Experiment set1IT068 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS17025 +0.7 2.1 hypothetical protein compare
CA265_RS22450 +0.7 2.5 GntR family transcriptional regulator compare
CA265_RS14125 +0.7 1.9 hypothetical protein compare
CA265_RS23120 +0.7 2.4 hypothetical protein compare
CA265_RS07755 +0.7 1.5 hypothetical protein compare
CA265_RS17220 +0.7 3.7 NAD(P)H-dependent oxidoreductase compare
CA265_RS06595 +0.7 1.4 Arc family DNA binding domain-containing protein compare
CA265_RS16105 +0.6 2.0 hypothetical protein compare
CA265_RS12800 +0.6 3.0 NAD(P)H-dependent oxidoreductase compare
CA265_RS17940 +0.6 2.8 hypothetical protein compare
CA265_RS23045 +0.6 1.4 cold-shock protein compare
CA265_RS00490 +0.6 1.5 hypothetical protein compare
CA265_RS20440 +0.6 2.6 hypothetical protein compare
CA265_RS12665 +0.5 1.2 cold-shock protein compare
CA265_RS16205 +0.5 2.9 transcriptional regulator compare
CA265_RS24355 +0.5 2.3 transcriptional regulator compare
CA265_RS16995 +0.5 2.4 hypothetical protein compare
CA265_RS15435 +0.5 3.1 glycine transporter (from data) compare
CA265_RS19140 +0.5 1.4 tRNA-Ile compare
CA265_RS25150 +0.5 1.9 hypothetical protein compare
CA265_RS25030 +0.5 1.7 hypothetical protein compare
CA265_RS12780 +0.5 0.9 hypothetical protein compare
CA265_RS03835 +0.5 1.4 hypothetical protein compare
CA265_RS20320 +0.5 4.4 hypothetical protein compare
CA265_RS02425 +0.5 1.2 GTP cyclohydrolase compare
CA265_RS19170 +0.5 2.9 chromosome segregation protein ScpA compare
CA265_RS21030 +0.5 2.8 hypothetical protein compare
CA265_RS18530 +0.5 1.4 aspartate aminotransferase family protein compare
CA265_RS16585 +0.5 1.7 hypothetical protein compare
CA265_RS09920 +0.5 2.3 protein tyrosine phosphatase compare
CA265_RS14825 +0.5 1.1 outer membrane protein assembly factor BamD compare
CA265_RS23145 +0.5 1.1 hypothetical protein compare
CA265_RS22475 +0.4 2.5 hypothetical protein compare
CA265_RS10480 +0.4 1.5 hypothetical protein compare
CA265_RS16615 +0.4 1.3 hypothetical protein compare
CA265_RS19465 +0.4 1.5 protein tyrosine phosphatase compare
CA265_RS20525 +0.4 0.9 hypothetical protein compare
CA265_RS19545 +0.4 2.6 protease compare
CA265_RS24910 +0.4 1.8 GNAT family N-acetyltransferase compare
CA265_RS22165 +0.4 0.3 hypothetical protein compare
CA265_RS20315 +0.4 3.5 hypothetical protein compare
CA265_RS15280 +0.4 2.8 glycine C-acetyltransferase compare
CA265_RS20655 +0.4 1.6 transcriptional regulator compare
CA265_RS15690 +0.4 2.4 NADPH-dependent FMN reductase compare
CA265_RS22310 +0.4 2.0 superoxide dismutase compare
CA265_RS03385 +0.4 1.7 hypothetical protein compare
CA265_RS23835 +0.4 2.0 hypothetical protein compare
CA265_RS06030 +0.4 1.1 SelT/selW/selH selenoprotein compare
CA265_RS19620 +0.4 2.3 hypothetical protein compare
CA265_RS01975 +0.4 1.0 cell division protein compare
CA265_RS12645 +0.4 2.3 molybdopterin converting factor compare
CA265_RS18775 +0.4 2.1 hypothetical protein compare
CA265_RS12280 +0.4 1.5 hypothetical protein compare
CA265_RS15815 +0.4 1.4 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS21320 +0.4 1.5 hypothetical protein compare
CA265_RS08665 +0.4 0.9 tRNA-Lys compare
CA265_RS18275 +0.4 1.5 pyrophosphatase compare
CA265_RS10000 +0.4 1.2 nitrite reductase small subunit compare
CA265_RS25345 +0.4 1.4 hypothetical protein compare
CA265_RS22800 +0.4 2.5 glycosyl transferase compare
CA265_RS14615 +0.4 1.8 hypothetical protein compare
CA265_RS01560 +0.4 0.8 circadian clock protein KaiB compare
CA265_RS01200 +0.4 2.2 hypothetical protein compare
CA265_RS12745 +0.4 1.7 NUDIX hydrolase compare
CA265_RS13610 +0.4 2.7 hypothetical protein compare
CA265_RS20925 +0.4 2.1 hypothetical protein compare
