03775 -2.1 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS21850 -2.1 -2.8 pyridoxine 5'-phosphate synthase compare
EX31_RS11435 -2.1 -6.2 ATP phosphoribosyltransferase compare
EX31_RS15010 -2.1 -8.8 threonine ammonia-lyase, biosynthetic compare
EX31_RS07560 -2.1 -16.2 ATP-dependent chaperone ClpB compare
EX31_RS06150 -2.1 -13.2 transcriptional regulator AsnC compare
EX31_RS11815 -2.1 -11.0 glucose-6-phosphate isomerase compare
EX31_RS03790 -2.0 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS07595 -2.0 -8.1 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS11540 -2.0 -4.6 dCTP deaminase compare
EX31_RS23485 -1.9 -2.6 colicin uptake protein TolR compare
EX31_RS07785 -1.9 -1.3 carbon storage regulator CsrA compare
EX31_RS22430 -1.8 -2.4 hemolysin expression modulator Hha compare
EX31_RS23480 -1.8 -4.5 Tol-Pal system protein TolQ compare
EX31_RS11500 -1.8 -2.6 glycosyltransferase family 2 protein compare
EX31_RS25410 -1.7 -1.2 transposase compare
EX31_RS04105 -1.7 -2.5 helix-turn-helix domain-containing protein compare
EX31_RS09995 -1.7 -2.9 YkgJ family cysteine cluster protein compare
EX31_RS25025 -1.7 -2.2 DUF1272 domain-containing protein compare
EX31_RS19205 -1.6 -3.6 50S ribosomal protein L25 compare
EX31_RS04725 -1.6 -4.0 shikimate kinase AroK compare
EX31_RS02525 -1.6 -6.2 ABC transporter permease compare
EX31_RS10115 -1.6 -8.3 formyltetrahydrofolate deformylase compare
EX31_RS06070 -1.6 -7.4 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS13815 -1.6 -1.4 ribonuclease T compare
EX31_RS25365 -1.5 -1.4 50S ribosomal protein L31 compare
EX31_RS11675 -1.5 -2.4 Holliday junction branch migration protein RuvA compare
EX31_RS21400 -1.5 -5.3 transketolase compare
EX31_RS17835 -1.5 -2.7 PTS transporter subunit EIIB compare
EX31_RS03890 -1.4 -3.8 Na+/H+ antiporter NhaA compare
EX31_RS19610 -1.4 -5.8 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS15000 -1.4 -8.3 branched-chain amino acid transaminase compare
EX31_RS07130 -1.4 -2.8 ABC transporter substrate-binding protein compare
EX31_RS19655 -1.4 -4.8 beta-ketoacyl-ACP synthase I compare
EX31_RS26010 -1.3 -2.3 YnhF family membrane protein compare
EX31_RS16625 -1.3 -1.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS01615 -1.3 -2.2 DNA breaking-rejoining protein compare
EX31_RS25125 -1.3 -2.7 thr operon leader peptide compare
EX31_RS21805 -1.3 -2.1 anti-sigma-E factor RseA compare
EX31_RS11690 -1.2 -2.4 dihydroneopterin triphosphate diphosphatase compare
EX31_RS06140 -1.2 -7.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS19600 -1.2 -5.5 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS06340 -1.2 -1.2 thiol peroxidase compare
EX31_RS25945 -1.2 -2.4 hypothetical protein compare
EX31_RS20210 -1.2 -5.1 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS10030 -1.2 -1.6 YciY family protein compare
EX31_RS22740 -1.2 -5.9 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS06065 -1.2 -5.6 phosphate ABC transporter permease PstC compare
EX31_RS21570 -1.2 -3.4 hypothetical protein compare
EX31_RS07185 -1.2 -4.1 mannosyl-3-phosphoglycerate phosphatase-related protein compare
EX31_RS07380 -1.2 -1.9 redox-regulated ATPase YchF compare
EX31_RS25910 -1.2 -1.3 hypothetical protein compare
EX31_RS19505 -1.2 -2.0 PTS sugar transporter subunit IIB compare
EX31_RS12175 -1.2 -3.3 DNA-binding transcriptional regulator Fis compare
EX31_RS25375 -1.2 -2.5 ilv operon leader peptide compare
EX31_RS23125 -1.2 -2.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS14345 -1.1 -2.4 protein-export chaperone SecB compare
EX31_RS03570 -1.1 -1.8 DUF721 domain-containing protein compare
EX31_RS03400 -1.1 -4.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS13045 -1.1 -7.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS06825 -1.1 -2.6 amino acid ABC transporter ATP-binding protein compare
EX31_RS09460 -1.1 -4.7 flagellar filament capping protein FliD compare
EX31_RS17985 -1.1 -2.6 acylphosphatase compare
EX31_RS09895 -1.1 -2.2 type I DNA topoisomerase compare
EX31_RS24420 -1.1 -5.9 phosphate acyltransferase PlsX compare
EX31_RS08130 -1.1 -1.2 accessory factor UbiK family protein compare
EX31_RS11625 -1.1 -0.9 hypothetical protein compare
EX31_RS06800 -1.0 -2.2 ABC transporter permease compare
EX31_RS13480 -1.0 -3.4 site-specific tyrosine recombinase XerD compare
EX31_RS20530 -1.0 -4.7 nucleoside-diphosphate kinase compare
EX31_RS05145 -1.0 -5.4 inorganic phosphate transporter PitA compare
EX31_RS25340 -1.0 -3.1 hypothetical protein compare
EX31_RS19480 -1.0 -4.5 acetate kinase compare
EX31_RS13925 -1.0 -7.2 FAD-binding oxidoreductase compare
EX31_RS10245 -1.0 -2.9 D-alanyl-D-alanine dipeptidase compare
EX31_RS24380 -1.0 -1.8 DNA damage-inducible protein I compare
EX31_RS11105 -1.0 -2.7 cytosine deaminase compare
EX31_RS07685 -1.0 -2.2 phage tail assembly protein compare
EX31_RS01325 -1.0 -2.2 hypothetical protein compare
EX31_RS06000 -1.0 -3.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS20180 -1.0 -2.4 phosphocarrier protein Hpr compare
EX31_RS09550 -1.0 -1.3 flagellar assembly protein FliH compare
EX31_RS25690 -1.0 -1.6 tyrosine-type recombinase/integrase compare
EX31_RS15540 -0.9 -1.5 SDR family oxidoreductase compare
EX31_RS11760 -0.9 -8.5 methionine synthase compare
EX31_RS15165 -0.9 -2.7 tyrosine recombinase XerC compare
EX31_RS10930 -0.9 -2.1 protein DsrB compare
EX31_RS15015 -0.9 -2.2 HTH-type transcriptional activator IlvY compare
EX31_RS22690 -0.9 -4.9 phosphoribosylglycinamide formyltransferase compare
EX31_RS18785 -0.9 -3.5 DUF2384 domain-containing protein compare
EX31_RS24880 -0.9 -7.8 carboxy terminal-processing peptidase compare
EX31_RS03085 -0.9 -3.4 hypothetical protein compare
EX31_RS07885 -0.9 -5.1 uroporphyrinogen-III C-methyltransferase compare
EX31_RS09915 -0.9 -4.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
EX31_RS14610 -0.9 -1.6 twin-arginine translocase subunit TatE compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms