Experiment set1IT067 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.8 -4.7 O-succinylhomoserine sulfhydrylase compare
AO353_00430 -4.3 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_04930 -4.3 -2.9 flavodoxin compare
AO353_20665 -4.3 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_00900 -4.2 -5.0 2-methylisocitrate lyase compare
AO353_00895 -4.2 -5.0 2-methylcitrate synthase compare
AO353_22800 -4.1 -4.0 sulfite reductase compare
AO353_07290 -4.0 -10.4 mannose-1-phosphate guanylyltransferase compare
AO353_07230 -4.0 -14.8 anthranilate synthase compare
AO353_12070 -4.0 -7.2 imidazoleglycerol-phosphate dehydratase compare
AO353_20635 -4.0 -12.5 3-isopropylmalate dehydrogenase compare
AO353_05115 -4.0 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13070 -4.0 -7.1 phosphoserine phosphatase compare
AO353_20865 -3.9 -2.7 cold-shock protein compare
AO353_12090 -3.9 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20625 -3.9 -3.8 3-isopropylmalate dehydratase compare
AO353_12515 -3.9 -19.4 glutamate synthase compare
AO353_06455 -3.8 -2.7 D-alanyl-D-alanine carboxypeptidase compare
AO353_12520 -3.8 -11.1 glutamate synthase compare
AO353_10670 -3.8 -7.8 shikimate dehydrogenase compare
AO353_12085 -3.8 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_02550 -3.8 -5.6 TetR family transcriptional regulator compare
AO353_05110 -3.8 -10.9 histidinol dehydrogenase compare
AO353_08180 -3.7 -12.9 homoserine O-acetyltransferase compare
AO353_09240 -3.7 -2.6 acetylglutamate kinase compare
AO353_14940 -3.7 -3.6 malate:quinone oxidoreductase compare
AO353_28425 -3.7 -3.6 TetR family transcriptional regulator compare
AO353_08185 -3.7 -10.5 methionine biosynthesis protein MetW compare
AO353_00885 -3.6 -4.8 3-methylitaconate isomerase compare
AO353_08345 -3.6 -8.7 dihydroxy-acid dehydratase compare
AO353_14990 -3.6 -3.3 hypothetical protein compare
AO353_14505 -3.6 -12.2 ketol-acid reductoisomerase compare
AO353_00905 -3.5 -4.8 GntR family transcriptional regulator compare
AO353_07210 -3.5 -6.3 indole-3-glycerol-phosphate synthase compare
AO353_18780 -3.5 -7.8 cobyrinic acid a,c-diamide synthase compare
AO353_12115 -3.5 -3.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13165 -3.5 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
AO353_23495 -3.4 -3.9 SAM-dependent methyltransferase compare
AO353_13160 -3.4 -2.4 membrane protease HflC compare
AO353_04105 -3.4 -7.7 argininosuccinate synthase compare
AO353_03365 -3.4 -9.8 transcriptional regulator compare
AO353_12075 -3.4 -7.9 imidazole glycerol phosphate synthase subunit HisH compare
AO353_01350 -3.4 -7.5 4-amino-4-deoxychorismate lyase compare
AO353_03025 -3.4 -7.1 acetylornithine aminotransferase compare
AO353_20620 -3.4 -8.1 isopropylmalate isomerase compare
AO353_10035 -3.4 -9.4 LysR family transcriptional regulator compare
AO353_08685 -3.3 -9.1 N-acetylglutamate synthase compare
AO353_00310 -3.3 -9.7 transaldolase compare
AO353_20095 -3.2 -4.9 histidine kinase compare
AO353_14495 -3.2 -11.6 acetolactate synthase 3 catalytic subunit compare
AO353_14150 -3.2 -2.2 peptidylprolyl isomerase compare
AO353_07525 -3.2 -15.1 biotin synthase compare
AO353_19090 -3.1 -3.7 MarR family transcriptional regulator compare
AO353_15925 -3.1 -13.8 2-isopropylmalate synthase compare
AO353_09000 -3.1 -5.6 argininosuccinate lyase compare
AO353_14775 -3.1 -7.2 hypothetical protein compare
AO353_10710 -3.1 -6.2 tryptophan synthase subunit beta compare
AO353_07515 -3.1 -3.0 transporter compare
AO353_10025 -3.1 -14.8 pyruvate carboxylase subunit B compare
AO353_08780 -3.1 -8.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_07155 -3.1 -8.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_02720 -3.0 -7.3 cysteine synthase compare
AO353_20175 -3.0 -4.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_02100 -3.0 -4.6 phosphoglycolate phosphatase compare
AO353_02440 -3.0 -14.3 peptidase S41 compare
AO353_08350 -3.0 -8.6 hypothetical protein compare