CA265_RS09695 +0.4 1.6 hypothetical protein compare
CA265_RS22720 +0.4 1.5 hypothetical protein compare
CA265_RS01225 +0.4 2.0 hypothetical protein compare
CA265_RS24360 +0.4 2.0 ATPase compare
CA265_RS10400 +0.4 1.7 histone H1 compare
CA265_RS12505 +0.4 0.9 hypothetical protein compare
CA265_RS05845 +0.4 2.2 hypothetical protein compare
CA265_RS16195 +0.4 2.4 hypothetical protein compare
CA265_RS19685 +0.4 1.7 hypothetical protein compare
CA265_RS09165 +0.4 2.2 AAA family ATPase compare
CA265_RS09280 +0.4 1.8 diguanylate cyclase compare
CA265_RS11920 +0.3 0.7 histone H1 compare
CA265_RS06655 +0.3 2.0 hypothetical protein compare
CA265_RS25375 +0.3 1.8 hypothetical protein compare
CA265_RS13215 +0.3 2.3 hypothetical protein compare
CA265_RS24955 +0.3 1.5 methyltransferase type 11 compare
CA265_RS17560 +0.3 2.4 peptidylprolyl isomerase compare
CA265_RS15175 +0.3 1.6 thioredoxin-dependent thiol peroxidase compare
CA265_RS18525 +0.3 2.1 four helix bundle protein compare
CA265_RS18085 +0.3 1.3 hypothetical protein compare
CA265_RS24385 +0.3 0.9 GNAT family N-acetyltransferase compare
CA265_RS14475 +0.3 1.6 glutathione peroxidase compare
CA265_RS09570 +0.3 1.4 RNA methyltransferase compare
CA265_RS23945 +0.3 1.2 hypothetical protein compare
CA265_RS22530 +0.3 2.2 RDD family protein compare
CA265_RS15795 +0.3 2.3 dihydroxy-acid dehydratase compare
CA265_RS22745 +0.3 1.4 hypothetical protein compare
CA265_RS25360 +0.3 1.9 phosphoribosyltransferase compare
CA265_RS00940 +0.3 1.4 hypothetical protein compare
CA265_RS04445 +0.3 1.0 hypothetical protein compare
CA265_RS08060 +0.3 1.0 hypothetical protein compare
CA265_RS16005 +0.3 1.4 hypothetical protein compare
CA265_RS22415 +0.3 2.0 hypothetical protein compare
CA265_RS23390 +0.3 1.5 alkyl hydroperoxide reductase compare
CA265_RS03235 +0.3 1.8 hypothetical protein compare
CA265_RS17720 +0.3 2.5 hypothetical protein compare
CA265_RS08935 +0.3 1.8 (2Fe-2S)-binding protein compare
CA265_RS05495 +0.3 1.5 hypothetical protein compare
CA265_RS09640 +0.3 0.8 ATPase compare
CA265_RS08560 +0.3 2.0 ABC transporter substrate-binding protein compare
CA265_RS19910 +0.3 1.8 GDSL family lipase compare
CA265_RS08510 +0.3 2.1 oxidoreductase compare
CA265_RS03595 +0.3 1.5 hydrolase compare
CA265_RS20355 +0.3 0.9 hypothetical protein compare
CA265_RS19815 +0.3 2.1 RlmI/RlmK family 23S rRNA methyltransferase compare
CA265_RS19760 +0.3 0.7 hypothetical protein compare
CA265_RS03450 +0.3 1.7 hypothetical protein compare
CA265_RS11995 +0.3 1.5 RNA polymerase subunit sigma compare
CA265_RS10390 +0.3 1.2 hypothetical protein compare
CA265_RS25060 +0.3 1.2 hypothetical protein compare
CA265_RS14640 +0.3 0.7 UDP-glucose 4-epimerase compare
CA265_RS25175 +0.3 1.7 EamA family transporter compare
CA265_RS02230 +0.3 1.7 hypothetical protein compare
CA265_RS04425 +0.3 2.0 histidine phosphotransferase compare
CA265_RS19690 +0.3 1.5 hypothetical protein compare
CA265_RS22455 +0.3 1.7 hypothetical protein compare
CA265_RS22600 +0.3 1.7 hypothetical protein compare
CA265_RS19645 +0.3 1.8 GNAT family N-acetyltransferase compare
CA265_RS25435 +0.3 1.3 hypothetical protein compare
CA265_RS06180 +0.3 1.6 hypothetical protein compare
CA265_RS24435 +0.3 2.1 hypothetical protein compare
CA265_RS04465 +0.3 1.2 PspC family transcriptional regulator compare
CA265_RS02075 +0.3 2.1 hypothetical protein compare
CA265_RS18265 +0.3 1.3 hypothetical protein compare
CA265_RS10570 +0.3 1.8 hypothetical protein compare
CA265_RS07440 +0.3 1.9 hypothetical protein compare
CA265_RS21585 +0.3 1.7 cyclic nucleotide-binding protein compare
CA265_RS11010 +0.3 1.6 hypothetical protein compare
