Experiment set1IT068 for Pantoea sp. MT58

Compare to:

Cobalt chloride hexahydrate 10 uM, aerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI47_16390 +1.3 1.4 tRNA-Leu compare
IAI47_16420 +1.1 9.2 LacI family DNA-binding transcriptional regulator compare
IAI47_18415 +1.1 4.3 lipoprotein compare
IAI47_09550 +1.0 5.4 hypothetical protein compare
IAI47_17050 +1.0 5.9 preprotein translocase subunit SecG compare
IAI47_21450 +1.0 1.1 general stress protein compare
IAI47_05735 +1.0 4.0 hypothetical protein compare
IAI47_05520 +0.9 2.0 tRNA-Ala compare
IAI47_08705 +0.9 7.5 carboxy terminal-processing peptidase compare
IAI47_19295 +0.9 2.4 hypothetical protein compare
IAI47_06940 +0.9 1.1 tyrosine-protein kinase Wzc compare
IAI47_00735 +0.8 1.4 protein-export chaperone SecB compare
IAI47_12925 +0.8 3.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_06455 +0.8 4.0 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_02380 +0.8 2.0 DNA-binding transcriptional regulator Fis compare
IAI47_07490 +0.8 2.1 DNA-binding protein compare
IAI47_12545 +0.8 2.5 general stress protein compare
IAI47_07550 +0.8 0.8 tRNA-Asn compare
IAI47_08010 +0.8 5.2 flagella biosynthesis chaperone FliJ compare
IAI47_00730 +0.8 2.3 glutaredoxin 3 compare
IAI47_16520 +0.8 5.7 hypothetical protein compare
IAI47_16415 +0.7 5.7 nucleoside hydrolase compare
IAI47_02385 +0.7 5.1 tRNA dihydrouridine synthase DusB compare
IAI47_01135 +0.7 0.8 hypothetical protein compare
IAI47_12165 +0.7 4.4 flagellar basal body rod protein FlgB compare
IAI47_11375 +0.7 1.4 hypothetical protein compare
IAI47_07975 +0.7 3.4 flagellar biosynthesis protein FliQ compare
IAI47_12435 +0.7 2.6 hypothetical protein compare
IAI47_19050 +0.7 1.9 hypothetical protein compare
IAI47_21655 +0.7 0.8 LacI family DNA-binding transcriptional regulator compare
IAI47_03550 +0.7 5.0 membrane-bound lytic murein transglycosylase MltC compare
IAI47_08025 +0.7 4.7 flagellar motor switch protein FliG compare
IAI47_19710 +0.7 1.5 helix-turn-helix transcriptional regulator compare
IAI47_08030 +0.7 4.9 flagellar M-ring protein FliF compare
IAI47_08005 +0.6 4.5 flagellar hook-length control protein FliK compare
IAI47_08430 +0.6 2.3 dihydroneopterin triphosphate diphosphatase compare
IAI47_08020 +0.6 3.7 flagellar assembly protein FliH compare
IAI47_06040 +0.6 2.3 DNA polymerase V compare
IAI47_06450 +0.6 2.1 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_08350 +0.6 4.5 flagellar biosynthesis protein FlhA compare
IAI47_05435 +0.6 2.7 hypothetical protein compare
IAI47_10320 +0.6 0.7 Rrf2 family transcriptional regulator compare
IAI47_19780 +0.6 2.7 TetR/AcrR family transcriptional regulator compare
IAI47_09675 +0.6 1.3 YoaK family small membrane protein compare
IAI47_11830 +0.6 3.8 muramoyltetrapeptide carboxypeptidase compare
IAI47_02895 +0.6 4.8 DedA family protein compare
IAI47_12140 +0.6 3.6 flagellar basal-body rod protein FlgG compare
IAI47_19675 +0.6 1.9 ParD-like family protein compare
IAI47_13210 +0.6 3.4 glutamine ABC transporter ATP-binding protein GlnQ compare
IAI47_08015 +0.6 3.9 flagellum-specific ATP synthase FliI compare
IAI47_12150 +0.6 4.6 flagellar hook protein FlgE compare
IAI47_12135 +0.5 4.4 flagellar basal body L-ring protein FlgH compare
IAI47_17975 +0.5 3.1 YjbF family lipoprotein compare
IAI47_05880 +0.5 2.9 lysis protein compare
IAI47_03535 +0.5 2.9 CinA family protein compare
IAI47_04110 +0.5 4.9 two-component sensor histidine kinase BarA compare
IAI47_09790 +0.5 1.9 DUF1161 domain-containing protein compare
IAI47_12170 +0.5 3.4 flagellar basal body P-ring formation protein FlgA compare
IAI47_08465 +0.5 3.0 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_02765 +0.5 3.7 metalloprotease PmbA compare
IAI47_12555 +0.5 2.2 hypothetical protein compare
IAI47_09490 +0.5 2.3 DUF333 domain-containing protein compare
IAI47_06030 +0.5 1.4 hypothetical protein compare
IAI47_20130 +0.5 2.4 nuclear transport factor 2 family protein compare
IAI47_08460 +0.5 3.2 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_14910 +0.5 2.7 recombination-associated protein RdgC compare
IAI47_21530 +0.5 1.6 FeoA domain-containing protein compare
IAI47_12125 +0.5 3.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_14955 +0.5 1.4 phosphate starvation-inducible protein compare
IAI47_05830 +0.5 2.2 hypothetical protein compare
IAI47_05860 +0.5 2.6 YlcG family protein compare
IAI47_21735 +0.5 2.2 LysR family transcriptional regulator compare
IAI47_08345 +0.5 3.7 flagellar type III secretion system protein FlhB compare
IAI47_03740 +0.5 2.5 cell division protein ZapA compare
IAI47_05690 +0.5 1.7 hypothetical protein compare
IAI47_17080 +0.5 2.5 transcription elongation factor GreA compare
IAI47_06445 +0.4 2.1 2Fe-2S ferredoxin-like protein compare
IAI47_19430 +0.4 1.6 GNAT family N-acetyltransferase compare
IAI47_08285 +0.4 3.0 flagellar transcriptional regulator FlhC compare
IAI47_15305 +0.4 1.6 allantoin racemase compare
IAI47_09300 +0.4 2.0 crotonase/enoyl-CoA hydratase family protein compare
IAI47_04750 +0.4 1.0 hypothetical protein compare
IAI47_08000 +0.4 2.8 flagellar basal body-associated protein FliL compare
IAI47_12470 +0.4 3.6 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_06395 +0.4 0.5 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_20230 +0.4 1.8 peroxiredoxin compare
IAI47_04295 +0.4 1.9 nicotinamide-nucleotide amidase compare
IAI47_00835 +0.4 1.2 cell division protein ZapB compare
IAI47_12145 +0.4 2.4 flagellar basal body rod protein FlgF compare
IAI47_00870 +0.4 0.3 50S ribosomal protein L31 compare
IAI47_04800 +0.4 0.6 RnfH family protein compare
IAI47_02590 +0.4 2.0 RNA chaperone Hfq compare
IAI47_00930 +0.4 3.0 DNA-binding transcriptional regulator OxyR compare
IAI47_05525 +0.4 0.9 tRNA-Ala compare
IAI47_07965 +0.4 2.1 transcriptional regulator RcsA compare
IAI47_07970 +0.4 2.2 flagellar type III secretion system protein FliR compare
IAI47_16950 +0.4 1.5 GIY-YIG nuclease family protein compare
IAI47_06965 +0.4 1.0 glycosyltransferase family 2 protein compare