AO353_08510 -3.0 -5.3 3-phosphoglycerate dehydrogenase compare
AO353_07505 -3.0 -9.6 dethiobiotin synthetase compare
AO353_08995 -2.9 -12.9 chemotaxis protein CheY compare
AO353_02040 -2.9 -3.7 integration host factor subunit beta compare
AO353_12105 -2.9 -6.5 peptidase S41 compare
AO353_15185 -2.9 -5.8 ATPase compare
AO353_19060 -2.9 -4.8 CysB family transcriptional regulator compare
AO353_06550 -2.9 -9.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO353_04155 -2.9 -12.8 ornithine carbamoyltransferase compare
AO353_08470 -2.9 -5.5 RNA pyrophosphohydrolase compare
AO353_12470 -2.9 -16.1 peptidase compare
AO353_08110 -2.9 -6.7 glutathione synthetase compare
AO353_12365 -2.9 -4.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_10030 -2.9 -11.0 pyruvate carboxylase subunit A compare
AO353_00890 -2.9 -5.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_07215 -2.8 -8.0 anthranilate phosphoribosyltransferase compare
AO353_05195 -2.8 -9.2 glmZ(sRNA)-inactivating NTPase compare
AO353_02075 -2.8 -11.5 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_00495 -2.8 -3.3 DNA topoisomerase I compare
AO353_11730 -2.8 -9.2 glutamate--cysteine ligase compare
AO353_14380 -2.8 -5.8 pantoate--beta-alanine ligase compare
AO353_06365 -2.8 -12.2 hypothetical protein compare
AO353_02070 -2.7 -7.6 prephenate dehydratase compare
AO353_05625 -2.7 -2.6 transcription elongation factor GreA compare
AO353_19020 -2.7 -2.1 hypothetical protein compare
AO353_06775 -2.7 -7.7 dTDP-4-dehydrorhamnose reductase compare
AO353_20910 -2.7 -6.6 MerR family transcriptional regulator compare
AO353_14115 -2.7 -6.6 gamma-glutamyl kinase compare
AO353_20300 -2.6 -9.7 anti-sigma factor compare
AO353_04190 -2.6 -3.5 glycerol-3-phosphate dehydrogenase compare
AO353_16495 -2.6 -6.9 zinc metallopeptidase RseP compare
AO353_22585 -2.6 -8.8 HxlR family transcriptional regulator compare
AO353_03580 -2.6 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_07220 -2.5 -8.4 anthranilate synthase compare
AO353_02685 -2.5 -4.7 phosphoribosylglycinamide formyltransferase compare
AO353_13100 -2.5 -2.4 GTPase RsgA compare
AO353_08475 -2.5 -9.3 phosphoserine phosphatase compare
AO353_04175 -2.5 -5.3 glycerol uptake facilitator GlpF compare
AO353_06495 -2.5 -6.2 gamma-glutamyl phosphate reductase compare
AO353_10705 -2.5 -5.3 tryptophan synthase subunit alpha compare
AO353_12240 -2.5 -6.6 histidine utilization repressor compare
AO353_18425 -2.5 -5.9 hypothetical protein compare
AO353_15285 -2.5 -11.3 hypothetical protein compare
AO353_08770 -2.5 -11.0 hypothetical protein conserved
AO353_21625 -2.5 -3.3 Fe/S biogenesis protein NfuA compare
AO353_07510 -2.5 -10.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_15905 -2.4 -7.6 outer membrane protein assembly factor BamB compare
AO353_00515 -2.4 -4.3 hypothetical protein compare
AO353_08115 -2.4 -6.0 energy transducer TonB compare
AO353_03020 -2.4 -6.6 arginine N-succinyltransferase compare
AO353_08015 -2.4 -7.3 5,10-methylenetetrahydrofolate reductase compare
AO353_02465 -2.4 -2.9 hypothetical protein compare
AO353_08045 -2.4 -13.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_14220 -2.4 -2.2 ribosomal large subunit pseudouridine synthase D compare
AO353_12500 -2.4 -2.3 shikimate kinase compare
AO353_03615 -2.4 -3.9 cold-shock protein compare
AO353_01355 -2.4 -9.1 3-oxoacyl-ACP synthase compare
AO353_08885 -2.3 -15.4 polyphosphate kinase compare
AO353_14030 -2.3 -12.0 ABC transporter ATP-binding protein compare
AO353_07520 -2.3 -13.0 8-amino-7-oxononanoate synthase compare
AO353_20335 -2.3 -7.1 3-methylcrotonyl-CoA carboxylase compare
AO353_13685 -2.3 -5.9 3-dehydroquinate dehydratase compare
AO353_14370 -2.3 -7.4 glucose-6-phosphate isomerase compare
AO353_24340 -2.3 -2.8 TetR family transcriptional regulator compare
AO353_10215 -2.3 -11.2 methyltransferase compare
AO353_06050 -2.3 -7.0 exodeoxyribonuclease V subunit gamma compare
AO353_04180 -2.3 -9.5 glycerol kinase compare