CA265_RS21435 +0.3 1.2 hypothetical protein compare
CA265_RS13555 +0.3 1.3 hypothetical protein compare
CA265_RS20365 +0.3 0.8 hypothetical protein compare
CA265_RS22915 +0.3 1.3 hypothetical protein compare
CA265_RS22155 +0.3 1.0 hypothetical protein compare
CA265_RS22435 +0.3 1.3 hypothetical protein compare
CA265_RS20880 +0.3 1.4 hypothetical protein compare
CA265_RS20550 +0.3 1.1 hypothetical protein compare
CA265_RS19455 +0.3 2.2 hypothetical protein compare
CA265_RS16950 +0.3 1.7 hypothetical protein compare
CA265_RS24605 +0.3 0.5 hypothetical protein compare
CA265_RS03155 +0.3 1.7 hypothetical protein compare
CA265_RS19350 +0.3 1.9 ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member compare
CA265_RS21775 +0.3 1.4 transporter compare
CA265_RS12705 +0.3 1.2 hypothetical protein compare
CA265_RS20775 +0.3 1.2 hypothetical protein compare
CA265_RS05065 +0.3 1.8 hypothetical protein compare
CA265_RS11800 +0.3 2.0 hypothetical protein compare
CA265_RS15445 +0.3 1.7 hypothetical protein compare
CA265_RS16295 +0.3 1.9 LacI family transcriptional regulator compare
CA265_RS12075 +0.3 0.9 hypothetical protein compare
CA265_RS21420 +0.3 1.3 hypothetical protein compare
CA265_RS04340 +0.3 1.1 hypothetical protein compare
CA265_RS10385 +0.3 1.5 hypothetical protein compare
CA265_RS25160 +0.3 1.6 glycosyl transferase family 2 compare
CA265_RS10150 +0.3 1.2 cysteine synthase B compare
CA265_RS22750 +0.3 1.2 hypothetical protein compare
CA265_RS01950 +0.3 1.0 hypothetical protein compare
CA265_RS25215 +0.3 1.0 MBL fold hydrolase compare
CA265_RS05630 +0.3 1.7 hypothetical protein compare
CA265_RS20430 +0.3 2.3 hypothetical protein compare
CA265_RS10435 +0.3 1.4 RNA-binding protein compare
CA265_RS07455 +0.3 0.7 hypothetical protein compare
CA265_RS21330 +0.3 1.6 TetR family transcriptional regulator compare
CA265_RS16715 +0.3 0.9 hypothetical protein compare
CA265_RS14335 +0.3 1.8 alcohol dehydrogenase compare
CA265_RS01145 +0.3 1.8 arylesterase compare
CA265_RS17060 +0.3 1.8 adenylyl-sulfate kinase compare
CA265_RS20730 +0.3 1.2 hypothetical protein compare
CA265_RS22490 +0.3 1.2 MarR family transcriptional regulator compare
CA265_RS14510 +0.3 1.1 hypothetical protein compare
CA265_RS03815 +0.3 1.5 AraC family transcriptional regulator compare
CA265_RS06365 +0.3 2.1 hypothetical protein compare
CA265_RS09915 +0.3 1.4 short-chain dehydrogenase/reductase compare
CA265_RS14330 +0.3 1.8 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase compare
CA265_RS14085 +0.3 1.6 hypothetical protein compare
CA265_RS22360 +0.3 2.0 hypothetical protein compare
CA265_RS06430 +0.3 1.1 hypothetical protein compare
CA265_RS25305 +0.3 1.3 hypothetical protein compare
CA265_RS21940 +0.3 1.8 RagB/SusD family protein compare
CA265_RS03225 +0.3 1.3 hypothetical protein compare
CA265_RS02795 +0.3 0.6 hypothetical protein compare
CA265_RS20095 +0.3 1.1 NADH oxidase compare
CA265_RS18150 +0.3 1.8 hypothetical protein compare
CA265_RS19445 +0.3 1.3 hypothetical protein compare
CA265_RS09315 +0.3 1.7 hypothetical protein compare
CA265_RS05060 +0.3 1.6 hypothetical protein compare
CA265_RS25200 +0.3 1.2 hypothetical protein compare
CA265_RS01055 +0.2 1.1 hypothetical protein compare
CA265_RS17685 +0.2 1.5 hypothetical protein compare
CA265_RS05075 +0.2 0.5 hypothetical protein compare
CA265_RS01770 +0.2 1.1 hypothetical protein compare
CA265_RS19670 +0.2 1.4 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
CA265_RS21390 +0.2 1.3 metal-dependent hydrolase compare
CA265_RS23215 +0.2 1.2 hypothetical protein compare
CA265_RS00010 +0.2 1.9 DNA mismatch repair protein MutT compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in r2a experiments