IAI47_08470 +0.4 3.4 murein DD-endopeptidase MepM compare
IAI47_05510 +0.4 2.7 putative DNA-binding transcriptional regulator compare
IAI47_12160 +0.4 2.6 flagellar basal body rod protein FlgC compare
IAI47_07955 +0.4 1.5 protein DsrB compare
IAI47_11545 +0.4 1.7 hypothetical protein compare
IAI47_16955 +0.4 1.9 N-acetyltransferase compare
IAI47_12305 +0.4 2.6 hypothetical protein compare
IAI47_06480 +0.4 2.7 phosphotransferase RcsD compare
IAI47_03815 +0.4 2.1 flavodoxin FldB compare
IAI47_01660 +0.4 2.4 gluconate transporter compare
IAI47_05955 +0.4 1.6 hypothetical protein compare
IAI47_21490 +0.4 1.6 H-NS histone family protein compare
IAI47_11850 +0.4 1.5 hypothetical protein compare
IAI47_16425 +0.4 2.6 MHS family MFS transporter compare
IAI47_07195 +0.4 2.2 PhnD/SsuA/transferrin family substrate-binding protein compare
IAI47_11500 +0.4 0.9 type VI secretion system tip protein VgrG compare
IAI47_08160 +0.4 2.4 RNA polymerase sigma factor FliA compare
IAI47_19330 +0.4 1.8 hypothetical protein compare
IAI47_20240 +0.4 1.9 sigma-70 family RNA polymerase sigma factor compare
IAI47_05875 +0.4 2.6 lysozyme compare
IAI47_16405 +0.4 1.2 siderophore-iron reductase FhuF compare
IAI47_00840 +0.4 1.4 ribonuclease E activity regulator RraA compare
IAI47_04755 +0.4 1.3 AlpA family transcriptional regulator compare
IAI47_06300 +0.4 2.1 histidine ABC transporter ATP-binding protein HisP compare
IAI47_10845 +0.4 1.5 major outer membrane lipoprotein compare
IAI47_15975 +0.4 1.6 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_17710 +0.4 2.6 glutamate/aspartate:proton symporter GltP compare
IAI47_05810 +0.4 1.6 hypothetical protein compare
IAI47_07250 +0.4 1.0 tRNA-Asn compare
IAI47_04070 +0.4 1.2 flavodoxin compare
IAI47_06365 +0.4 1.1 NADH-quinone oxidoreductase subunit B compare
IAI47_09795 +0.4 1.3 DUF1283 family protein compare
IAI47_01500 +0.4 2.0 DcrB family lipoprotein compare
IAI47_15695 +0.4 2.5 cystathionine gamma-synthase family protein compare
IAI47_02465 +0.4 3.0 metalloprotease TldD compare
IAI47_17255 +0.3 0.7 DUF1043 family protein compare
IAI47_04855 +0.3 0.8 anti-sigma-E factor RseA compare
IAI47_12935 +0.3 2.0 leucyl/phenylalanyl-tRNA--protein transferase compare
IAI47_20025 +0.3 2.3 LLM class flavin-dependent oxidoreductase compare
IAI47_09615 +0.3 1.5 LysR family transcriptional regulator compare
IAI47_12130 +0.3 2.7 flagellar basal body P-ring protein FlgI compare
IAI47_06470 +0.3 2.8 two-component system sensor histidine kinase RcsC compare
IAI47_02505 +0.3 1.7 DUF1471 domain-containing protein compare
IAI47_14985 +0.3 1.1 hypothetical protein compare
IAI47_09760 +0.3 2.2 purine permease compare
IAI47_10160 +0.3 1.3 AAA family ATPase compare
IAI47_11325 +0.3 1.9 P1 family peptidase compare
IAI47_10825 +0.3 0.5 tRNA-Val compare
IAI47_08280 +0.3 2.4 flagellar transcriptional regulator FlhD compare
IAI47_14750 +0.3 1.8 phosphatidylglycerophosphatase A compare
IAI47_04735 +0.3 1.9 DUF5375 family protein compare
IAI47_00430 +0.3 2.5 DNA polymerase I compare
