Experiment set1IT067 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_02735 +5.0 36.9 chemotaxis protein CheY compare
AO353_04845 +4.6 36.7 LysR family transcriptional regulator conserved
AO353_21830 +4.5 31.1 chemotaxis protein CheY compare
AO353_18435 +3.7 17.3 MarR family transcriptional regulator compare
AO353_07140 +3.4 29.7 peptidase M23 compare
AO353_16615 +3.1 13.9 RNA polymerase sigma factor RpoS compare
AO353_20185 +3.0 10.7 DNA-binding protein compare
AO353_03515 +2.9 4.5 cold-shock protein compare
AO353_02020 +2.6 5.4 hypothetical protein compare
AO353_26390 +2.5 3.0 glyoxalase compare
AO353_08775 +2.4 4.4 cell division protein ZapA compare
AO353_06725 +2.4 4.9 hypothetical protein compare
AO353_04185 +2.4 12.9 DeoR family transcriptional regulator compare
AO353_20925 +2.1 1.9 hypothetical protein compare
AO353_01985 +2.1 14.5 hypothetical protein compare
AO353_01990 +2.0 11.3 UDP-N-acetylglucosamine 2-epimerase compare
AO353_12940 +2.0 10.4 glycosyl transferase compare
AO353_10270 +1.9 10.8 glycosyl transferase compare
AO353_09900 +1.8 11.6 phosphate ABC transporter permease compare
AO353_02010 +1.8 9.8 glycosyl transferase family 1 compare
AO353_01970 +1.8 13.2 hypothetical protein compare
AO353_09860 +1.7 13.5 histidine kinase compare
AO353_14420 +1.7 2.7 molecular chaperone DnaK compare
AO353_09890 +1.7 9.7 phosphate ABC transporter ATP-binding protein compare
AO353_01995 +1.6 13.0 hypothetical protein compare
AO353_02025 +1.6 12.0 mannose-1-phosphate guanyltransferase compare
AO353_01980 +1.6 9.6 NAD-dependent dehydratase compare
AO353_25500 +1.6 5.4 phosphoglycerate mutase compare
AO353_17735 +1.5 3.8 hypothetical protein compare
AO353_27080 +1.5 10.0 hypothetical protein compare
AO353_13300 +1.5 1.9 LOG family protein compare
AO353_08955 +1.5 9.4 transcriptional regulator compare
AO353_12390 +1.4 3.2 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_01410 +1.4 5.5 ribonuclease E compare
AO353_12950 +1.4 7.5 polymerase compare
AO353_12880 +1.4 1.2 ADP-heptose--LPS heptosyltransferase compare
AO353_00440 +1.4 7.6 hypothetical protein compare
AO353_12870 +1.4 8.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_07255 +1.4 11.9 polyamine ABC transporter substrate-binding protein compare
AO353_07250 +1.3 3.6 polyamine ABC transporter permease compare
AO353_03510 +1.3 5.0 glycine cleavage system protein T compare
AO353_19340 +1.3 10.7 amino acid ABC transporter substrate-binding protein compare
AO353_09235 +1.3 7.2 phosphoglucomutase compare
AO353_03425 +1.3 7.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_11155 +1.2 9.1 thioesterase compare
AO353_10450 +1.2 4.4 hypothetical protein compare
AO353_01345 +1.2 10.0 aminodeoxychorismate lyase compare
AO353_00765 +1.2 8.4 D-alanyl-D-alanine carboxypeptidase compare
AO353_13660 +1.2 7.7 tRNA-dihydrouridine synthase B compare
AO353_24095 +1.2 1.9 multidrug DMT transporter permease compare
AO353_01975 +1.2 7.1 glycosyl transferase compare
AO353_02135 +1.1 7.5 hypothetical protein conserved
AO353_10255 +1.1 7.6 ABC transporter compare
AO353_25835 +1.1 5.6 6-phosphogluconate dehydrogenase compare
AO353_08735 +1.1 7.9 glycine cleavage system protein T compare
AO353_02015 +1.1 6.2 acetyltransferase compare
AO353_21270 +1.1 7.4 anti-sigma factor compare
AO353_08760 +1.1 8.9 Xaa-Pro aminopeptidase compare
AO353_24595 +1.0 1.4 hypothetical protein compare
AO353_14945 +1.0 3.9 hypothetical protein compare
AO353_09265 +1.0 3.2 hypothetical protein compare
AO353_10630 +1.0 5.0 16S rRNA methyltransferase compare
AO353_10260 +1.0 7.5 sugar ABC transporter ATP-binding protein compare
AO353_12305 +1.0 5.4 D-tyrosyl-tRNA(Tyr) deacylase compare
AO353_22780 +1.0 4.2 phosphoglycerate mutase compare
AO353_04840 +1.0 6.6 RND transporter compare
AO353_14840 +1.0 5.9 NAD-dependent dehydratase compare
