Experiment set1IT068 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations

200 most important genes:

  gene name fitness t score description  
MMP_RS01985 -11.5 -6.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS06680 -11.2 -7.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06350 -11.0 -6.6 HesA/MoeB/ThiF family protein compare
MMP_RS01175 -10.8 -6.2 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06700 -10.7 -7.4 hypothetical protein compare
MMP_RS06685 -10.6 -7.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS04615 -10.5 -4.9 PDGLE domain-containing protein compare
MMP_RS05515 -10.4 -7.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06355 -10.4 -4.2 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS02355 -10.4 -4.1 30S ribosomal protein S27ae compare
MMP_RS05285 -10.2 -10.0 MMPL family transporter compare
MMP_RS08840 -10.2 -9.9 class I SAM-dependent methyltransferase compare
MMP_RS01445 -10.2 -8.4 hypothetical protein compare
MMP_RS08860 -10.1 -6.2 MinD/ParA family protein compare
MMP_RS07445 -10.1 -7.0 helix-turn-helix domain-containing protein compare
MMP_RS01500 -10.0 -4.0 CBS domain-containing protein compare
MMP_RS05280 -10.0 -9.7 COG1361 S-layer family protein compare
MMP_RS06340 -9.7 -6.7 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01220 -9.7 -6.7 hypothetical protein compare
MMP_RS07635 -9.5 -6.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS02135 -9.4 -6.2 DUF5612 domain-containing protein compare
MMP_RS04605 -9.4 -5.3 cobalt ECF transporter T component CbiQ compare
MMP_RS01225 -9.3 -6.4 DUF5379 domain-containing protein compare
MMP_RS06105 -9.3 -6.4 hydrogenase maturation peptidase HycI compare
MMP_RS03390 -9.1 -6.3 malate dehydrogenase compare
MMP_RS08605 -9.0 -7.4 flagellar protein E compare
MMP_RS06295 -9.0 -6.2 methanogenesis marker 14 protein compare
MMP_RS07845 -8.9 -3.6 LL-diaminopimelate aminotransferase compare
MMP_RS06130 -8.8 -4.9 peptidylprolyl isomerase compare
MMP_RS07600 -8.7 -4.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS03580 -8.7 -5.0 signal recognition particle-docking protein FtsY compare
MMP_RS00685 -8.7 -5.7 2-phospho-L-lactate guanylyltransferase compare
MMP_RS03110 -8.6 -5.9 glycosyltransferase family 2 protein compare
MMP_RS02240 -8.5 -4.9 methanogenesis marker 7 protein compare
MMP_RS02195 -8.5 -5.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS03025 -8.5 -5.9 molybdenum cofactor guanylyltransferase compare
MMP_RS04090 -8.5 -4.4 hypothetical protein compare
MMP_RS06285 -8.4 -3.9 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01380 -8.4 -5.7 PHP domain-containing protein compare
MMP_RS04710 -8.4 -3.4 hypothetical protein compare
MMP_RS08210 -8.3 -3.9 phosphatidylglycerophosphatase A compare
MMP_RS08440 -8.3 -4.3 cell division protein SepF compare
MMP_RS02145 -8.3 -5.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS01795 -8.2 -3.3 methanogenesis marker 6 protein compare
MMP_RS01325 -8.2 -3.8 dihydroneopterin aldolase family protein compare
MMP_RS08435 -8.2 -3.8 Era-like GTP-binding protein compare
MMP_RS07605 -8.1 -4.3 diadenylate cyclase compare
MMP_RS01725 -8.1 -6.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS07200 -8.1 -5.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01610 -8.1 -5.0 hypothetical protein compare
MMP_RS06400 -8.1 -3.3 4Fe-4S binding protein compare
MMP_RS06670 -8.0 -5.5 glucose-6-phosphate isomerase compare
MMP_RS06020 -8.0 -5.5 archaeoflavoprotein AfpA compare
MMP_RS03400 -8.0 -4.2 archease compare
MMP_RS01800 -7.9 -5.5 TIGR00303 family protein compare
MMP_RS03015 -7.9 -10.0 GTP 3' 8-cyclase MoaA compare
MMP_RS00335 -7.9 -5.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS06270 -7.9 -7.7 TIGR00300 family protein compare
MMP_RS00985 -7.8 -8.4 CDC48 family AAA ATPase compare
MMP_RS06625 -7.8 -3.6 DNA primase compare
MMP_RS04620 -7.7 -13.7 cobalt transporter CbiM compare
MMP_RS08745 -7.7 -5.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS08590 -7.7 -6.5 flagellin compare
MMP_RS06980 -7.6 -10.0 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS00110 -7.6 -4.3 hypothetical protein compare
MMP_RS06895 -7.6 -3.1 selenocysteine-specific translation elongation factor compare