IAI47_12665 +0.3 1.3 ribosome modulation factor compare
IAI47_16670 +0.3 1.5 stress protein compare
IAI47_07990 +0.3 1.0 flagellar motor switch protein FliN compare
IAI47_15090 +0.3 1.2 hypothetical protein compare
IAI47_20295 +0.3 1.5 DUF1427 family protein compare
IAI47_11515 +0.3 0.5 hypothetical protein compare
IAI47_19510 +0.3 1.7 hypothetical protein compare
IAI47_07995 +0.3 2.1 flagellar motor switch protein FliM compare
IAI47_19480 +0.3 2.3 PLP-dependent aminotransferase family protein compare
IAI47_11420 +0.3 0.8 hypothetical protein compare
IAI47_05195 +0.3 0.8 DnaA inactivator Hda compare
IAI47_01125 +0.3 1.7 stress response protein AzuC compare
IAI47_00290 +0.3 1.1 F0F1 ATP synthase subunit I compare
IAI47_19500 +0.3 1.4 Insecticidal toxin complex protein tccz compare
IAI47_12155 +0.3 2.2 flagellar hook assembly protein FlgD compare
IAI47_19990 +0.3 1.6 aspartate aminotransferase family protein compare
IAI47_14980 +0.3 1.1 hypothetical protein compare
IAI47_20635 +0.3 1.9 pirin family protein compare
IAI47_08800 +0.3 1.1 YoaH family protein compare
IAI47_08960 +0.3 2.1 bifunctional nicotinamidase/pyrazinamidase compare
IAI47_07920 +0.3 1.7 hypothetical protein compare
IAI47_17895 +0.3 1.5 diacylglycerol kinase compare
IAI47_12355 +0.3 1.0 hydroxymyristoyl-ACP dehydratase compare
IAI47_06780 +0.3 1.7 iron-sulfur cluster carrier protein ApbC compare
IAI47_10500 +0.3 2.3 dipeptide/tripeptide permease DtpA compare
IAI47_03865 +0.3 1.3 PTS lactose/cellobiose transporter subunit IIA compare
IAI47_05660 +0.3 1.8 serine protease compare
IAI47_21770 +0.3 1.3 Txe/YoeB family addiction module toxin compare
IAI47_20725 +0.3 1.8 AAA family ATPase compare
IAI47_19185 +0.3 1.5 GNAT family N-acetyltransferase compare
IAI47_01750 +0.3 1.5 glycerol-3-phosphate dehydrogenase compare
IAI47_20300 +0.3 1.8 hydrolase compare
IAI47_12320 +0.3 1.1 hotdog family protein compare
IAI47_00375 +0.3 2.7 ribose operon transcriptional repressor RbsR compare
IAI47_02495 +0.3 1.3 hypothetical protein compare
IAI47_09470 +0.3 1.2 hypothetical protein compare
IAI47_09060 +0.3 1.7 YchE family NAAT transporter compare
IAI47_17385 +0.3 0.8 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_05790 +0.3 1.0 hypothetical protein compare
IAI47_13485 +0.3 1.3 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_14545 +0.3 1.4 hypothetical protein compare
IAI47_01615 +0.3 1.7 DUF2756 domain-containing protein compare
IAI47_21125 +0.3 1.4 metalloregulator ArsR/SmtB family transcription factor compare
IAI47_20540 +0.3 1.1 TetR/AcrR family transcriptional regulator compare
IAI47_01840 +0.3 1.3 ribosome-associated heat shock protein Hsp15 compare
IAI47_15595 +0.3 0.5 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_03290 +0.3 1.7 hypothetical protein compare
IAI47_07480 +0.3 0.8 hypothetical protein compare
IAI47_00845 +0.3 1.7 HslU--HslV peptidase ATPase subunit compare
IAI47_07375 +0.3 1.5 ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Cobalt chloride hexahydrate across organisms