AO353_13225 -2.3 -4.0 50S ribosomal protein L9 compare
AO353_06045 -2.2 -8.1 exodeoxyribonuclease V subunit beta compare
AO353_06320 -2.2 -4.6 AsnC family transcriptional regulator compare
AO353_20170 -2.2 -5.4 trigger factor compare
AO353_00825 -2.2 -4.1 porin compare
AO353_09440 -2.2 -2.2 type VI secretion protein compare
AO353_05145 -2.1 -7.2 ABC transporter permease compare
AO353_07315 -2.1 -2.9 rRNA methyltransferase compare
AO353_20200 -2.1 -4.4 peptidylprolyl isomerase compare
AO353_16110 -2.1 -14.0 glycosyl transferase family 51 conserved
AO353_11850 -2.1 -4.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_13140 -2.1 -6.5 tRNA dimethylallyltransferase compare
AO353_15260 -2.1 -6.3 stringent starvation protein A compare
AO353_16310 -2.1 -9.5 phosphoenolpyruvate carboxylase conserved
AO353_20540 -2.1 -7.3 aromatic amino acid aminotransferase compare
AO353_18285 -2.1 -3.2 3-phosphoglycerate kinase compare
AO353_29145 -2.1 -3.7 HxlR family transcriptional regulator compare
AO353_11775 -2.1 -7.5 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_02810 -2.0 -8.4 histidine kinase compare
AO353_18170 -2.0 -7.3 aspartyl beta-hydroxylase compare
AO353_02195 -2.0 -4.5 spermidine synthase compare
AO353_16940 -2.0 -6.2 deoxycytidine triphosphate deaminase compare
AO353_04035 -2.0 -5.1 exclusion suppressor FxsA compare
AO353_03360 -1.9 -8.3 glucose-6-phosphate dehydrogenase compare
AO353_13640 -1.9 -5.1 histidine kinase compare
AO353_15385 -1.9 -1.9 hypothetical protein compare
AO353_11750 -1.9 -2.8 ATPase compare
AO353_16825 -1.9 -5.3 hypothetical protein compare
AO353_09745 -1.9 -1.8 hypothetical protein compare
AO353_20345 -1.9 -7.5 methylcrotonoyl-CoA carboxylase compare
AO353_05010 -1.9 -2.2 HopJ type III effector protein compare
AO353_13200 -1.9 -10.2 exoribonuclease R compare
AO353_15785 -1.8 -7.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_18540 -1.8 -3.4 pseudouridine synthase compare
AO353_02250 -1.8 -3.6 chorismate synthase compare
AO353_05150 -1.8 -5.3 ABC transporter ATP-binding protein compare
AO353_09315 -1.8 -7.9 LysR family transcriptional regulator compare
AO353_19055 -1.8 -7.5 universal stress protein UspA compare
AO353_10430 -1.8 -3.7 chromosome partitioning protein ParB compare
AO353_05690 -1.8 -3.8 SsrA-binding protein compare
AO353_09040 -1.8 -1.8 diaminopimelate epimerase compare
AO353_12360 -1.8 -7.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_06585 -1.8 -7.2 hypothetical protein compare
AO353_20510 -1.8 -2.3 amidase compare
AO353_24745 -1.8 -3.0 hypothetical protein compare
AO353_20660 -1.7 -3.4 pseudouridine synthase compare
AO353_09260 -1.7 -6.2 ribonuclease PH compare
AO353_16195 -1.7 -2.1 DNA mismatch repair protein MutT compare
AO353_14500 -1.7 -6.4 acetolactate synthase 3 regulatory subunit compare
AO353_00845 -1.7 -7.0 CmaX protein compare
AO353_20340 -1.7 -4.0 gamma-carboxygeranoyl-CoA hydratase compare
AO353_03545 -1.7 -7.1 hypothetical protein compare
AO353_03590 -1.7 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_00835 -1.7 -4.9 transporter compare
AO353_24130 -1.7 -3.3 hypothetical protein compare
AO353_19015 -1.7 -10.5 hypothetical protein compare
AO353_08170 -1.7 -4.6 hypothetical protein compare
AO353_08165 -1.7 -3.1 pyrroline-5-carboxylate reductase compare
AO353_15290 -1.6 -6.8 methyltransferase compare
AO353_13925 -1.6 -2.8 XRE family transcriptional regulator compare
AO353_28110 -1.6 -2.8 TetR family transcriptional regulator compare
AO353_09660 -1.6 -2.2 hypothetical protein compare
AO353_20850 -1.6 -5.6 hypothetical protein compare
AO353_09865 -1.6 -9.2 hypothetical protein compare
AO353_23935 -1.6 -4.6 hypothetical protein compare
AO353_04355 -1.6 -2.1 homoserine dehydrogenase compare
AO353_05425 -1.5 -3.9 glycine/betaine ABC transporter permease compare


Specific Phenotypes

For 31 genes in this experiment

For carbon source Sodium propionate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium propionate across organisms