MMP_RS06120 -7.6 -3.5 UPF0147 family protein compare
MMP_RS06475 -7.5 -5.2 FAD-dependent oxidoreductase compare
MMP_RS08445 -7.4 -5.5 DUF2099 family protein compare
MMP_RS00750 -7.4 -3.8 fumarate hydratase compare
MMP_RS04685 -7.4 -4.6 DUF126 domain-containing protein compare
MMP_RS06730 -7.4 -3.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS05925 -7.4 -5.3 small nuclear ribonucleoprotein compare
MMP_RS08650 -7.4 -5.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS02345 -7.4 -4.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06925 -7.3 -3.8 ribonuclease VapC4 compare
MMP_RS03600 -7.3 -3.8 triose-phosphate isomerase compare
MMP_RS07390 -7.3 -4.2 cell division protein FtsZ compare
MMP_RS04775 -7.3 -5.0 adenosylhomocysteinase compare
MMP_RS09020 -7.2 -2.9 hypothetical protein compare
MMP_RS07730 -7.2 -3.7 pyruvate synthase subunit beta compare
MMP_RS08715 -7.2 -3.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01905 -7.2 -22.9 glycosyltransferase compare
MMP_RS06715 -7.1 -15.7 cache domain-containing protein compare
MMP_RS01020 -7.1 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS08790 -7.1 -3.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS07435 -7.1 -3.3 GMP synthase subunit A compare
MMP_RS01925 -7.1 -16.5 DUF1616 domain-containing protein compare
MMP_RS01265 -7.1 -4.8 hypothetical protein compare
MMP_RS06345 -7.1 -10.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS07380 -7.1 -3.7 transcription elongation factor Spt5 compare
MMP_RS03700 -7.1 -11.8 sodium:proton antiporter compare
MMP_RS03155 -7.1 -10.9 precorrin-6A reductase compare
MMP_RS04585 -7.1 -13.3 AIR synthase related protein compare
MMP_RS02165 -7.0 -11.6 tRNA-dihydrouridine synthase compare
MMP_RS03640 -6.9 -6.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03445 -6.9 -1.6 methanogenesis marker 17 protein compare
MMP_RS05345 -6.9 -4.8 hypothetical protein compare
MMP_RS01900 -6.9 -26.2 hypothetical protein compare
MMP_RS03435 -6.8 -3.1 ketol-acid reductoisomerase compare
MMP_RS05845 -6.7 -3.2 tRNA-intron lyase compare
MMP_RS04780 -6.7 -4.4 ribonuclease P compare
MMP_RS05250 -6.7 -3.0 NFYB/HAP3 family transcription factor subunit compare
MMP_RS07630 -6.6 -2.7 ATP-binding cassette domain-containing protein compare
MMP_RS05640 -6.6 -9.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS08460 -6.5 -3.8 proteasome-activating nucleotidase compare
MMP_RS00320 -6.5 -2.2 class I SAM-dependent methyltransferase compare
MMP_RS06885 -6.5 -4.1 50S ribosome-binding GTPase compare
MMP_RS02280 -6.4 -1.5 DUF211 domain-containing protein compare
MMP_RS08720 -6.4 -3.0 4Fe-4S binding protein compare
MMP_RS03960 -6.3 -1.5 hypothetical protein compare
MMP_RS03315 -6.3 -2.5 ferrous iron transport protein A compare
MMP_RS00810 -6.3 -9.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS02800 -6.2 -3.9 nucleotidyltransferase domain-containing protein compare
MMP_RS07525 -6.2 -5.6 4Fe-4S binding protein compare
MMP_RS06230 -6.2 -3.8 helix-turn-helix domain-containing protein compare
MMP_RS00305 -6.2 -3.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS05290 -6.2 -9.9 TetR/AcrR family transcriptional regulator compare
MMP_RS00120 -6.2 -7.0 LysR family transcriptional regulator compare
MMP_RS01890 -6.1 -8.4 nucleotide sugar dehydrogenase compare
MMP_RS07350 -6.1 -3.2 preprotein translocase subunit Sec61beta compare
MMP_RS01955 -6.0 -4.1 hypothetical protein compare
MMP_RS07090 -5.9 -13.0 tRNA (adenine-N1)-methyltransferase compare
MMP_RS00300 -5.9 -1.4 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01005 -5.9 -1.9 riboflavin synthase compare
MMP_RS04870 -5.8 -5.6 TIGR02253 family HAD-type hydrolase compare
MMP_RS01755 -5.8 -1.9 DUF2097 domain-containing protein compare
MMP_RS03205 -5.7 -1.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08600 -5.7 -3.5 flagellar protein D compare
MMP_RS07075 -5.7 -5.2 phosphomannomutase/phosphoglucomutase compare
MMP_RS01875 -5.6 -16.3 N-acetyltransferase compare
MMP_RS01830 -5.6 -1.8 tRNA-Val compare
MMP_RS03475 -5.5 -1.3 hypothetical protein compare
MMP_RS05550 -5.5 -1.3 cation:proton antiporter compare
MMP_RS06705 -5.5 -7.5 formate/nitrite transporter family protein compare
MMP_RS08300 -5.4 -2.1 metal-sulfur cluster assembly factor compare