AO353_02995 +1.0 5.5 succinylglutamate desuccinylase compare
AO353_22580 +1.0 2.3 3-demethylubiquinone-9 3-methyltransferase compare
AO353_13030 +1.0 6.3 cytoplasmic protein compare
AO353_09945 +1.0 2.5 LysR family transcriptional regulator compare
AO353_10265 +1.0 6.4 glycosyl transferase compare
AO353_04830 +1.0 4.1 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_09275 +1.0 0.9 DNA-directed RNA polymerase subunit omega compare
AO353_26830 +1.0 3.9 histidine kinase compare
AO353_15170 +1.0 3.5 cytochrome D ubiquinol oxidase subunit III compare
AO353_16450 +1.0 7.1 protein-PII uridylyltransferase compare
AO353_22305 +1.0 2.7 LysR family transcriptional regulator compare
AO353_25670 +1.0 5.1 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
AO353_01915 +1.0 1.7 GlcG protein compare
AO353_00265 +0.9 2.7 hypothetical protein compare
AO353_08465 +0.9 4.6 phosphoenolpyruvate-protein phosphotransferase compare
AO353_12720 +0.9 1.8 hypothetical protein compare
AO353_14590 +0.9 1.9 serine kinase/phosphatase compare
AO353_04500 +0.9 2.6 DNA repair protein RecO compare
AO353_08050 +0.9 3.2 16S rRNA methyltransferase compare
AO353_27130 +0.9 1.3 hypothetical protein compare
AO353_12575 +0.9 2.5 type II secretion system protein GspJ compare
AO353_06755 +0.9 7.7 peptide ABC transporter permease compare
AO353_17855 +0.9 3.2 ribonuclease D compare
AO353_09895 +0.9 3.3 phosphate ABC transporter permease compare
AO353_23160 +0.9 2.8 hydrolase compare
AO353_24175 +0.9 1.7 hypothetical protein compare
AO353_02975 +0.9 2.6 aspartate kinase compare
AO353_02030 +0.9 1.9 hypothetical protein compare
AO353_05400 +0.9 4.2 peptide transporter compare
AO353_10230 +0.9 6.0 glycosyltransferase compare
AO353_09030 +0.9 1.5 iron donor protein CyaY compare
AO353_10965 +0.9 6.4 N-acetylmuramoyl-L-alanine amidase conserved
AO353_03520 +0.9 2.1 hypothetical protein compare
AO353_19000 +0.9 1.5 ABC transporter compare
AO353_08090 +0.9 3.5 chemotaxis protein compare
AO353_06355 +0.9 1.3 thiamine-phosphate pyrophosphorylase compare
AO353_13570 +0.8 6.5 TonB-dependent receptor compare
AO353_08705 +0.8 5.6 hypothetical protein compare
AO353_02655 +0.8 3.6 peptidase P60 compare
AO353_04825 +0.8 3.5 hypothetical protein compare
AO353_10235 +0.8 6.5 glycosyltransferase compare
AO353_21645 +0.8 2.3 cobalt transporter compare
AO353_04490 +0.8 5.4 murein transglycosylase compare
AO353_06430 +0.8 6.2 murein transglycosylase compare
AO353_11525 +0.8 5.3 aminotransferase compare
AO353_26815 +0.8 0.9 transcriptional regulator compare
AO353_02715 +0.8 1.9 23S rRNA methyltransferase compare
AO353_01870 +0.8 4.3 hypothetical protein compare
AO353_04835 +0.8 5.2 fusaric acid resistance protein compare
AO353_06720 +0.8 1.0 NrdR family transcriptional regulator compare
AO353_06780 +0.8 5.9 DNA repair helicase Lhr (from data) compare
AO353_00920 +0.8 3.6 alpha-L-glutamate ligase compare
AO353_05675 +0.8 3.9 protein RnfH compare
AO353_07145 +0.8 5.8 anhydro-N-acetylmuramic acid kinase compare
AO353_15450 +0.7 5.9 ubiquinol oxidase subunit II compare
AO353_29355 +0.7 2.0 hypothetical protein compare
AO353_13465 +0.7 4.0 hypothetical protein compare
AO353_12015 +0.7 1.2 antitoxin compare
AO353_16765 +0.7 2.3 hypothetical protein compare
AO353_20135 +0.7 4.7 D-alanyl-D-alanine endopeptidase compare
AO353_11785 +0.7 2.6 hypothetical protein compare
AO353_26950 +0.7 2.4 hypothetical protein compare
AO353_16925 +0.7 6.2 AmpG family muropeptide MFS transporter compare
AO353_05840 +0.7 5.6 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_14585 +0.7 3.4 ribosomal-protein-alanine acetyltransferase compare
AO353_29155 +0.7 2.2 glyoxalase compare
AO353_08120 +0.7 2.2 hypothetical protein compare
AO353_27890 +0.7 3.0 RpiR family transcriptional regulator compare