MMP_RS07755 -5.4 -1.8 DUF555 domain-containing protein compare
MMP_RS00515 -5.4 -1.8 DUF655 domain-containing protein compare
MMP_RS07750 -5.4 -6.7 DUF357 domain-containing protein compare
MMP_RS03140 -5.4 -14.5 hypothetical protein compare
MMP_RS03305 -5.3 -9.7 winged helix-turn-helix domain-containing protein compare
MMP_RS03035 -5.3 -6.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01385 -5.3 -1.2 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07545 -5.3 -1.7 HTH domain-containing protein compare
MMP_RS07330 -5.3 -21.1 membrane protein compare
MMP_RS07580 -5.2 -4.4 DUF356 domain-containing protein compare
MMP_RS00695 -5.2 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS08635 -5.2 -2.9 UbiA family prenyltransferase compare
MMP_RS07005 -5.1 -1.2 4Fe-4S binding protein compare
MMP_RS01335 -5.1 -3.5 prefoldin subunit beta compare
MMP_RS05920 -5.0 -1.2 50S ribosomal protein L37e compare
MMP_RS01895 -5.0 -20.3 flippase compare
MMP_RS01880 -5.0 -10.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06720 -5.0 -9.1 response regulator transcription factor compare
MMP_RS07820 -4.9 -6.9 UPF0104 family protein compare
MMP_RS03145 -4.9 -6.7 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS06630 -4.9 -1.6 UPF0058 family protein compare
MMP_RS02875 -4.9 -10.5 chorismate pyruvate-lyase family protein compare
MMP_RS06110 -4.8 -5.9 ATP-dependent protease LonB compare
MMP_RS01975 -4.8 -22.7 hypothetical protein compare
MMP_RS06315 -4.7 -1.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS02900 -4.7 -1.1 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS01250 -4.6 -11.4 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS01910 -4.6 -19.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS01700 -4.5 -1.5 dihydroxy-acid dehydratase compare
MMP_RS01915 -4.5 -20.3 DUF354 domain-containing protein compare
MMP_RS08070 -4.5 -7.0 DUF2096 domain-containing protein compare
MMP_RS08595 -4.5 -1.4 flagellar protein C compare
MMP_RS01840 -4.4 -15.6 TIGR00289 family protein compare
MMP_RS01885 -4.3 -10.9 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07735 -4.3 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04890 -4.2 -1.4 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07685 -4.2 -12.1 TIGR01212 family radical SAM protein compare
MMP_RS08320 -4.2 -8.0 molybdopterin molybdotransferase MoeA compare
MMP_RS05425 -4.1 -6.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS04875 -4.1 -7.8 energy-converting hydrogenase B subunit P compare
MMP_RS01970 -4.0 -20.8 TIGR04279 domain-containing protein compare
MMP_RS07960 -4.0 -8.7 sugar phosphate isomerase/epimerase compare
MMP_RS06575 -4.0 -3.0 fluoride efflux transporter CrcB compare
MMP_RS02340 -4.0 -3.5 DNA-directed RNA polymerase subunit E'' compare
MMP_RS06600 -3.9 -1.8 class III signal peptide-containing protein compare
MMP_RS07955 -3.9 -4.5 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS00895 -3.9 -6.2 hypothetical protein compare
MMP_RS05445 -3.8 -10.0 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS06035 -3.8 -10.8 glycosyltransferase family 2 protein compare
MMP_RS05555 -3.8 -2.3 DUF4040 domain-containing protein compare
MMP_RS02885 -3.8 -20.1 molybdopterin biosynthesis protein compare
MMP_RS06570 -3.7 -3.9 DUF190 domain-containing protein compare
MMP_RS07425 -3.7 -6.9 GTP-binding protein compare
MMP_RS08645 -3.5 -9.8 UPF0179 family protein compare
MMP_RS01920 -3.5 -19.9 glycosyltransferase family 2 protein compare
MMP_RS06855 -3.4 -16.4 hypothetical protein compare
MMP_RS06770 -3.4 -13.3 DHH family phosphoesterase compare
MMP_RS06940 -3.3 -2.9 polyprenyl diphosphate synthase compare
MMP_RS06215 -3.3 -5.5 30S ribosomal protein S6e compare
MMP_RS04695 -3.3 -12.4 selenide water dikinase SelD compare
MMP_RS07710 -3.3 -8.4 cell division protein FtsZ compare
MMP_RS05545 -3.3 -7.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00130 -3.3 -2.1 nickel-responsive transcriptional regulator NikR compare
MMP_RS07355 -3.3 -1.5 transcription factor S compare


Specific Phenotypes

For 3 genes in this experiment

For mixed community 1,3-Propanediol in Methanococcus maripaludis S2

For mixed community 1,3-Propanediol across organisms