AO353_01060 +0.7 4.0 3-ketoacyl-ACP reductase compare
AO353_22370 +0.7 3.0 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_26870 +0.7 2.1 AP endonuclease compare
AO353_03410 +0.7 2.4 chemotaxis protein CheY compare
AO353_08700 +0.7 3.9 AsnC family transcriptional regulator compare
AO353_07445 +0.7 1.4 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_07355 +0.7 3.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03970 +0.7 3.5 diguanylate cyclase compare
AO353_08945 +0.7 2.9 ABC transporter ATP-binding protein compare
AO353_17975 +0.7 3.9 arabinose ABC transporter permease compare
AO353_16015 +0.7 4.6 tRNA (mo5U34)-methyltransferase compare
AO353_02045 +0.7 4.0 hypothetical protein compare
AO353_23720 +0.7 2.2 BatB protein compare
AO353_11160 +0.7 3.7 GntR family transcriptional regulator compare
AO353_27735 +0.7 4.0 isocitrate lyase compare
AO353_00255 +0.7 2.7 hypothetical protein compare
AO353_29060 +0.7 2.5 hypothetical protein compare
AO353_03525 +0.7 4.6 quinolinate synthase A compare
AO353_22675 +0.7 1.9 hypothetical protein compare
AO353_02640 +0.7 1.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_25030 +0.7 1.8 recombinase compare
AO353_03130 +0.7 2.2 hypothetical protein compare
AO353_00275 +0.7 4.0 hypothetical protein compare
AO353_06135 +0.7 1.5 NADPH:quinone reductase compare
AO353_28150 +0.7 1.5 arginine aminotransferase compare
AO353_06750 +0.7 2.6 methionine ABC transporter ATP-binding protein compare
AO353_10160 +0.6 4.0 hypothetical protein compare
AO353_01865 +0.6 5.2 cation/acetate symporter ActP compare
AO353_25680 +0.6 1.6 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) compare
AO353_27690 +0.6 4.7 isocitrate dehydrogenase compare
AO353_23005 +0.6 1.6 hypothetical protein compare
AO353_03050 +0.6 4.0 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
AO353_23785 +0.6 1.2 hypothetical protein compare
AO353_00915 +0.6 4.3 hypothetical protein compare
AO353_17085 +0.6 1.5 hypothetical protein compare
AO353_20590 +0.6 1.5 hydrolase compare
AO353_29105 +0.6 2.3 hypothetical protein compare
AO353_00235 +0.6 2.1 transcriptional regulator compare
AO353_03115 +0.6 1.5 TetR family transcriptional regulator compare
AO353_25610 +0.6 1.6 polysaccharide deacetylase compare
AO353_20430 +0.6 4.6 hypothetical protein compare
AO353_00470 +0.6 1.9 CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase compare
AO353_20420 +0.6 3.7 NADPH-dependent FMN reductase compare
AO353_13420 +0.6 1.6 hypothetical protein compare
AO353_08875 +0.6 1.1 amino acid ABC transporter ATP-binding protein compare
AO353_03775 +0.6 3.8 pyruvate kinase compare
AO353_08620 +0.6 1.4 hypothetical protein compare
AO353_22500 +0.6 1.3 hypothetical protein compare
AO353_14570 +0.6 2.4 chromosome partitioning protein compare
AO353_28080 +0.6 2.2 hypothetical protein compare
AO353_23930 +0.6 2.2 chemotaxis protein CheY compare
AO353_24015 +0.6 2.9 non ribosomal peptide synthetase BasB compare
AO353_03815 +0.6 0.9 heme utilization protein compare
AO353_29340 +0.6 1.0 transporter compare
AO353_00590 +0.6 1.5 cytochrome C oxidase Cbb3 compare
AO353_00325 +0.6 1.9 pilus assembly protein compare
AO353_02205 +0.6 1.7 hypothetical protein compare
AO353_11190 +0.6 4.7 ABC transporter compare
AO353_18325 +0.6 0.9 hypothetical protein compare
AO353_01225 +0.6 3.2 ABC transporter substrate-binding protein compare
AO353_02630 +0.6 2.0 5,6-dimethylbenzimidazole synthase compare
AO353_08960 +0.6 2.1 peptidylprolyl isomerase compare
AO353_10990 +0.6 3.5 glutamate:protein symporter compare
AO353_02600 +0.6 1.3 alpha-ribazole phosphatase compare
AO353_09135 +0.6 1.5 cytochrome C compare


Specific Phenotypes

For 31 genes in this experiment

For carbon source Sodium propionate in Pseudomonas fluorescens FW300-N2E3

For carbon source Sodium propionate across organisms